Toolkit/synthetic biology approaches for opto-protein development

synthetic biology approaches for opto-protein development

Engineering Method·Research·Since 2022

Taxonomy: Technique Branch / Method. Workflows sit above the mechanism and technique branches rather than replacing them.

Summary

Synthetic biology approaches for opto-protein development are protein engineering strategies for creating and optimizing non-neuronal light-regulatable proteins. The cited review describes modifying photosensitive domains and fusing them to effector domains to generate light-controllable protein functions.

Usefulness & Problems

Why this is useful

These approaches are useful for developing novel optogenetic proteins whose activity can be regulated by light. The review specifically positions protein engineering and synthetic biology as means to aid the development and optimization of non-neuronal opto-proteins.

Problem solved

These approaches address the engineering problem of converting proteins into light-controllable systems. The supplied evidence specifically identifies modification of photosensitive domains and fusion to effector domains as strategies for generating light-regulated function.

Problem links

Need precise spatiotemporal control with light input

Derived

Synthetic biology approaches for opto-protein development comprise protein engineering strategies for creating and optimizing non-neuronal light-regulatable proteins. The cited review describes modification of photosensitive domains and fusion of these domains to effector proteins to generate light-controllable functions.

Taxonomy & Function

Primary hierarchy

Technique Branch

Method: A concrete method used to build, optimize, or evolve an engineered system.

Techniques

No technique tags yet.

Target processes

No target processes tagged yet.

Input: Light

Implementation Constraints

cofactor dependency: cofactor requirement unknownencoding mode: genetically encodedimplementation constraint: context specific validationimplementation constraint: spectral hardware requirementoperating role: builderswitch architecture: uncaging

Implementation is described at the level of construct design, namely modification of photosensitive domains and their fusion to effector domains. The provided evidence does not specify cofactors, expression systems, delivery methods, or domain architectures beyond this general strategy.

The supplied evidence is review-level and does not identify a single defined construct, target protein class, or validated performance metric. No specific wavelengths, host organisms, dynamic ranges, kinetics, or comparative experimental results are provided in the evidence here.

Validation

Cell-freeBacteriaMammalianMouseHumanTherapeuticIndep. Replication

Supporting Sources

Ranked Claims

Claim 1design strategysupports2022Source 1needs review

Modification of photosensitive domains and their fusion to effector domains are discussed as general strategies for creating light-controllable functions.

general strategies for creating light-controllable functions, modification of the photosensitive domains and their fusion to effector domains
Claim 2design strategysupports2022Source 1needs review

Modification of photosensitive domains and their fusion to effector domains are discussed as general strategies for creating light-controllable functions.

general strategies for creating light-controllable functions, modification of the photosensitive domains and their fusion to effector domains
Claim 3design strategysupports2022Source 1needs review

Modification of photosensitive domains and their fusion to effector domains are discussed as general strategies for creating light-controllable functions.

general strategies for creating light-controllable functions, modification of the photosensitive domains and their fusion to effector domains
Claim 4design strategysupports2022Source 1needs review

Modification of photosensitive domains and their fusion to effector domains are discussed as general strategies for creating light-controllable functions.

general strategies for creating light-controllable functions, modification of the photosensitive domains and their fusion to effector domains
Claim 5design strategysupports2022Source 1needs review

Modification of photosensitive domains and their fusion to effector domains are discussed as general strategies for creating light-controllable functions.

general strategies for creating light-controllable functions, modification of the photosensitive domains and their fusion to effector domains
Claim 6design strategysupports2022Source 1needs review

Modification of photosensitive domains and their fusion to effector domains are discussed as general strategies for creating light-controllable functions.

general strategies for creating light-controllable functions, modification of the photosensitive domains and their fusion to effector domains
Claim 7design strategysupports2022Source 1needs review

Modification of photosensitive domains and their fusion to effector domains are discussed as general strategies for creating light-controllable functions.

general strategies for creating light-controllable functions, modification of the photosensitive domains and their fusion to effector domains
Claim 8design strategysupports2022Source 1needs review

Modification of photosensitive domains and their fusion to effector domains are discussed as general strategies for creating light-controllable functions.

general strategies for creating light-controllable functions, modification of the photosensitive domains and their fusion to effector domains
Claim 9design strategysupports2022Source 1needs review

Modification of photosensitive domains and their fusion to effector domains are discussed as general strategies for creating light-controllable functions.

general strategies for creating light-controllable functions, modification of the photosensitive domains and their fusion to effector domains
Claim 10design strategysupports2022Source 1needs review

Modification of photosensitive domains and their fusion to effector domains are discussed as general strategies for creating light-controllable functions.

general strategies for creating light-controllable functions, modification of the photosensitive domains and their fusion to effector domains
Claim 11design strategysupports2022Source 1needs review

Modification of photosensitive domains and their fusion to effector domains are discussed as general strategies for creating light-controllable functions.

general strategies for creating light-controllable functions, modification of the photosensitive domains and their fusion to effector domains
Claim 12design strategysupports2022Source 1needs review

Modification of photosensitive domains and their fusion to effector domains are discussed as general strategies for creating light-controllable functions.

general strategies for creating light-controllable functions, modification of the photosensitive domains and their fusion to effector domains
Claim 13design strategysupports2022Source 1needs review

Modification of photosensitive domains and their fusion to effector domains are discussed as general strategies for creating light-controllable functions.

general strategies for creating light-controllable functions, modification of the photosensitive domains and their fusion to effector domains
Claim 14design strategysupports2022Source 1needs review

Modification of photosensitive domains and their fusion to effector domains are discussed as general strategies for creating light-controllable functions.

general strategies for creating light-controllable functions, modification of the photosensitive domains and their fusion to effector domains
Claim 15design strategysupports2022Source 1needs review

Modification of photosensitive domains and their fusion to effector domains are discussed as general strategies for creating light-controllable functions.

general strategies for creating light-controllable functions, modification of the photosensitive domains and their fusion to effector domains
Claim 16design strategysupports2022Source 1needs review

Modification of photosensitive domains and their fusion to effector domains are discussed as general strategies for creating light-controllable functions.

general strategies for creating light-controllable functions, modification of the photosensitive domains and their fusion to effector domains
Claim 17design strategysupports2022Source 1needs review

Modification of photosensitive domains and their fusion to effector domains are discussed as general strategies for creating light-controllable functions.

general strategies for creating light-controllable functions, modification of the photosensitive domains and their fusion to effector domains
Claim 18design strategysupports2022Source 1needs review

Modification of photosensitive domains and their fusion to effector domains are discussed as general strategies for creating light-controllable functions.

general strategies for creating light-controllable functions, modification of the photosensitive domains and their fusion to effector domains
Claim 19design strategysupports2022Source 1needs review

Modification of photosensitive domains and their fusion to effector domains are discussed as general strategies for creating light-controllable functions.

general strategies for creating light-controllable functions, modification of the photosensitive domains and their fusion to effector domains
Claim 20design strategysupports2022Source 1needs review

Modification of photosensitive domains and their fusion to effector domains are discussed as general strategies for creating light-controllable functions.

general strategies for creating light-controllable functions, modification of the photosensitive domains and their fusion to effector domains
Claim 21review scopesupports2022Source 1needs review

The review focuses on engineering and optimization of non-neuronal light-regulatable proteins using protein engineering and synthetic biology approaches.

This review highlights different protein engineering and synthetic biology approaches, which might aid in the development and optimization of novel optogenetic proteins (Opto-proteins). Focusing on non-neuronal optogenetics
Claim 22review scopesupports2022Source 1needs review

The review focuses on engineering and optimization of non-neuronal light-regulatable proteins using protein engineering and synthetic biology approaches.

This review highlights different protein engineering and synthetic biology approaches, which might aid in the development and optimization of novel optogenetic proteins (Opto-proteins). Focusing on non-neuronal optogenetics
Claim 23review scopesupports2022Source 1needs review

The review focuses on engineering and optimization of non-neuronal light-regulatable proteins using protein engineering and synthetic biology approaches.

This review highlights different protein engineering and synthetic biology approaches, which might aid in the development and optimization of novel optogenetic proteins (Opto-proteins). Focusing on non-neuronal optogenetics
Claim 24review scopesupports2022Source 1needs review

The review focuses on engineering and optimization of non-neuronal light-regulatable proteins using protein engineering and synthetic biology approaches.

This review highlights different protein engineering and synthetic biology approaches, which might aid in the development and optimization of novel optogenetic proteins (Opto-proteins). Focusing on non-neuronal optogenetics
Claim 25review scopesupports2022Source 1needs review

The review focuses on engineering and optimization of non-neuronal light-regulatable proteins using protein engineering and synthetic biology approaches.

This review highlights different protein engineering and synthetic biology approaches, which might aid in the development and optimization of novel optogenetic proteins (Opto-proteins). Focusing on non-neuronal optogenetics
Claim 26review scopesupports2022Source 1needs review

The review focuses on engineering and optimization of non-neuronal light-regulatable proteins using protein engineering and synthetic biology approaches.

This review highlights different protein engineering and synthetic biology approaches, which might aid in the development and optimization of novel optogenetic proteins (Opto-proteins). Focusing on non-neuronal optogenetics
Claim 27review scopesupports2022Source 1needs review

The review focuses on engineering and optimization of non-neuronal light-regulatable proteins using protein engineering and synthetic biology approaches.

This review highlights different protein engineering and synthetic biology approaches, which might aid in the development and optimization of novel optogenetic proteins (Opto-proteins). Focusing on non-neuronal optogenetics
Claim 28review scopesupports2022Source 1needs review

The review focuses on engineering and optimization of non-neuronal light-regulatable proteins using protein engineering and synthetic biology approaches.

This review highlights different protein engineering and synthetic biology approaches, which might aid in the development and optimization of novel optogenetic proteins (Opto-proteins). Focusing on non-neuronal optogenetics
Claim 29review scopesupports2022Source 1needs review

The review focuses on engineering and optimization of non-neuronal light-regulatable proteins using protein engineering and synthetic biology approaches.

This review highlights different protein engineering and synthetic biology approaches, which might aid in the development and optimization of novel optogenetic proteins (Opto-proteins). Focusing on non-neuronal optogenetics
Claim 30review scopesupports2022Source 1needs review

The review focuses on engineering and optimization of non-neuronal light-regulatable proteins using protein engineering and synthetic biology approaches.

This review highlights different protein engineering and synthetic biology approaches, which might aid in the development and optimization of novel optogenetic proteins (Opto-proteins). Focusing on non-neuronal optogenetics
Claim 31review scopesupports2022Source 1needs review

The review focuses on engineering and optimization of non-neuronal light-regulatable proteins using protein engineering and synthetic biology approaches.

This review highlights different protein engineering and synthetic biology approaches, which might aid in the development and optimization of novel optogenetic proteins (Opto-proteins). Focusing on non-neuronal optogenetics
Claim 32review scopesupports2022Source 1needs review

The review focuses on engineering and optimization of non-neuronal light-regulatable proteins using protein engineering and synthetic biology approaches.

This review highlights different protein engineering and synthetic biology approaches, which might aid in the development and optimization of novel optogenetic proteins (Opto-proteins). Focusing on non-neuronal optogenetics
Claim 33review scopesupports2022Source 1needs review

The review focuses on engineering and optimization of non-neuronal light-regulatable proteins using protein engineering and synthetic biology approaches.

This review highlights different protein engineering and synthetic biology approaches, which might aid in the development and optimization of novel optogenetic proteins (Opto-proteins). Focusing on non-neuronal optogenetics
Claim 34review scopesupports2022Source 1needs review

The review focuses on engineering and optimization of non-neuronal light-regulatable proteins using protein engineering and synthetic biology approaches.

This review highlights different protein engineering and synthetic biology approaches, which might aid in the development and optimization of novel optogenetic proteins (Opto-proteins). Focusing on non-neuronal optogenetics
Claim 35review scopesupports2022Source 1needs review

The review focuses on engineering and optimization of non-neuronal light-regulatable proteins using protein engineering and synthetic biology approaches.

This review highlights different protein engineering and synthetic biology approaches, which might aid in the development and optimization of novel optogenetic proteins (Opto-proteins). Focusing on non-neuronal optogenetics
Claim 36review scopesupports2022Source 1needs review

The review focuses on engineering and optimization of non-neuronal light-regulatable proteins using protein engineering and synthetic biology approaches.

This review highlights different protein engineering and synthetic biology approaches, which might aid in the development and optimization of novel optogenetic proteins (Opto-proteins). Focusing on non-neuronal optogenetics
Claim 37review scopesupports2022Source 1needs review

The review focuses on engineering and optimization of non-neuronal light-regulatable proteins using protein engineering and synthetic biology approaches.

This review highlights different protein engineering and synthetic biology approaches, which might aid in the development and optimization of novel optogenetic proteins (Opto-proteins). Focusing on non-neuronal optogenetics
Claim 38review scopesupports2022Source 1needs review

The review focuses on engineering and optimization of non-neuronal light-regulatable proteins using protein engineering and synthetic biology approaches.

This review highlights different protein engineering and synthetic biology approaches, which might aid in the development and optimization of novel optogenetic proteins (Opto-proteins). Focusing on non-neuronal optogenetics
Claim 39review scopesupports2022Source 1needs review

The review focuses on engineering and optimization of non-neuronal light-regulatable proteins using protein engineering and synthetic biology approaches.

This review highlights different protein engineering and synthetic biology approaches, which might aid in the development and optimization of novel optogenetic proteins (Opto-proteins). Focusing on non-neuronal optogenetics
Claim 40review scopesupports2022Source 1needs review

The review focuses on engineering and optimization of non-neuronal light-regulatable proteins using protein engineering and synthetic biology approaches.

This review highlights different protein engineering and synthetic biology approaches, which might aid in the development and optimization of novel optogenetic proteins (Opto-proteins). Focusing on non-neuronal optogenetics
Claim 41review scopesupports2022Source 1needs review

The review focuses on engineering and optimization of non-neuronal light-regulatable proteins using protein engineering and synthetic biology approaches.

This review highlights different protein engineering and synthetic biology approaches, which might aid in the development and optimization of novel optogenetic proteins (Opto-proteins). Focusing on non-neuronal optogenetics
Claim 42review scopesupports2022Source 1needs review

The review focuses on engineering and optimization of non-neuronal light-regulatable proteins using protein engineering and synthetic biology approaches.

This review highlights different protein engineering and synthetic biology approaches, which might aid in the development and optimization of novel optogenetic proteins (Opto-proteins). Focusing on non-neuronal optogenetics
Claim 43review scopesupports2022Source 1needs review

The review focuses on engineering and optimization of non-neuronal light-regulatable proteins using protein engineering and synthetic biology approaches.

This review highlights different protein engineering and synthetic biology approaches, which might aid in the development and optimization of novel optogenetic proteins (Opto-proteins). Focusing on non-neuronal optogenetics
Claim 44review scopesupports2022Source 1needs review

The review focuses on engineering and optimization of non-neuronal light-regulatable proteins using protein engineering and synthetic biology approaches.

This review highlights different protein engineering and synthetic biology approaches, which might aid in the development and optimization of novel optogenetic proteins (Opto-proteins). Focusing on non-neuronal optogenetics
Claim 45review scopesupports2022Source 1needs review

The review focuses on engineering and optimization of non-neuronal light-regulatable proteins using protein engineering and synthetic biology approaches.

This review highlights different protein engineering and synthetic biology approaches, which might aid in the development and optimization of novel optogenetic proteins (Opto-proteins). Focusing on non-neuronal optogenetics
Claim 46review scopesupports2022Source 1needs review

The review focuses on engineering and optimization of non-neuronal light-regulatable proteins using protein engineering and synthetic biology approaches.

This review highlights different protein engineering and synthetic biology approaches, which might aid in the development and optimization of novel optogenetic proteins (Opto-proteins). Focusing on non-neuronal optogenetics
Claim 47review scopesupports2022Source 1needs review

The review focuses on engineering and optimization of non-neuronal light-regulatable proteins using protein engineering and synthetic biology approaches.

This review highlights different protein engineering and synthetic biology approaches, which might aid in the development and optimization of novel optogenetic proteins (Opto-proteins). Focusing on non-neuronal optogenetics

Approval Evidence

1 source1 linked approval claimfirst-pass slug synthetic-biology-approaches-for-opto-protein-development
This review highlights different protein engineering and synthetic biology approaches, which might aid in the development and optimization of novel optogenetic proteins (Opto-proteins).

Source:

review scopesupports

The review focuses on engineering and optimization of non-neuronal light-regulatable proteins using protein engineering and synthetic biology approaches.

This review highlights different protein engineering and synthetic biology approaches, which might aid in the development and optimization of novel optogenetic proteins (Opto-proteins). Focusing on non-neuronal optogenetics

Source:

Comparisons

Source-backed strengths

A key strength is conceptual generality: the review discusses both photosensitive-domain modification and fusion to effector domains as design strategies for light control. The evidence supports relevance to both development and optimization of novel non-neuronal opto-proteins, but does not provide quantitative performance benchmarks.

Compared with CRY2 C-terminal tail

synthetic biology approaches for opto-protein development and CRY2 C-terminal tail address a similar problem space.

Shared frame: shared mechanisms: allosteric switching; same primary input modality: light

synthetic biology approaches for opto-protein development and doxycycline-dependent photoactivated gene expression address a similar problem space.

Shared frame: same top-level item type; same primary input modality: light

synthetic biology approaches for opto-protein development and oligomerization reactions address a similar problem space.

Shared frame: same top-level item type; same primary input modality: light

Ranked Citations

  1. 1.
    StructuralSource 1Frontiers in Bioengineering and Biotechnology2022Claim 20Claim 19Claim 19

    Seeded from load plan for claim cl1. Extracted from this source document.