First-pass extracted concept

Arabidopsis cryptochrome 2

Candidate: toolkit itemType: multi component switch11 source documents30 linked claims
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Aliases

Arabidopsis Cry2, Arabidopsis CRY2, cry2, Cry2, CRY2, cryptochrome 2

Evidence Snippets

Optogenetic induction of caspase-8 mediated apoptosis by employing Arabidopsis cryptochrome 2
Evidence 1Source 1DOIPubMedprovenance
Our strategies involve the light-sensitive protein Arabidopsis cryptochrome 2 and its binding partner CIB1.
Evidence 2Source 2DOIPubMedprovenance
Arabidopsis cryptochrome 2 (CRY2)
Evidence 3Source 3DOIPubMedprovenance
cryptochrome 2 (CRY2)
Evidence 4Source 4DOIPubMedprovenance
Molecular basis for blue light-dependent phosphorylation of Arabidopsis cryptochrome 2
Evidence 5Source 5DOIPubMedprovenance
Arabidopsis cryptochrome 2 (CRY2)
Evidence 6Source 6DOIPubMedprovenance
using noncovalent interactions with engineered Arabidopsis Cryptochrome 2 (Cry2)
Evidence 7Source 7DOIPubMedprovenance
we estimate the in vivo half-lives of the signaling states of cry1 and cry2
Evidence 8Source 8DOIPubMedprovenance
Arabidopsis cryptochrome 2 (CRY2)
Evidence 9Source 9DOIPubMedprovenance
Arabidopsis cryptochrome 2 (CRY2)
Evidence 10Source 10DOIPubMedprovenance
Here we have shown that Arabidopsis Cry2 undergoes a photocycle in which semireduced flavin (FADH(.)) accumulates upon blue light irradiation.
Evidence 11Source 11DOIPubMedprovenance

Supporting Sources

Linked Claims

Claim 1functional effectsupports2023Source 1DOIPubMed

Arabidopsis cryptochrome 2 is employed for optogenetic induction of caspase-8-mediated apoptosis.

Claim 2tool designsupports2018Source 2DOIPubMed

The paper presents four strategies for light-inducible activation of TrkA in the absence of NGF.

Quoted textsource-backed
Here we present the design and evaluation of four strategies for light-inducible activation of TrkA in the absence of NGF. Our strategies involve the light-sensitive protein Arabidopsis cryptochrome 2 and its binding partner CIB1.
Claim 3feedback circuitsupports2017Source 3DOIPubMed

CRY and BIC form a negative-feedback circuitry that regulates each other's activity.

Quoted textsource-backed
These results demonstrate a CRY-BIC negative-feedback circuitry that regulates the activity of each other.
Claim 4interaction propertysupports2017Source 4DOIPubMed

CRY2 and CIB1 interact upon light illumination.

Quoted textsource-backed
CRY2 and CIB1, Arabidopsis proteins that interact upon light illumination
Claim 5light dependent regulationsupports2017Source 5DOIPubMed

Arabidopsis cryptochrome 2 undergoes blue light-dependent phosphorylation.

Quoted textsource-backed
Molecular basis for blue light-dependent phosphorylation of Arabidopsis cryptochrome 2
Claim 6mechanistic dependencysupports2017Source 4DOIPubMed

The nuclear clearing phenotype depended on the presence of a dimerization domain in CRY2-fused transcriptional activators.

Quoted textsource-backed
The nuclear clearing phenotype was dependent on the presence of a dimerization domain contained within the CRY2-fused transcriptional activators.
Claim 7pathway mechanismsupports2017Source 3DOIPubMed

Cryptochromes activate BIC gene transcription by suppressing COP1 activity, resulting in activation of HY5 associated with chromatins of the BIC promoters.

Quoted textsource-backed
by suppressing the activity of CONSTITUTIVE PHOTOMORPHOGENIC 1 (COP1), resulting in activation of the transcription activator ELONGATED HYPOCOTYL 5 (HY5) that is associated with chromatins of the BIC promoters
Claim 8phenotype observationsupports2017Source 4DOIPubMed

In mammalian cells, CRY2-tethered proteins showed light-dependent redistribution and clearing within the nucleus.

Quoted textsource-backed
While adopting this approach to regulate transcription in mammalian cells, we observed light-dependent redistribution and clearing of CRY2-tethered proteins within the nucleus.
Claim 9physiological functionsupports2017Source 3DOIPubMed

Photoreceptor co-action in activating BIC transcription may sustain blue light sensitivity of plants under broad spectra of solar radiation in nature.

Quoted textsource-backed
suggesting a novel photoreceptor co-action mechanism to sustain blue light sensitivity of plants under the broad spectra of solar radiation in nature.
Claim 10regulatory mechanismsupports2017Source 3DOIPubMed

BIC1 and BIC2 inhibit Arabidopsis cryptochrome function by blocking blue light-dependent cryptochrome dimerization.

Quoted textsource-backed
two negative regulators of Arabidopsis cryptochromes, Blue light Inhibitors of Cryptochromes 1 and 2 (BIC1 and BIC2), inhibit cryptochrome function by blocking blue light-dependent cryptochrome dimerization
Claim 11transcriptional regulationsupports2017Source 3DOIPubMed

Cryptochromes mediate light activation of transcription of the BIC genes.

Quoted textsource-backed
Here we show that cryptochromes mediate light activation of transcription of the BIC genes
Claim 12activation mechanismsupports2016Source 6DOIPubMed

Arabidopsis cryptochrome 2 undergoes blue light-dependent homodimerization to become physiologically active.

Quoted textsource-backed
We found that Arabidopsis cryptochrome 2 (CRY2) undergoes blue light-dependent homodimerization to become physiologically active.
Claim 13homeostasis hypothesisneutral2016Source 6DOIPubMed

The authors hypothesize that regulated dimerization governs homeostasis of active cryptochromes in plants and other evolutionary lineages.

Quoted textsource-backed
We hypothesize that regulated dimerization governs homeostasis of the active cryptochromes in plants and other evolutionary lineages.
Claim 14inhibitory interactionsupports2016Source 6DOIPubMed

BIC1 binds to CRY2 and suppresses blue light-dependent dimerization, photobody formation, phosphorylation, degradation, and physiological activities of CRY2.

Quoted textsource-backed
We identified BIC1 (blue-light inhibitor of cryptochromes 1) as an inhibitor of plant cryptochromes that binds to CRY2 to suppress the blue light-dependent dimerization, photobody formation, phosphorylation, degradation, and physiological activities of CRY2.
Claim 15mechanismsupports2015Source 7locatorDOIPubMed

CLICR enables optical regulation of target receptor clustering and downstream signalling through noncovalent interactions with engineered Arabidopsis Cry2.

Quoted textsource-backed
enabled through the optical regulation of target receptor clustering and downstream signalling using noncovalent interactions with engineered Arabidopsis Cryptochrome 2 (Cry2)
Claim 16comparative stabilitysupports2013Source 8DOIPubMed

Plant cryptochrome signaling state lifetimes are not, or are only moderately, stabilized in planta relative to other measured contexts.

Quoted textsource-backed
Thus, the signaling state lifetimes of plant cryptochromes are not, or are only moderately, stabilized in planta.
Claim 17lifetime measurementsupports2013Source 8DOIPubMed

The in vivo half-life of the signaling state of Arabidopsis cry2 is about 16 minutes.

Quoted textsource-backed
we estimate the in vivo half-lives of the signaling states of cry1 and cry2 to be in the range of 5 and 16 min, respectively
Claim 18activity changesupports2011Source 9DOIPubMed

CRY2 trp-triad mutations tested lost photoreduction activity in vitro but retained physiological and biochemical activities in vivo.

Quoted textsource-backed
We found that all trp-triad mutations of CRY2 tested lost photoreduction activity in vitro but retained the physiological and biochemical activities in vivo.
Claim 19functional interpretationsupports2011Source 9DOIPubMed

The trp-triad residues are evolutionarily conserved in the photolyase/cryptochrome superfamily for structural integrity rather than for photochemistry per se.

Quoted textsource-backed
the trp-triad residues are evolutionarily conserved in the photolyase/cryptochrome superfamily for reasons of structural integrity rather than for photochemistry per se
Claim 20light responsesupports2011Source 9DOIPubMed

Some trp-triad mutations of CRY2 remained responsive to blue light, whereas CRY2(W374A) became constitutively active.

Quoted textsource-backed
Some of the trp-triad mutations of CRY2 remained responsive to blue light; others, such as CRY2(W374A), became constitutively active.
Claim 21mechanismsupports2011Source 9DOIPubMed

Arabidopsis CRY2 functions by a photoactivation mechanism distinct from trp-triad-dependent photoreduction.

Quoted textsource-backed
These results support the hypothesis that cryptochromes mediate blue-light responses via a photochemistry distinct from trp-triad-dependent photoreduction
Claim 22protein interactionsupports2011Source 9DOIPubMed

Wild-type CRY2 undergoes blue-light-dependent interaction with SPA1 and CIB1, whereas CRY2(W374A) interacts with SPA1 and CIB1 constitutively.

Quoted textsource-backed
In contrast to wild-type CRY2, which undergoes blue-light-dependent interaction with the CRY2-signaling proteins SUPPRESSOR OF PHYA 1 (SPA1) and cryptochrome-interaction basic helix-loop-helix 1 (CIB1), the constitutively active CRY2(W374A) interacts with SPA1 and CIB1 constitutively.
Claim 23active state compositionsupports2007Source 11DOIPubMed

The active form of Cry2 contains FADH(.) rather than the fully reduced flavin state required for catalytically active photolyase.

Quoted textsource-backed
These results demonstrate that the active form of Cry2 contains FADH(.) (whereas catalytically active photolyase requires fully reduced flavin (FADH(-))).
Claim 24functional differencesupports2007Source 11DOIPubMed

Cryptochromes may use flavin redox states for signaling differently from DNA-photolyase for photorepair.

Quoted textsource-backed
suggest that cryptochromes could represent photoreceptors using flavin redox states for signaling differently from DNA-photolyase for photorepair
Claim 25functional sufficiencysupports2007Source 10DOIPubMed

The 80-residue NC80 motif was sufficient to confer the physiological function of CRY2.

Quoted textsource-backed
Our results showed that an 80-residue motif, referred to as NC80, was sufficient to confer the physiological function of CRY2.
Claim 26light response modulationsupports2007Source 11DOIPubMed

Green light irradiation of Cry2 changes the equilibrium of flavin oxidation states and attenuates Cry2-controlled responses such as flowering.

Quoted textsource-backed
Green light irradiation of Cry2 causes a change in the equilibrium of flavin oxidation states and attenuates Cry2-controlled responses such as flowering.
Claim 27mechanistic inferencesupports2007Source 10DOIPubMed

Blue light-induced CRY2 phosphorylation likely causes a conformational change that derepresses the NC80 motif.

Quoted textsource-backed
suggesting that the blue light-induced CRY2 phosphorylation causes a conformational change to derepress the NC80 motif
Claim 28photocycle statesupports2007Source 11DOIPubMed

Arabidopsis Cry2 undergoes a photocycle in which semireduced flavin FADH(.) accumulates upon blue light irradiation.

Quoted textsource-backed
Here we have shown that Arabidopsis Cry2 undergoes a photocycle in which semireduced flavin (FADH(.)) accumulates upon blue light irradiation.
Claim 29requirement for phosphorylationsupports2007Source 10DOIPubMed

The CRY2 C-terminal tail is required for blue light-induced CRY2 phosphorylation but not for CRY2 activity.

Quoted textsource-backed
the CRY2 C-terminal tail was found to be required for the blue light-induced CRY2 phosphorylation but not for the CRY2 activity
Claim 30structural modelsupports2007Source 10DOIPubMed

In unphosphorylated CRY2, the PHR domain and C-terminal tail form a closed conformation that suppresses the NC80 motif, whereas blue light-induced phosphorylation promotes an open conformation that derepresses NC80 and triggers signal transduction.

Quoted textsource-backed
We propose that the PHR domain and the C-terminal tail of the unphosphorylated CRY2 form a "closed" conformation to suppress the NC80 motif in the absence of light. In response to blue light, the C-terminal tail of CRY2 is phosphorylated and electrostatically repelled from the surface of the PHR domain to form an "open" conformation, resulting in derepression of the NC80 motif and signal transduction to trigger photomorphogenic responses.