First-pass extracted concept

Avena sativa LOV2

Candidate: toolkit itemType: protein domain2 source documents17 linked claims
Live refresh every 5sNext refresh in 5s

Aliases

AsLOV2, LOV2

Evidence Snippets

In the present work, we focus on the allosteric pathways leading to Jα helix unfolding in Avena sativa LOV2 (AsLOV2)
Evidence 1Source 1DOIPubMedprovenance
we focus on the allosteric pathways leading to Jα helix unfolding in Avena sativa LOV2 (AsLOV2)
Evidence 2Source 1DOIPubMedprovenance
In Avena sativa LOV2 (AsLOV2), the photocycle is accompanied by an allosteric conformational change that activates the attached phototropin kinase in the full-length protein.
Evidence 3Source 2DOIPubMedprovenance

Supporting Sources

Linked Claims

Claim 1mechanismsupports2020Source 1DOIPubMed

In LOV2, blue light activation leads to formation of a Cys-FMN adduct, rotation of Q513, and unfolding of the Jα helix.

Quoted textsource-backed
In the C-terminal light-oxygen-voltage (LOV) domain of plant phototropins (LOV2), blue light activation leads to formation of an adduct between a conserved Cys residue and the embedded FMN chromophore, rotation of a conserved Gln (Q513), and unfolding of a helix (Jα-helix)
Claim 2mechanismsupports2020Source 1DOIPubMed

In LOV2, blue light activation leads to formation of a Cys-FMN adduct, rotation of Q513, and unfolding of the Jα helix.

Quoted textsource-backed
In the C-terminal light, oxygen, voltage (LOV) domain of plant phototropins (LOV2), blue light activation leads to formation of an adduct between a conserved Cys residue and the embedded FMN chromophore, rotation of a conserved Gln (Q513), and unfolding of a helix (Jα-helix)
Claim 3mechanismsupports2020Source 1DOIPubMed

In the dark state of AsLOV2, the side chain of N414 is hydrogen bonded to the backbone N-H of Q513.

Quoted textsource-backed
In the dark state, the side chain of N414 is hydrogen bonded to the backbone N-H of Q513.
Claim 4mechanismsupports2020Source 1DOIPubMed

Q513 and N414 are critical mediators of protein structural dynamics linking ultrafast FMN excitation to microsecond conformational changes that result in photoreceptor activation and biological function.

Quoted textsource-backed
Through this multifaceted approach, we show that Q513 and N414 are critical mediators of protein structural dynamics, linking the ultrafast (sub-ps) excitation of the FMN chromophore to the microsecond conformational changes that result in photoreceptor activation and biological function.
Claim 5mechanismsupports2020Source 1DOIPubMed

Q513 and N414 are critical mediators of protein structural dynamics linking ultrafast FMN excitation to microsecond conformational changes that result in photoreceptor activation and biological function.

Quoted textsource-backed
Through this multifaceted approach, we show that Q513 and N414 are critical mediators of protein structural dynamics, linking the ultrafast (sub-ps) excitation of the FMN chromophore to the microsecond conformational changes that result in photoreceptor activation and biological function.
Claim 6mechanismsupports2020Source 1DOIPubMed

Simulations predict that after Cys adduct formation, Q513 undergoes a lever-like motion that disrupts the N414-Q513 backbone interaction and forms a transient side-chain hydrogen bond between Q513 and N414.

Quoted textsource-backed
The simulations predict a lever-like motion of Q513 after Cys adduct formation resulting in loss of the interaction between the side chain of N414 and the backbone C=O of Q513, and formation of a transient hydrogen bond between the Q513 and N414 side chains.
Claim 7mechanistic predictionsupports2020Source 1DOIPubMed

Simulations predict that after Cys adduct formation, Q513 undergoes a lever-like motion that disrupts the N414-Q513 backbone interaction and forms a transient side-chain hydrogen bond between Q513 and N414.

Quoted textsource-backed
The simulations predict a lever-like motion of Q513 after Cys adduct formation resulting in a loss of the interaction between the side chain of N414 and the backbone C═O of Q513, and formation of a transient hydrogen bond between the Q513 and N414 side chains.
Claim 8structural statesupports2020Source 1DOIPubMed

In the dark state of AsLOV2, the side chain of N414 is hydrogen bonded to the backbone N-H of Q513.

Quoted textsource-backed
In the dark state, the side chain of N414 is hydrogen bonded to the backbone N-H of Q513.
Claim 9structure function linksupports2020Source 1DOIPubMed

Site-directed mutagenesis supports a direct link between Jα helix unfolding dynamics and the cellular function of the Zdk2-AsLOV2 optogenetic construct.

Quoted textsource-backed
The central role of N414 in signal transduction was evaluated by site-directed mutagenesis supporting a direct link between Jα helix unfolding dynamics and the cellular function of the Zdk2-AsLOV2 optogenetic construct.
Claim 10structure function relationshipsupports2020Source 1DOIPubMed

Site-directed mutagenesis supports a direct link between Jα helix unfolding dynamics and cellular function of the Zdk2-AsLOV2 optogenetic construct.

Quoted textsource-backed
The central role of N414 in signal transduction was evaluated by site-directed mutagenesis supporting a direct link between Jα helix unfolding dynamics and the cellular function of the Zdk2-AsLOV2 optogenetic construct.
Claim 11engineering resultsupports2014Source 2DOIPubMed

Some variants with the nearby cysteine moved to alternative locations can still photocycle.

Quoted textsource-backed
Finally, to investigate the requirements of an active-site cysteine for photocycling, we moved the nearby cysteine to alternative locations and found that some variants can still photocycle.
Claim 12environmental effectsupports2014Source 2DOIPubMed

Dehydration leads to drastically slower LOV photocycle times.

Quoted textsource-backed
In addition, we demonstrate that dehydration leads to drastically slower photocycle times.
Claim 13mechanismsupports2014Source 2DOIPubMed

In AsLOV2, the photocycle is accompanied by an allosteric conformational change that activates the attached phototropin kinase in the full-length protein.

Quoted textsource-backed
In Avena sativa LOV2 (AsLOV2), the photocycle is accompanied by an allosteric conformational change that activates the attached phototropin kinase in the full-length protein.
Claim 14mechanismsupports2014Source 2DOIPubMed

Mutations at N414 and Q513 identify a potential water gate and H2O coordination sites that affect chromophore electronics and photocycle time by helping catalyze N5 reduction.

Quoted textsource-backed
Mutations to the N414 and Q513 residues identify a potential water gate and H₂O coordination sites. These residues affect the electronic nature of the chromophore and photocycle time by helping catalyze the N5 reduction leading to the completion of the photocycle.
Claim 15mechanismsupports2014Source 2DOIPubMed

Reduction of the flavin N5 atom stabilizes both the conformational change and formation of the cysteinyl-flavin adduct in AsLOV2.

Quoted textsource-backed
Both the conformational change and formation of the cysteinyl-flavin adduct are stabilized by the reduction of the N5 atom in the flavin's isoalloxazine ring.
Claim 16mutational effectsupports2014Source 2DOIPubMed

Electronegative side chains near the chromophore accelerate N5 deprotonation and return to the dark state.

Quoted textsource-backed
However, electronegative side chains in the vicinity of the chromophore accelerate the N5 deprotonation and the return to the dark state.
Claim 17mutational effectsupports2014Source 2DOIPubMed

Mutating residues that interact with the chromophore isoalloxazine ring to inert functional groups did not fully inhibit the LOV2 photocycle except when the active-site cysteine was mutated.

Quoted textsource-backed
We mutated all the residues that interact with the chromophore isoalloxazine ring to inert functional groups but none could fully inhibit the photocycle except those to the active-site cysteine.