Toolkit/AsLOV2-Jα

AsLOV2-Jα

Protein Domain·Research·Since 2012

Also known as: AsLOV2-Jα domain, LOV-2-Jα photoswitch of phototropin1 from Avena sativa, photoswitch light-oxygen-voltage-2-Jα domain from Avena Sativa

Taxonomy: Mechanism Branch / Component. Workflows sit above the mechanism and technique branches rather than replacing them.

Summary

AsLOV2-Jα is the light-oxygen-voltage-2/Jα photoswitch domain from Avena sativa phototropin1. In the reported LOV-TAP fusion, ligation of AsLOV2-Jα to TrpR enables light-dependent control of DNA binding through photoinduced structural and electrostatic changes.

Usefulness & Problems

Why this is useful

AsLOV2-Jα is useful as a modular light-responsive domain for engineering allosteric control into fusion proteins. In the cited LOV-TAP system, it provides optical regulation of DNA association by coupling photoactivation to changes in Jα-helix docking, interdomain flexibility, and DNA-surface electrostatics.

Source:

we present in this paper a novel multiscale-modeling method, based on a combination of the kinetic Monte-Carlo- and MD-technique, and demonstrate its suitability for investigating the signaling behavior of the photoswitch light-oxygen-voltage-2-Jα domain from Avena Sativa (AsLOV2-Jα) and an AsLOV2-Jα-regulated photoactivable Rac1-GTPase (PA-Rac1)

Problem solved

This domain helps solve the problem of imposing reversible light control over protein-DNA interactions in an engineered signaling construct. The cited work specifically addresses how a photosensory module can be fused to TrpR to switch DNA binding through allosteric transduction.

Problem links

Need conditional control of signaling activity

Derived

AsLOV2-Jα is the LOV2-Jα photoswitch domain from Avena sativa phototropin1. In the cited LOV-TAP construct, this domain confers light-dependent control of DNA binding by undergoing photoinduced structural changes that alter electrostatic interactions with DNA.

Need precise spatiotemporal control with light input

Derived

AsLOV2-Jα is the LOV2-Jα photoswitch domain from Avena sativa phototropin1. In the cited LOV-TAP construct, this domain confers light-dependent control of DNA binding by undergoing photoinduced structural changes that alter electrostatic interactions with DNA.

Taxonomy & Function

Implementation Constraints

cofactor dependency: cofactor requirement unknownencoding mode: genetically encodedimplementation constraint: context specific validationimplementation constraint: spectral hardware requirementoperating role: actuatoroperating role: regulatorswitch architecture: cleavageswitch architecture: uncaging

The cited implementation uses AsLOV2-Jα as a fusion partner ligated to TrpR in the artificial LOV-TAP construct. Mechanistic operation depends on the LOV-domain FMN chromophore and photoinduced formation of a Cys450-FMN adduct; beyond this, the supplied evidence does not provide expression, delivery, or construct-optimization details.

The evidence provided is narrow and comes from a 2012 computer simulation study rather than broad experimental validation. Reported function is specific to the LOV-TAP fusion with TrpR, and the supplied sources do not establish general performance, kinetics, wavelength dependence, or independent replication across other constructs or organisms.

Validation

Cell-freeBacteriaMammalianMouseHumanTherapeuticIndep. Replication

Supporting Sources

Ranked Claims

Claim 1compositionsupports2012Source 2needs review

LOV-TAP is an artificial protein construct in which AsLOV2-Jα is ligated to TrpR.

the artificial protein construct light-oxygen-voltage (LOV)-tryptophan-activated protein (TAP), in which the LOV-2-Jα photoswitch of phototropin1 from Avena sativa (AsLOV2-Jα) has been ligated to the tryptophan-repressor (TrpR) protein from Escherichia coli
Claim 2compositionsupports2012Source 2needs review

LOV-TAP is an artificial protein construct in which AsLOV2-Jα is ligated to TrpR.

the artificial protein construct light-oxygen-voltage (LOV)-tryptophan-activated protein (TAP), in which the LOV-2-Jα photoswitch of phototropin1 from Avena sativa (AsLOV2-Jα) has been ligated to the tryptophan-repressor (TrpR) protein from Escherichia coli
Claim 3compositionsupports2012Source 2needs review

LOV-TAP is an artificial protein construct in which AsLOV2-Jα is ligated to TrpR.

the artificial protein construct light-oxygen-voltage (LOV)-tryptophan-activated protein (TAP), in which the LOV-2-Jα photoswitch of phototropin1 from Avena sativa (AsLOV2-Jα) has been ligated to the tryptophan-repressor (TrpR) protein from Escherichia coli
Claim 4compositionsupports2012Source 2needs review

LOV-TAP is an artificial protein construct in which AsLOV2-Jα is ligated to TrpR.

the artificial protein construct light-oxygen-voltage (LOV)-tryptophan-activated protein (TAP), in which the LOV-2-Jα photoswitch of phototropin1 from Avena sativa (AsLOV2-Jα) has been ligated to the tryptophan-repressor (TrpR) protein from Escherichia coli
Claim 5compositionsupports2012Source 2needs review

LOV-TAP is an artificial protein construct in which AsLOV2-Jα is ligated to TrpR.

the artificial protein construct light-oxygen-voltage (LOV)-tryptophan-activated protein (TAP), in which the LOV-2-Jα photoswitch of phototropin1 from Avena sativa (AsLOV2-Jα) has been ligated to the tryptophan-repressor (TrpR) protein from Escherichia coli
Claim 6compositionsupports2012Source 2needs review

LOV-TAP is an artificial protein construct in which AsLOV2-Jα is ligated to TrpR.

the artificial protein construct light-oxygen-voltage (LOV)-tryptophan-activated protein (TAP), in which the LOV-2-Jα photoswitch of phototropin1 from Avena sativa (AsLOV2-Jα) has been ligated to the tryptophan-repressor (TrpR) protein from Escherichia coli
Claim 7compositionsupports2012Source 2needs review

LOV-TAP is an artificial protein construct in which AsLOV2-Jα is ligated to TrpR.

the artificial protein construct light-oxygen-voltage (LOV)-tryptophan-activated protein (TAP), in which the LOV-2-Jα photoswitch of phototropin1 from Avena sativa (AsLOV2-Jα) has been ligated to the tryptophan-repressor (TrpR) protein from Escherichia coli
Claim 8compositionsupports2012Source 2needs review

LOV-TAP is an artificial protein construct in which AsLOV2-Jα is ligated to TrpR.

the artificial protein construct light-oxygen-voltage (LOV)-tryptophan-activated protein (TAP), in which the LOV-2-Jα photoswitch of phototropin1 from Avena sativa (AsLOV2-Jα) has been ligated to the tryptophan-repressor (TrpR) protein from Escherichia coli
Claim 9compositionsupports2012Source 2needs review

LOV-TAP is an artificial protein construct in which AsLOV2-Jα is ligated to TrpR.

the artificial protein construct light-oxygen-voltage (LOV)-tryptophan-activated protein (TAP), in which the LOV-2-Jα photoswitch of phototropin1 from Avena sativa (AsLOV2-Jα) has been ligated to the tryptophan-repressor (TrpR) protein from Escherichia coli
Claim 10compositionsupports2012Source 2needs review

LOV-TAP is an artificial protein construct in which AsLOV2-Jα is ligated to TrpR.

the artificial protein construct light-oxygen-voltage (LOV)-tryptophan-activated protein (TAP), in which the LOV-2-Jα photoswitch of phototropin1 from Avena sativa (AsLOV2-Jα) has been ligated to the tryptophan-repressor (TrpR) protein from Escherichia coli
Claim 11compositionsupports2012Source 2needs review

LOV-TAP is an artificial protein construct in which AsLOV2-Jα is ligated to TrpR.

the artificial protein construct light-oxygen-voltage (LOV)-tryptophan-activated protein (TAP), in which the LOV-2-Jα photoswitch of phototropin1 from Avena sativa (AsLOV2-Jα) has been ligated to the tryptophan-repressor (TrpR) protein from Escherichia coli
Claim 12compositionsupports2012Source 2needs review

LOV-TAP is an artificial protein construct in which AsLOV2-Jα is ligated to TrpR.

the artificial protein construct light-oxygen-voltage (LOV)-tryptophan-activated protein (TAP), in which the LOV-2-Jα photoswitch of phototropin1 from Avena sativa (AsLOV2-Jα) has been ligated to the tryptophan-repressor (TrpR) protein from Escherichia coli
Claim 13compositionsupports2012Source 2needs review

LOV-TAP is an artificial protein construct in which AsLOV2-Jα is ligated to TrpR.

the artificial protein construct light-oxygen-voltage (LOV)-tryptophan-activated protein (TAP), in which the LOV-2-Jα photoswitch of phototropin1 from Avena sativa (AsLOV2-Jα) has been ligated to the tryptophan-repressor (TrpR) protein from Escherichia coli
Claim 14compositionsupports2012Source 2needs review

LOV-TAP is an artificial protein construct in which AsLOV2-Jα is ligated to TrpR.

the artificial protein construct light-oxygen-voltage (LOV)-tryptophan-activated protein (TAP), in which the LOV-2-Jα photoswitch of phototropin1 from Avena sativa (AsLOV2-Jα) has been ligated to the tryptophan-repressor (TrpR) protein from Escherichia coli
Claim 15compositionsupports2012Source 2needs review

LOV-TAP is an artificial protein construct in which AsLOV2-Jα is ligated to TrpR.

the artificial protein construct light-oxygen-voltage (LOV)-tryptophan-activated protein (TAP), in which the LOV-2-Jα photoswitch of phototropin1 from Avena sativa (AsLOV2-Jα) has been ligated to the tryptophan-repressor (TrpR) protein from Escherichia coli
Claim 16compositionsupports2012Source 2needs review

LOV-TAP is an artificial protein construct in which AsLOV2-Jα is ligated to TrpR.

the artificial protein construct light-oxygen-voltage (LOV)-tryptophan-activated protein (TAP), in which the LOV-2-Jα photoswitch of phototropin1 from Avena sativa (AsLOV2-Jα) has been ligated to the tryptophan-repressor (TrpR) protein from Escherichia coli
Claim 17compositionsupports2012Source 2needs review

LOV-TAP is an artificial protein construct in which AsLOV2-Jα is ligated to TrpR.

the artificial protein construct light-oxygen-voltage (LOV)-tryptophan-activated protein (TAP), in which the LOV-2-Jα photoswitch of phototropin1 from Avena sativa (AsLOV2-Jα) has been ligated to the tryptophan-repressor (TrpR) protein from Escherichia coli
Claim 18mechanismsupports2012Source 2needs review

After photoexcitation, Cys450-FMN adduct formation in the AsLOV2-Jα binding pocket induces cleavage of the peripheral Jα-helix from the LOV core.

Cys450-FMN-adduct formation in the AsLOV2-Jα-binding pocket after photoexcitation induces the cleavage of the peripheral Jα-helix from the LOV core
Claim 19mechanismsupports2012Source 2needs review

After photoexcitation, Cys450-FMN adduct formation in the AsLOV2-Jα binding pocket induces cleavage of the peripheral Jα-helix from the LOV core.

Cys450-FMN-adduct formation in the AsLOV2-Jα-binding pocket after photoexcitation induces the cleavage of the peripheral Jα-helix from the LOV core
Claim 20mechanismsupports2012Source 2needs review

After photoexcitation, Cys450-FMN adduct formation in the AsLOV2-Jα binding pocket induces cleavage of the peripheral Jα-helix from the LOV core.

Cys450-FMN-adduct formation in the AsLOV2-Jα-binding pocket after photoexcitation induces the cleavage of the peripheral Jα-helix from the LOV core
Claim 21mechanismsupports2012Source 2needs review

After photoexcitation, Cys450-FMN adduct formation in the AsLOV2-Jα binding pocket induces cleavage of the peripheral Jα-helix from the LOV core.

Cys450-FMN-adduct formation in the AsLOV2-Jα-binding pocket after photoexcitation induces the cleavage of the peripheral Jα-helix from the LOV core
Claim 22mechanismsupports2012Source 2needs review

After photoexcitation, Cys450-FMN adduct formation in the AsLOV2-Jα binding pocket induces cleavage of the peripheral Jα-helix from the LOV core.

Cys450-FMN-adduct formation in the AsLOV2-Jα-binding pocket after photoexcitation induces the cleavage of the peripheral Jα-helix from the LOV core
Claim 23mechanismsupports2012Source 2needs review

After photoexcitation, Cys450-FMN adduct formation in the AsLOV2-Jα binding pocket induces cleavage of the peripheral Jα-helix from the LOV core.

Cys450-FMN-adduct formation in the AsLOV2-Jα-binding pocket after photoexcitation induces the cleavage of the peripheral Jα-helix from the LOV core
Claim 24mechanismsupports2012Source 2needs review

After photoexcitation, Cys450-FMN adduct formation in the AsLOV2-Jα binding pocket induces cleavage of the peripheral Jα-helix from the LOV core.

Cys450-FMN-adduct formation in the AsLOV2-Jα-binding pocket after photoexcitation induces the cleavage of the peripheral Jα-helix from the LOV core
Claim 25mechanismsupports2012Source 2needs review

After photoexcitation, Cys450-FMN adduct formation in the AsLOV2-Jα binding pocket induces cleavage of the peripheral Jα-helix from the LOV core.

Cys450-FMN-adduct formation in the AsLOV2-Jα-binding pocket after photoexcitation induces the cleavage of the peripheral Jα-helix from the LOV core
Claim 26mechanismsupports2012Source 2needs review

After photoexcitation, Cys450-FMN adduct formation in the AsLOV2-Jα binding pocket induces cleavage of the peripheral Jα-helix from the LOV core.

Cys450-FMN-adduct formation in the AsLOV2-Jα-binding pocket after photoexcitation induces the cleavage of the peripheral Jα-helix from the LOV core
Claim 27mechanismsupports2012Source 2needs review

After photoexcitation, Cys450-FMN adduct formation in the AsLOV2-Jα binding pocket induces cleavage of the peripheral Jα-helix from the LOV core.

Cys450-FMN-adduct formation in the AsLOV2-Jα-binding pocket after photoexcitation induces the cleavage of the peripheral Jα-helix from the LOV core
Claim 28mechanismsupports2012Source 2needs review

After photoexcitation, Cys450-FMN adduct formation in the AsLOV2-Jα binding pocket induces cleavage of the peripheral Jα-helix from the LOV core.

Cys450-FMN-adduct formation in the AsLOV2-Jα-binding pocket after photoexcitation induces the cleavage of the peripheral Jα-helix from the LOV core
Claim 29mechanismsupports2012Source 2needs review

After photoexcitation, Cys450-FMN adduct formation in the AsLOV2-Jα binding pocket induces cleavage of the peripheral Jα-helix from the LOV core.

Cys450-FMN-adduct formation in the AsLOV2-Jα-binding pocket after photoexcitation induces the cleavage of the peripheral Jα-helix from the LOV core
Claim 30mechanismsupports2012Source 2needs review

After photoexcitation, Cys450-FMN adduct formation in the AsLOV2-Jα binding pocket induces cleavage of the peripheral Jα-helix from the LOV core.

Cys450-FMN-adduct formation in the AsLOV2-Jα-binding pocket after photoexcitation induces the cleavage of the peripheral Jα-helix from the LOV core
Claim 31mechanismsupports2012Source 2needs review

After photoexcitation, Cys450-FMN adduct formation in the AsLOV2-Jα binding pocket induces cleavage of the peripheral Jα-helix from the LOV core.

Cys450-FMN-adduct formation in the AsLOV2-Jα-binding pocket after photoexcitation induces the cleavage of the peripheral Jα-helix from the LOV core
Claim 32mechanismsupports2012Source 2needs review

After photoexcitation, Cys450-FMN adduct formation in the AsLOV2-Jα binding pocket induces cleavage of the peripheral Jα-helix from the LOV core.

Cys450-FMN-adduct formation in the AsLOV2-Jα-binding pocket after photoexcitation induces the cleavage of the peripheral Jα-helix from the LOV core
Claim 33mechanismsupports2012Source 2needs review

After photoexcitation, Cys450-FMN adduct formation in the AsLOV2-Jα binding pocket induces cleavage of the peripheral Jα-helix from the LOV core.

Cys450-FMN-adduct formation in the AsLOV2-Jα-binding pocket after photoexcitation induces the cleavage of the peripheral Jα-helix from the LOV core
Claim 34mechanismsupports2012Source 2needs review

After photoexcitation, Cys450-FMN adduct formation in the AsLOV2-Jα binding pocket induces cleavage of the peripheral Jα-helix from the LOV core.

Cys450-FMN-adduct formation in the AsLOV2-Jα-binding pocket after photoexcitation induces the cleavage of the peripheral Jα-helix from the LOV core
Claim 35mechanismsupports2012Source 2needs review

In the dark state, the AsLOV2-Jα photoswitch exerts a repulsive electrostatic force on the DNA surface, leading to distortion of the hairpin region and disruption of LOV-TAP from DNA.

in the dark state the AsLOV2-Jα photoswitch remains inactive and exerts a repulsive electrostatic force on the DNA surface. This leads to a distortion of the hairpin region, which finally relieves its tension by causing the disruption of LOV-TAP from the DNA.
Claim 36mechanismsupports2012Source 2needs review

In the dark state, the AsLOV2-Jα photoswitch exerts a repulsive electrostatic force on the DNA surface, leading to distortion of the hairpin region and disruption of LOV-TAP from DNA.

in the dark state the AsLOV2-Jα photoswitch remains inactive and exerts a repulsive electrostatic force on the DNA surface. This leads to a distortion of the hairpin region, which finally relieves its tension by causing the disruption of LOV-TAP from the DNA.
Claim 37mechanismsupports2012Source 2needs review

In the dark state, the AsLOV2-Jα photoswitch exerts a repulsive electrostatic force on the DNA surface, leading to distortion of the hairpin region and disruption of LOV-TAP from DNA.

in the dark state the AsLOV2-Jα photoswitch remains inactive and exerts a repulsive electrostatic force on the DNA surface. This leads to a distortion of the hairpin region, which finally relieves its tension by causing the disruption of LOV-TAP from the DNA.
Claim 38mechanismsupports2012Source 2needs review

In the dark state, the AsLOV2-Jα photoswitch exerts a repulsive electrostatic force on the DNA surface, leading to distortion of the hairpin region and disruption of LOV-TAP from DNA.

in the dark state the AsLOV2-Jα photoswitch remains inactive and exerts a repulsive electrostatic force on the DNA surface. This leads to a distortion of the hairpin region, which finally relieves its tension by causing the disruption of LOV-TAP from the DNA.
Claim 39mechanismsupports2012Source 2needs review

In the dark state, the AsLOV2-Jα photoswitch exerts a repulsive electrostatic force on the DNA surface, leading to distortion of the hairpin region and disruption of LOV-TAP from DNA.

in the dark state the AsLOV2-Jα photoswitch remains inactive and exerts a repulsive electrostatic force on the DNA surface. This leads to a distortion of the hairpin region, which finally relieves its tension by causing the disruption of LOV-TAP from the DNA.
Claim 40mechanismsupports2012Source 2needs review

In the dark state, the AsLOV2-Jα photoswitch exerts a repulsive electrostatic force on the DNA surface, leading to distortion of the hairpin region and disruption of LOV-TAP from DNA.

in the dark state the AsLOV2-Jα photoswitch remains inactive and exerts a repulsive electrostatic force on the DNA surface. This leads to a distortion of the hairpin region, which finally relieves its tension by causing the disruption of LOV-TAP from the DNA.
Claim 41mechanismsupports2012Source 2needs review

In the dark state, the AsLOV2-Jα photoswitch exerts a repulsive electrostatic force on the DNA surface, leading to distortion of the hairpin region and disruption of LOV-TAP from DNA.

in the dark state the AsLOV2-Jα photoswitch remains inactive and exerts a repulsive electrostatic force on the DNA surface. This leads to a distortion of the hairpin region, which finally relieves its tension by causing the disruption of LOV-TAP from the DNA.
Claim 42mechanismsupports2012Source 2needs review

In the dark state, the AsLOV2-Jα photoswitch exerts a repulsive electrostatic force on the DNA surface, leading to distortion of the hairpin region and disruption of LOV-TAP from DNA.

in the dark state the AsLOV2-Jα photoswitch remains inactive and exerts a repulsive electrostatic force on the DNA surface. This leads to a distortion of the hairpin region, which finally relieves its tension by causing the disruption of LOV-TAP from the DNA.
Claim 43mechanismsupports2012Source 2needs review

In the dark state, the AsLOV2-Jα photoswitch exerts a repulsive electrostatic force on the DNA surface, leading to distortion of the hairpin region and disruption of LOV-TAP from DNA.

in the dark state the AsLOV2-Jα photoswitch remains inactive and exerts a repulsive electrostatic force on the DNA surface. This leads to a distortion of the hairpin region, which finally relieves its tension by causing the disruption of LOV-TAP from the DNA.
Claim 44mechanismsupports2012Source 2needs review

In the dark state, the AsLOV2-Jα photoswitch exerts a repulsive electrostatic force on the DNA surface, leading to distortion of the hairpin region and disruption of LOV-TAP from DNA.

in the dark state the AsLOV2-Jα photoswitch remains inactive and exerts a repulsive electrostatic force on the DNA surface. This leads to a distortion of the hairpin region, which finally relieves its tension by causing the disruption of LOV-TAP from the DNA.
Claim 45mechanismsupports2012Source 2needs review

In the dark state, the AsLOV2-Jα photoswitch exerts a repulsive electrostatic force on the DNA surface, leading to distortion of the hairpin region and disruption of LOV-TAP from DNA.

in the dark state the AsLOV2-Jα photoswitch remains inactive and exerts a repulsive electrostatic force on the DNA surface. This leads to a distortion of the hairpin region, which finally relieves its tension by causing the disruption of LOV-TAP from the DNA.
Claim 46mechanismsupports2012Source 2needs review

In the dark state, the AsLOV2-Jα photoswitch exerts a repulsive electrostatic force on the DNA surface, leading to distortion of the hairpin region and disruption of LOV-TAP from DNA.

in the dark state the AsLOV2-Jα photoswitch remains inactive and exerts a repulsive electrostatic force on the DNA surface. This leads to a distortion of the hairpin region, which finally relieves its tension by causing the disruption of LOV-TAP from the DNA.
Claim 47mechanismsupports2012Source 2needs review

In the dark state, the AsLOV2-Jα photoswitch exerts a repulsive electrostatic force on the DNA surface, leading to distortion of the hairpin region and disruption of LOV-TAP from DNA.

in the dark state the AsLOV2-Jα photoswitch remains inactive and exerts a repulsive electrostatic force on the DNA surface. This leads to a distortion of the hairpin region, which finally relieves its tension by causing the disruption of LOV-TAP from the DNA.
Claim 48mechanismsupports2012Source 2needs review

In the dark state, the AsLOV2-Jα photoswitch exerts a repulsive electrostatic force on the DNA surface, leading to distortion of the hairpin region and disruption of LOV-TAP from DNA.

in the dark state the AsLOV2-Jα photoswitch remains inactive and exerts a repulsive electrostatic force on the DNA surface. This leads to a distortion of the hairpin region, which finally relieves its tension by causing the disruption of LOV-TAP from the DNA.
Claim 49mechanismsupports2012Source 2needs review

In the dark state, the AsLOV2-Jα photoswitch exerts a repulsive electrostatic force on the DNA surface, leading to distortion of the hairpin region and disruption of LOV-TAP from DNA.

in the dark state the AsLOV2-Jα photoswitch remains inactive and exerts a repulsive electrostatic force on the DNA surface. This leads to a distortion of the hairpin region, which finally relieves its tension by causing the disruption of LOV-TAP from the DNA.
Claim 50mechanismsupports2012Source 2needs review

In the dark state, the AsLOV2-Jα photoswitch exerts a repulsive electrostatic force on the DNA surface, leading to distortion of the hairpin region and disruption of LOV-TAP from DNA.

in the dark state the AsLOV2-Jα photoswitch remains inactive and exerts a repulsive electrostatic force on the DNA surface. This leads to a distortion of the hairpin region, which finally relieves its tension by causing the disruption of LOV-TAP from the DNA.
Claim 51mechanismsupports2012Source 2needs review

In the dark state, the AsLOV2-Jα photoswitch exerts a repulsive electrostatic force on the DNA surface, leading to distortion of the hairpin region and disruption of LOV-TAP from DNA.

in the dark state the AsLOV2-Jα photoswitch remains inactive and exerts a repulsive electrostatic force on the DNA surface. This leads to a distortion of the hairpin region, which finally relieves its tension by causing the disruption of LOV-TAP from the DNA.
Claim 52mechanismsupports2012Source 2needs review

Light activation changes the polarity of the LOV photoswitch and promotes electrostatic attraction of LOV-TAP onto the DNA surface.

causing a change of its polarity and electrostatic attraction of the photoswitch onto the DNA surface
Claim 53mechanismsupports2012Source 2needs review

Light activation changes the polarity of the LOV photoswitch and promotes electrostatic attraction of LOV-TAP onto the DNA surface.

causing a change of its polarity and electrostatic attraction of the photoswitch onto the DNA surface
Claim 54mechanismsupports2012Source 2needs review

Light activation changes the polarity of the LOV photoswitch and promotes electrostatic attraction of LOV-TAP onto the DNA surface.

causing a change of its polarity and electrostatic attraction of the photoswitch onto the DNA surface
Claim 55mechanismsupports2012Source 2needs review

Light activation changes the polarity of the LOV photoswitch and promotes electrostatic attraction of LOV-TAP onto the DNA surface.

causing a change of its polarity and electrostatic attraction of the photoswitch onto the DNA surface
Claim 56mechanismsupports2012Source 2needs review

Light activation changes the polarity of the LOV photoswitch and promotes electrostatic attraction of LOV-TAP onto the DNA surface.

causing a change of its polarity and electrostatic attraction of the photoswitch onto the DNA surface
Claim 57mechanismsupports2012Source 2needs review

Light activation changes the polarity of the LOV photoswitch and promotes electrostatic attraction of LOV-TAP onto the DNA surface.

causing a change of its polarity and electrostatic attraction of the photoswitch onto the DNA surface
Claim 58mechanismsupports2012Source 2needs review

Light activation changes the polarity of the LOV photoswitch and promotes electrostatic attraction of LOV-TAP onto the DNA surface.

causing a change of its polarity and electrostatic attraction of the photoswitch onto the DNA surface
Claim 59mechanismsupports2012Source 2needs review

Light activation changes the polarity of the LOV photoswitch and promotes electrostatic attraction of LOV-TAP onto the DNA surface.

causing a change of its polarity and electrostatic attraction of the photoswitch onto the DNA surface
Claim 60mechanismsupports2012Source 2needs review

Light activation changes the polarity of the LOV photoswitch and promotes electrostatic attraction of LOV-TAP onto the DNA surface.

causing a change of its polarity and electrostatic attraction of the photoswitch onto the DNA surface
Claim 61mechanismsupports2012Source 2needs review

Light activation changes the polarity of the LOV photoswitch and promotes electrostatic attraction of LOV-TAP onto the DNA surface.

causing a change of its polarity and electrostatic attraction of the photoswitch onto the DNA surface
Claim 62mechanismsupports2012Source 2needs review

Light activation changes the polarity of the LOV photoswitch and promotes electrostatic attraction of LOV-TAP onto the DNA surface.

causing a change of its polarity and electrostatic attraction of the photoswitch onto the DNA surface
Claim 63mechanismsupports2012Source 2needs review

Light activation changes the polarity of the LOV photoswitch and promotes electrostatic attraction of LOV-TAP onto the DNA surface.

causing a change of its polarity and electrostatic attraction of the photoswitch onto the DNA surface
Claim 64mechanismsupports2012Source 2needs review

Light activation changes the polarity of the LOV photoswitch and promotes electrostatic attraction of LOV-TAP onto the DNA surface.

causing a change of its polarity and electrostatic attraction of the photoswitch onto the DNA surface
Claim 65mechanismsupports2012Source 2needs review

Light activation changes the polarity of the LOV photoswitch and promotes electrostatic attraction of LOV-TAP onto the DNA surface.

causing a change of its polarity and electrostatic attraction of the photoswitch onto the DNA surface
Claim 66mechanismsupports2012Source 2needs review

Light activation changes the polarity of the LOV photoswitch and promotes electrostatic attraction of LOV-TAP onto the DNA surface.

causing a change of its polarity and electrostatic attraction of the photoswitch onto the DNA surface
Claim 67mechanismsupports2012Source 2needs review

Light activation changes the polarity of the LOV photoswitch and promotes electrostatic attraction of LOV-TAP onto the DNA surface.

causing a change of its polarity and electrostatic attraction of the photoswitch onto the DNA surface
Claim 68mechanismsupports2012Source 2needs review

Light activation changes the polarity of the LOV photoswitch and promotes electrostatic attraction of LOV-TAP onto the DNA surface.

causing a change of its polarity and electrostatic attraction of the photoswitch onto the DNA surface
Claim 69mechanismsupports2012Source 2needs review

Unfolding and flexibilization of the interdomain hairpin-like helix-loop-helix region enables condensation of LOV-TAP onto the DNA surface.

This goes along with the flexibilization through unfolding of a hairpin-like helix-loop-helix region interlinking the AsLOV2-Jα- and TrpR-domains, ultimately enabling the condensation of LOV-TAP onto the DNA surface.
Claim 70mechanismsupports2012Source 2needs review

Unfolding and flexibilization of the interdomain hairpin-like helix-loop-helix region enables condensation of LOV-TAP onto the DNA surface.

This goes along with the flexibilization through unfolding of a hairpin-like helix-loop-helix region interlinking the AsLOV2-Jα- and TrpR-domains, ultimately enabling the condensation of LOV-TAP onto the DNA surface.
Claim 71mechanismsupports2012Source 2needs review

Unfolding and flexibilization of the interdomain hairpin-like helix-loop-helix region enables condensation of LOV-TAP onto the DNA surface.

This goes along with the flexibilization through unfolding of a hairpin-like helix-loop-helix region interlinking the AsLOV2-Jα- and TrpR-domains, ultimately enabling the condensation of LOV-TAP onto the DNA surface.
Claim 72mechanismsupports2012Source 2needs review

Unfolding and flexibilization of the interdomain hairpin-like helix-loop-helix region enables condensation of LOV-TAP onto the DNA surface.

This goes along with the flexibilization through unfolding of a hairpin-like helix-loop-helix region interlinking the AsLOV2-Jα- and TrpR-domains, ultimately enabling the condensation of LOV-TAP onto the DNA surface.
Claim 73mechanismsupports2012Source 2needs review

Unfolding and flexibilization of the interdomain hairpin-like helix-loop-helix region enables condensation of LOV-TAP onto the DNA surface.

This goes along with the flexibilization through unfolding of a hairpin-like helix-loop-helix region interlinking the AsLOV2-Jα- and TrpR-domains, ultimately enabling the condensation of LOV-TAP onto the DNA surface.
Claim 74mechanismsupports2012Source 2needs review

Unfolding and flexibilization of the interdomain hairpin-like helix-loop-helix region enables condensation of LOV-TAP onto the DNA surface.

This goes along with the flexibilization through unfolding of a hairpin-like helix-loop-helix region interlinking the AsLOV2-Jα- and TrpR-domains, ultimately enabling the condensation of LOV-TAP onto the DNA surface.
Claim 75mechanismsupports2012Source 2needs review

Unfolding and flexibilization of the interdomain hairpin-like helix-loop-helix region enables condensation of LOV-TAP onto the DNA surface.

This goes along with the flexibilization through unfolding of a hairpin-like helix-loop-helix region interlinking the AsLOV2-Jα- and TrpR-domains, ultimately enabling the condensation of LOV-TAP onto the DNA surface.
Claim 76mechanismsupports2012Source 2needs review

Unfolding and flexibilization of the interdomain hairpin-like helix-loop-helix region enables condensation of LOV-TAP onto the DNA surface.

This goes along with the flexibilization through unfolding of a hairpin-like helix-loop-helix region interlinking the AsLOV2-Jα- and TrpR-domains, ultimately enabling the condensation of LOV-TAP onto the DNA surface.
Claim 77mechanismsupports2012Source 2needs review

Unfolding and flexibilization of the interdomain hairpin-like helix-loop-helix region enables condensation of LOV-TAP onto the DNA surface.

This goes along with the flexibilization through unfolding of a hairpin-like helix-loop-helix region interlinking the AsLOV2-Jα- and TrpR-domains, ultimately enabling the condensation of LOV-TAP onto the DNA surface.
Claim 78mechanismsupports2012Source 2needs review

Unfolding and flexibilization of the interdomain hairpin-like helix-loop-helix region enables condensation of LOV-TAP onto the DNA surface.

This goes along with the flexibilization through unfolding of a hairpin-like helix-loop-helix region interlinking the AsLOV2-Jα- and TrpR-domains, ultimately enabling the condensation of LOV-TAP onto the DNA surface.
Claim 79mechanistic pathwaysupports2012Source 1needs review

In PA-Rac1, detachment of the peripheral alpha-helix induces release of the AsLOV2 inhibitor from the switchII activation site of the GTPase, enabling signal activation through effector-protein binding.

In the case of the PA-Rac1 system we find that this latter process induces the release of the AsLOV2-inhibitor from the switchII-activation site of the GTPase, enabling signal activation through effector-protein binding
Claim 80mechanistic pathwaysupports2012Source 1needs review

In PA-Rac1, detachment of the peripheral alpha-helix induces release of the AsLOV2 inhibitor from the switchII activation site of the GTPase, enabling signal activation through effector-protein binding.

In the case of the PA-Rac1 system we find that this latter process induces the release of the AsLOV2-inhibitor from the switchII-activation site of the GTPase, enabling signal activation through effector-protein binding
Claim 81mechanistic pathwaysupports2012Source 1needs review

In PA-Rac1, detachment of the peripheral alpha-helix induces release of the AsLOV2 inhibitor from the switchII activation site of the GTPase, enabling signal activation through effector-protein binding.

In the case of the PA-Rac1 system we find that this latter process induces the release of the AsLOV2-inhibitor from the switchII-activation site of the GTPase, enabling signal activation through effector-protein binding
Claim 82mechanistic pathwaysupports2012Source 1needs review

In PA-Rac1, detachment of the peripheral alpha-helix induces release of the AsLOV2 inhibitor from the switchII activation site of the GTPase, enabling signal activation through effector-protein binding.

In the case of the PA-Rac1 system we find that this latter process induces the release of the AsLOV2-inhibitor from the switchII-activation site of the GTPase, enabling signal activation through effector-protein binding
Claim 83mechanistic pathwaysupports2012Source 1needs review

In PA-Rac1, detachment of the peripheral alpha-helix induces release of the AsLOV2 inhibitor from the switchII activation site of the GTPase, enabling signal activation through effector-protein binding.

In the case of the PA-Rac1 system we find that this latter process induces the release of the AsLOV2-inhibitor from the switchII-activation site of the GTPase, enabling signal activation through effector-protein binding
Claim 84mechanistic pathwaysupports2012Source 1needs review

In PA-Rac1, detachment of the peripheral alpha-helix induces release of the AsLOV2 inhibitor from the switchII activation site of the GTPase, enabling signal activation through effector-protein binding.

In the case of the PA-Rac1 system we find that this latter process induces the release of the AsLOV2-inhibitor from the switchII-activation site of the GTPase, enabling signal activation through effector-protein binding
Claim 85mechanistic pathwaysupports2012Source 1needs review

In PA-Rac1, detachment of the peripheral alpha-helix induces release of the AsLOV2 inhibitor from the switchII activation site of the GTPase, enabling signal activation through effector-protein binding.

In the case of the PA-Rac1 system we find that this latter process induces the release of the AsLOV2-inhibitor from the switchII-activation site of the GTPase, enabling signal activation through effector-protein binding
Claim 86mechanistic pathwaysupports2012Source 1needs review

In PA-Rac1, detachment of the peripheral alpha-helix induces release of the AsLOV2 inhibitor from the switchII activation site of the GTPase, enabling signal activation through effector-protein binding.

In the case of the PA-Rac1 system we find that this latter process induces the release of the AsLOV2-inhibitor from the switchII-activation site of the GTPase, enabling signal activation through effector-protein binding
Claim 87mechanistic pathwaysupports2012Source 1needs review

In PA-Rac1, detachment of the peripheral alpha-helix induces release of the AsLOV2 inhibitor from the switchII activation site of the GTPase, enabling signal activation through effector-protein binding.

In the case of the PA-Rac1 system we find that this latter process induces the release of the AsLOV2-inhibitor from the switchII-activation site of the GTPase, enabling signal activation through effector-protein binding
Claim 88mechanistic pathwaysupports2012Source 1needs review

In PA-Rac1, detachment of the peripheral alpha-helix induces release of the AsLOV2 inhibitor from the switchII activation site of the GTPase, enabling signal activation through effector-protein binding.

In the case of the PA-Rac1 system we find that this latter process induces the release of the AsLOV2-inhibitor from the switchII-activation site of the GTPase, enabling signal activation through effector-protein binding
Claim 89mechanistic pathwaysupports2012Source 1needs review

The signaling pathway of AsLOV2-Jα begins with residual rearrangement and subsequent hydrogen-bond formation of amino acids near the flavin-mononucleotide chromophore, causing coupling between beta-strands and subsequent detachment of a peripheral alpha-helix from the AsLOV2 domain.

their signaling pathways begin with a residual re-arrangement and subsequent H-bond formation of amino acids near to the flavin-mononucleotide chromophore, causing a coupling between β-strands and subsequent detachment of a peripheral α-helix from the AsLOV2-domain
Claim 90mechanistic pathwaysupports2012Source 1needs review

The signaling pathway of AsLOV2-Jα begins with residual rearrangement and subsequent hydrogen-bond formation of amino acids near the flavin-mononucleotide chromophore, causing coupling between beta-strands and subsequent detachment of a peripheral alpha-helix from the AsLOV2 domain.

their signaling pathways begin with a residual re-arrangement and subsequent H-bond formation of amino acids near to the flavin-mononucleotide chromophore, causing a coupling between β-strands and subsequent detachment of a peripheral α-helix from the AsLOV2-domain
Claim 91mechanistic pathwaysupports2012Source 1needs review

The signaling pathway of AsLOV2-Jα begins with residual rearrangement and subsequent hydrogen-bond formation of amino acids near the flavin-mononucleotide chromophore, causing coupling between beta-strands and subsequent detachment of a peripheral alpha-helix from the AsLOV2 domain.

their signaling pathways begin with a residual re-arrangement and subsequent H-bond formation of amino acids near to the flavin-mononucleotide chromophore, causing a coupling between β-strands and subsequent detachment of a peripheral α-helix from the AsLOV2-domain
Claim 92mechanistic pathwaysupports2012Source 1needs review

The signaling pathway of AsLOV2-Jα begins with residual rearrangement and subsequent hydrogen-bond formation of amino acids near the flavin-mononucleotide chromophore, causing coupling between beta-strands and subsequent detachment of a peripheral alpha-helix from the AsLOV2 domain.

their signaling pathways begin with a residual re-arrangement and subsequent H-bond formation of amino acids near to the flavin-mononucleotide chromophore, causing a coupling between β-strands and subsequent detachment of a peripheral α-helix from the AsLOV2-domain
Claim 93mechanistic pathwaysupports2012Source 1needs review

The signaling pathway of AsLOV2-Jα begins with residual rearrangement and subsequent hydrogen-bond formation of amino acids near the flavin-mononucleotide chromophore, causing coupling between beta-strands and subsequent detachment of a peripheral alpha-helix from the AsLOV2 domain.

their signaling pathways begin with a residual re-arrangement and subsequent H-bond formation of amino acids near to the flavin-mononucleotide chromophore, causing a coupling between β-strands and subsequent detachment of a peripheral α-helix from the AsLOV2-domain
Claim 94mechanistic pathwaysupports2012Source 1needs review

The signaling pathway of AsLOV2-Jα begins with residual rearrangement and subsequent hydrogen-bond formation of amino acids near the flavin-mononucleotide chromophore, causing coupling between beta-strands and subsequent detachment of a peripheral alpha-helix from the AsLOV2 domain.

their signaling pathways begin with a residual re-arrangement and subsequent H-bond formation of amino acids near to the flavin-mononucleotide chromophore, causing a coupling between β-strands and subsequent detachment of a peripheral α-helix from the AsLOV2-domain
Claim 95mechanistic pathwaysupports2012Source 1needs review

The signaling pathway of AsLOV2-Jα begins with residual rearrangement and subsequent hydrogen-bond formation of amino acids near the flavin-mononucleotide chromophore, causing coupling between beta-strands and subsequent detachment of a peripheral alpha-helix from the AsLOV2 domain.

their signaling pathways begin with a residual re-arrangement and subsequent H-bond formation of amino acids near to the flavin-mononucleotide chromophore, causing a coupling between β-strands and subsequent detachment of a peripheral α-helix from the AsLOV2-domain
Claim 96mechanistic pathwaysupports2012Source 1needs review

The signaling pathway of AsLOV2-Jα begins with residual rearrangement and subsequent hydrogen-bond formation of amino acids near the flavin-mononucleotide chromophore, causing coupling between beta-strands and subsequent detachment of a peripheral alpha-helix from the AsLOV2 domain.

their signaling pathways begin with a residual re-arrangement and subsequent H-bond formation of amino acids near to the flavin-mononucleotide chromophore, causing a coupling between β-strands and subsequent detachment of a peripheral α-helix from the AsLOV2-domain
Claim 97mechanistic pathwaysupports2012Source 1needs review

The signaling pathway of AsLOV2-Jα begins with residual rearrangement and subsequent hydrogen-bond formation of amino acids near the flavin-mononucleotide chromophore, causing coupling between beta-strands and subsequent detachment of a peripheral alpha-helix from the AsLOV2 domain.

their signaling pathways begin with a residual re-arrangement and subsequent H-bond formation of amino acids near to the flavin-mononucleotide chromophore, causing a coupling between β-strands and subsequent detachment of a peripheral α-helix from the AsLOV2-domain
Claim 98mechanistic pathwaysupports2012Source 1needs review

The signaling pathway of AsLOV2-Jα begins with residual rearrangement and subsequent hydrogen-bond formation of amino acids near the flavin-mononucleotide chromophore, causing coupling between beta-strands and subsequent detachment of a peripheral alpha-helix from the AsLOV2 domain.

their signaling pathways begin with a residual re-arrangement and subsequent H-bond formation of amino acids near to the flavin-mononucleotide chromophore, causing a coupling between β-strands and subsequent detachment of a peripheral α-helix from the AsLOV2-domain
Claim 99mechanistic pathwaysupports2012Source 1needs review

The signaling pathway of AsLOV2-Jα begins with residual rearrangement and subsequent hydrogen-bond formation of amino acids near the flavin-mononucleotide chromophore, causing coupling between beta-strands and subsequent detachment of a peripheral alpha-helix from the AsLOV2 domain.

their signaling pathways begin with a residual re-arrangement and subsequent H-bond formation of amino acids near to the flavin-mononucleotide chromophore, causing a coupling between β-strands and subsequent detachment of a peripheral α-helix from the AsLOV2-domain
Claim 100mechanistic pathwaysupports2012Source 1needs review

The signaling pathway of AsLOV2-Jα begins with residual rearrangement and subsequent hydrogen-bond formation of amino acids near the flavin-mononucleotide chromophore, causing coupling between beta-strands and subsequent detachment of a peripheral alpha-helix from the AsLOV2 domain.

their signaling pathways begin with a residual re-arrangement and subsequent H-bond formation of amino acids near to the flavin-mononucleotide chromophore, causing a coupling between β-strands and subsequent detachment of a peripheral α-helix from the AsLOV2-domain
Claim 101mechanistic pathwaysupports2012Source 1needs review

The signaling pathway of AsLOV2-Jα begins with residual rearrangement and subsequent hydrogen-bond formation of amino acids near the flavin-mononucleotide chromophore, causing coupling between beta-strands and subsequent detachment of a peripheral alpha-helix from the AsLOV2 domain.

their signaling pathways begin with a residual re-arrangement and subsequent H-bond formation of amino acids near to the flavin-mononucleotide chromophore, causing a coupling between β-strands and subsequent detachment of a peripheral α-helix from the AsLOV2-domain
Claim 102mechanistic pathwaysupports2012Source 1needs review

The signaling pathway of AsLOV2-Jα begins with residual rearrangement and subsequent hydrogen-bond formation of amino acids near the flavin-mononucleotide chromophore, causing coupling between beta-strands and subsequent detachment of a peripheral alpha-helix from the AsLOV2 domain.

their signaling pathways begin with a residual re-arrangement and subsequent H-bond formation of amino acids near to the flavin-mononucleotide chromophore, causing a coupling between β-strands and subsequent detachment of a peripheral α-helix from the AsLOV2-domain
Claim 103mechanistic pathwaysupports2012Source 1needs review

The signaling pathway of AsLOV2-Jα begins with residual rearrangement and subsequent hydrogen-bond formation of amino acids near the flavin-mononucleotide chromophore, causing coupling between beta-strands and subsequent detachment of a peripheral alpha-helix from the AsLOV2 domain.

their signaling pathways begin with a residual re-arrangement and subsequent H-bond formation of amino acids near to the flavin-mononucleotide chromophore, causing a coupling between β-strands and subsequent detachment of a peripheral α-helix from the AsLOV2-domain
Claim 104mechanistic pathwaysupports2012Source 1needs review

The signaling pathway of AsLOV2-Jα begins with residual rearrangement and subsequent hydrogen-bond formation of amino acids near the flavin-mononucleotide chromophore, causing coupling between beta-strands and subsequent detachment of a peripheral alpha-helix from the AsLOV2 domain.

their signaling pathways begin with a residual re-arrangement and subsequent H-bond formation of amino acids near to the flavin-mononucleotide chromophore, causing a coupling between β-strands and subsequent detachment of a peripheral α-helix from the AsLOV2-domain
Claim 105mechanistic pathwaysupports2012Source 1needs review

The signaling pathway of AsLOV2-Jα begins with residual rearrangement and subsequent hydrogen-bond formation of amino acids near the flavin-mononucleotide chromophore, causing coupling between beta-strands and subsequent detachment of a peripheral alpha-helix from the AsLOV2 domain.

their signaling pathways begin with a residual re-arrangement and subsequent H-bond formation of amino acids near to the flavin-mononucleotide chromophore, causing a coupling between β-strands and subsequent detachment of a peripheral α-helix from the AsLOV2-domain
Claim 106method capabilitysupports2012Source 1needs review

The multiscale-modeling method is suitable for investigating the signaling behavior of AsLOV2-Jα and PA-Rac1.

we present in this paper a novel multiscale-modeling method, based on a combination of the kinetic Monte-Carlo- and MD-technique, and demonstrate its suitability for investigating the signaling behavior of the photoswitch light-oxygen-voltage-2-Jα domain from Avena Sativa (AsLOV2-Jα) and an AsLOV2-Jα-regulated photoactivable Rac1-GTPase (PA-Rac1)
Claim 107method capabilitysupports2012Source 1needs review

The multiscale-modeling method is suitable for investigating the signaling behavior of AsLOV2-Jα and PA-Rac1.

we present in this paper a novel multiscale-modeling method, based on a combination of the kinetic Monte-Carlo- and MD-technique, and demonstrate its suitability for investigating the signaling behavior of the photoswitch light-oxygen-voltage-2-Jα domain from Avena Sativa (AsLOV2-Jα) and an AsLOV2-Jα-regulated photoactivable Rac1-GTPase (PA-Rac1)
Claim 108method capabilitysupports2012Source 1needs review

The multiscale-modeling method is suitable for investigating the signaling behavior of AsLOV2-Jα and PA-Rac1.

we present in this paper a novel multiscale-modeling method, based on a combination of the kinetic Monte-Carlo- and MD-technique, and demonstrate its suitability for investigating the signaling behavior of the photoswitch light-oxygen-voltage-2-Jα domain from Avena Sativa (AsLOV2-Jα) and an AsLOV2-Jα-regulated photoactivable Rac1-GTPase (PA-Rac1)
Claim 109method capabilitysupports2012Source 1needs review

The multiscale-modeling method is suitable for investigating the signaling behavior of AsLOV2-Jα and PA-Rac1.

we present in this paper a novel multiscale-modeling method, based on a combination of the kinetic Monte-Carlo- and MD-technique, and demonstrate its suitability for investigating the signaling behavior of the photoswitch light-oxygen-voltage-2-Jα domain from Avena Sativa (AsLOV2-Jα) and an AsLOV2-Jα-regulated photoactivable Rac1-GTPase (PA-Rac1)
Claim 110method capabilitysupports2012Source 1needs review

The multiscale-modeling method is suitable for investigating the signaling behavior of AsLOV2-Jα and PA-Rac1.

we present in this paper a novel multiscale-modeling method, based on a combination of the kinetic Monte-Carlo- and MD-technique, and demonstrate its suitability for investigating the signaling behavior of the photoswitch light-oxygen-voltage-2-Jα domain from Avena Sativa (AsLOV2-Jα) and an AsLOV2-Jα-regulated photoactivable Rac1-GTPase (PA-Rac1)
Claim 111method capabilitysupports2012Source 1needs review

The multiscale-modeling method is suitable for investigating the signaling behavior of AsLOV2-Jα and PA-Rac1.

we present in this paper a novel multiscale-modeling method, based on a combination of the kinetic Monte-Carlo- and MD-technique, and demonstrate its suitability for investigating the signaling behavior of the photoswitch light-oxygen-voltage-2-Jα domain from Avena Sativa (AsLOV2-Jα) and an AsLOV2-Jα-regulated photoactivable Rac1-GTPase (PA-Rac1)
Claim 112method capabilitysupports2012Source 1needs review

The multiscale-modeling method is suitable for investigating the signaling behavior of AsLOV2-Jα and PA-Rac1.

we present in this paper a novel multiscale-modeling method, based on a combination of the kinetic Monte-Carlo- and MD-technique, and demonstrate its suitability for investigating the signaling behavior of the photoswitch light-oxygen-voltage-2-Jα domain from Avena Sativa (AsLOV2-Jα) and an AsLOV2-Jα-regulated photoactivable Rac1-GTPase (PA-Rac1)
Claim 113method capabilitysupports2012Source 1needs review

The multiscale-modeling method is suitable for investigating the signaling behavior of AsLOV2-Jα and PA-Rac1.

we present in this paper a novel multiscale-modeling method, based on a combination of the kinetic Monte-Carlo- and MD-technique, and demonstrate its suitability for investigating the signaling behavior of the photoswitch light-oxygen-voltage-2-Jα domain from Avena Sativa (AsLOV2-Jα) and an AsLOV2-Jα-regulated photoactivable Rac1-GTPase (PA-Rac1)
Claim 114method capabilitysupports2012Source 1needs review

The multiscale-modeling method is suitable for investigating the signaling behavior of AsLOV2-Jα and PA-Rac1.

we present in this paper a novel multiscale-modeling method, based on a combination of the kinetic Monte-Carlo- and MD-technique, and demonstrate its suitability for investigating the signaling behavior of the photoswitch light-oxygen-voltage-2-Jα domain from Avena Sativa (AsLOV2-Jα) and an AsLOV2-Jα-regulated photoactivable Rac1-GTPase (PA-Rac1)
Claim 115method capabilitysupports2012Source 1needs review

The multiscale-modeling method is suitable for investigating the signaling behavior of AsLOV2-Jα and PA-Rac1.

we present in this paper a novel multiscale-modeling method, based on a combination of the kinetic Monte-Carlo- and MD-technique, and demonstrate its suitability for investigating the signaling behavior of the photoswitch light-oxygen-voltage-2-Jα domain from Avena Sativa (AsLOV2-Jα) and an AsLOV2-Jα-regulated photoactivable Rac1-GTPase (PA-Rac1)
Claim 116method capabilitysupports2012Source 1needs review

The multiscale-modeling method is suitable for investigating the signaling behavior of AsLOV2-Jα and PA-Rac1.

we present in this paper a novel multiscale-modeling method, based on a combination of the kinetic Monte-Carlo- and MD-technique, and demonstrate its suitability for investigating the signaling behavior of the photoswitch light-oxygen-voltage-2-Jα domain from Avena Sativa (AsLOV2-Jα) and an AsLOV2-Jα-regulated photoactivable Rac1-GTPase (PA-Rac1)
Claim 117method capabilitysupports2012Source 1needs review

The multiscale-modeling method is suitable for investigating the signaling behavior of AsLOV2-Jα and PA-Rac1.

we present in this paper a novel multiscale-modeling method, based on a combination of the kinetic Monte-Carlo- and MD-technique, and demonstrate its suitability for investigating the signaling behavior of the photoswitch light-oxygen-voltage-2-Jα domain from Avena Sativa (AsLOV2-Jα) and an AsLOV2-Jα-regulated photoactivable Rac1-GTPase (PA-Rac1)
Claim 118method capabilitysupports2012Source 1needs review

The multiscale-modeling method is suitable for investigating the signaling behavior of AsLOV2-Jα and PA-Rac1.

we present in this paper a novel multiscale-modeling method, based on a combination of the kinetic Monte-Carlo- and MD-technique, and demonstrate its suitability for investigating the signaling behavior of the photoswitch light-oxygen-voltage-2-Jα domain from Avena Sativa (AsLOV2-Jα) and an AsLOV2-Jα-regulated photoactivable Rac1-GTPase (PA-Rac1)
Claim 119method capabilitysupports2012Source 1needs review

The multiscale-modeling method is suitable for investigating the signaling behavior of AsLOV2-Jα and PA-Rac1.

we present in this paper a novel multiscale-modeling method, based on a combination of the kinetic Monte-Carlo- and MD-technique, and demonstrate its suitability for investigating the signaling behavior of the photoswitch light-oxygen-voltage-2-Jα domain from Avena Sativa (AsLOV2-Jα) and an AsLOV2-Jα-regulated photoactivable Rac1-GTPase (PA-Rac1)
Claim 120method capabilitysupports2012Source 1needs review

The multiscale-modeling method is suitable for investigating the signaling behavior of AsLOV2-Jα and PA-Rac1.

we present in this paper a novel multiscale-modeling method, based on a combination of the kinetic Monte-Carlo- and MD-technique, and demonstrate its suitability for investigating the signaling behavior of the photoswitch light-oxygen-voltage-2-Jα domain from Avena Sativa (AsLOV2-Jα) and an AsLOV2-Jα-regulated photoactivable Rac1-GTPase (PA-Rac1)
Claim 121method capabilitysupports2012Source 1needs review

The multiscale-modeling method is suitable for investigating the signaling behavior of AsLOV2-Jα and PA-Rac1.

we present in this paper a novel multiscale-modeling method, based on a combination of the kinetic Monte-Carlo- and MD-technique, and demonstrate its suitability for investigating the signaling behavior of the photoswitch light-oxygen-voltage-2-Jα domain from Avena Sativa (AsLOV2-Jα) and an AsLOV2-Jα-regulated photoactivable Rac1-GTPase (PA-Rac1)
Claim 122method capabilitysupports2012Source 1needs review

The multiscale-modeling method is suitable for investigating the signaling behavior of AsLOV2-Jα and PA-Rac1.

we present in this paper a novel multiscale-modeling method, based on a combination of the kinetic Monte-Carlo- and MD-technique, and demonstrate its suitability for investigating the signaling behavior of the photoswitch light-oxygen-voltage-2-Jα domain from Avena Sativa (AsLOV2-Jα) and an AsLOV2-Jα-regulated photoactivable Rac1-GTPase (PA-Rac1)

Approval Evidence

2 sources6 linked approval claimsfirst-pass slug aslov2-j
the photoswitch light-oxygen-voltage-2-Jα domain from Avena Sativa (AsLOV2-Jα)

Source:

the LOV-2-Jα photoswitch of phototropin1 from Avena sativa (AsLOV2-Jα)

Source:

compositionsupports

LOV-TAP is an artificial protein construct in which AsLOV2-Jα is ligated to TrpR.

the artificial protein construct light-oxygen-voltage (LOV)-tryptophan-activated protein (TAP), in which the LOV-2-Jα photoswitch of phototropin1 from Avena sativa (AsLOV2-Jα) has been ligated to the tryptophan-repressor (TrpR) protein from Escherichia coli

Source:

mechanismsupports

After photoexcitation, Cys450-FMN adduct formation in the AsLOV2-Jα binding pocket induces cleavage of the peripheral Jα-helix from the LOV core.

Cys450-FMN-adduct formation in the AsLOV2-Jα-binding pocket after photoexcitation induces the cleavage of the peripheral Jα-helix from the LOV core

Source:

mechanismsupports

In the dark state, the AsLOV2-Jα photoswitch exerts a repulsive electrostatic force on the DNA surface, leading to distortion of the hairpin region and disruption of LOV-TAP from DNA.

in the dark state the AsLOV2-Jα photoswitch remains inactive and exerts a repulsive electrostatic force on the DNA surface. This leads to a distortion of the hairpin region, which finally relieves its tension by causing the disruption of LOV-TAP from the DNA.

Source:

mechanismsupports

Light activation changes the polarity of the LOV photoswitch and promotes electrostatic attraction of LOV-TAP onto the DNA surface.

causing a change of its polarity and electrostatic attraction of the photoswitch onto the DNA surface

Source:

mechanistic pathwaysupports

The signaling pathway of AsLOV2-Jα begins with residual rearrangement and subsequent hydrogen-bond formation of amino acids near the flavin-mononucleotide chromophore, causing coupling between beta-strands and subsequent detachment of a peripheral alpha-helix from the AsLOV2 domain.

their signaling pathways begin with a residual re-arrangement and subsequent H-bond formation of amino acids near to the flavin-mononucleotide chromophore, causing a coupling between β-strands and subsequent detachment of a peripheral α-helix from the AsLOV2-domain

Source:

method capabilitysupports

The multiscale-modeling method is suitable for investigating the signaling behavior of AsLOV2-Jα and PA-Rac1.

we present in this paper a novel multiscale-modeling method, based on a combination of the kinetic Monte-Carlo- and MD-technique, and demonstrate its suitability for investigating the signaling behavior of the photoswitch light-oxygen-voltage-2-Jα domain from Avena Sativa (AsLOV2-Jα) and an AsLOV2-Jα-regulated photoactivable Rac1-GTPase (PA-Rac1)

Source:

Comparisons

Source-backed strengths

The available evidence supports a mechanistically explicit model in which photoexcitation drives Cys450-FMN adduct formation, Jα-helix cleavage/undocking from the LOV core, and subsequent electrostatic attraction to DNA. The study also identifies unfolding and flexibilization of a hairpin-like helix-loop-helix region as a structural basis for condensation of LOV-TAP onto the DNA surface.

AsLOV2-Jα and light-harvesting complex II address a similar problem space because they share signaling.

Shared frame: same top-level item type; shared target processes: signaling; shared mechanisms: photocleavage; same primary input modality: light

Relative tradeoffs: appears more independently replicated.

AsLOV2-Jα and photoactivatable inhibitor for cyclic-AMP dependent kinase (PKA) address a similar problem space because they share signaling.

Shared frame: same top-level item type; shared target processes: signaling; shared mechanisms: allosteric switching; same primary input modality: light

Strengths here: appears more independently replicated; looks easier to implement in practice.

Compared with uniRapR module

AsLOV2-Jα and uniRapR module address a similar problem space because they share signaling.

Shared frame: same top-level item type; shared target processes: signaling; shared mechanisms: allosteric switching; same primary input modality: light

Strengths here: appears more independently replicated; looks easier to implement in practice.

Ranked Citations

  1. 1.
    StructuralSource 1The Journal of Chemical Physics2012Claim 88Claim 88Claim 87

    Extracted from this source document.

  2. 2.
    StructuralSource 2Proteins Structure Function and Bioinformatics2012Claim 17Claim 12Claim 3

    Extracted from this source document.