Toolkit/CC-ABE
CC-ABE
Also known as: coiled-coil heterodimer-mediated adenine base editor
Taxonomy: Mechanism Branch / Architecture. Workflows sit above the mechanism and technique branches rather than replacing them.
Summary
resulting in various coiled-coil heterodimers-mediated base editors (CC-BEs), including ... adenine base editor (CC-ABE)... Using CC-ABE, we validate in vivo editing efficiency and successfully achieve A-to-G conversion in the Pcsk9 and Dmd genes via dual-AAV vectors in mice.
Usefulness & Problems
No literature-backed usefulness or problem-fit explainer has been materialized for this record yet.
Published Workflows
Objective: Engineer split base editors that overcome AAV packaging limits while preserving robust base substitution activity, and validate in vivo delivery.
Why it works: The workflow is based on splitting oversized base editors and functionally reconnecting deaminase and Cas9 nickase modules through coiled-coil heterodimers, which the abstract says preserves or improves editing efficiency while enabling dual-AAV delivery.
Stages
- 1.split base editor design(library_design)
This stage exists to address the size of base editors that exceeds AAV packaging capacity.
Selection: Design split base editor systems that recruit deaminases to Cas9 nickase via coiled-coil heterodimers.
- 2.cell-based activity evaluation across editor variants and contexts(functional_characterization)
This stage checks whether the split architecture compromises editing performance before in vivo use.
Selection: Assess whether CC-BEs maintain or improve editing efficiency relative to original unsplit base editors across various cell types and editing scopes.
- 3.in vivo dual-AAV validation in mice(in_vivo_validation)
This stage confirms that the split-editor strategy solves the delivery-size problem in an in vivo setting.
Selection: Validate in vivo editing efficiency of CC-ABE by testing A-to-G conversion at Pcsk9 and Dmd in mice via dual-AAV vectors.
Steps
- 1.Design split base editors by linking deaminase and Cas9 nickase modules through coiled-coil heterodimersengineered split editor systems
Create base editor architectures that can bypass AAV packaging limits.
The size of conventional base editors is presented as the primary barrier to in vivo AAV application, so the workflow begins with a split-design solution.
- 2.Compare editing efficiency of CC-BEs against original unsplit base editors across cell types and editing scopessplit editor variants under evaluation
Determine whether splitting preserves or improves editing activity before in vivo testing.
The abstract indicates that activity must be maintained despite splitting, making this a necessary gate before animal validation.
- 3.Validate CC-ABE in vivo by dual-AAV delivery and test A-to-G conversion at Pcsk9 and Dmd in micesplit editor delivered for in vivo validation
Confirm that the split-editor strategy enables in vivo base editing under AAV packaging constraints.
In vivo validation follows cell-based activity evidence because animal testing is used to confirm practical delivery and function after the lower-complexity activity checks.
Taxonomy & Function
Primary hierarchy
Mechanism Branch
Architecture: A composed arrangement of multiple parts that instantiates one or more mechanisms.
Mechanisms
HeterodimerizationTechniques
Computational DesignTarget processes
editingValidation
Observations
Inferred from claim c4 during normalization. CC-ABE enabled in vivo A-to-G conversion in Pcsk9 and Dmd in mice using dual-AAV vectors. Derived from claim c4.
Source:
Supporting Sources
Ranked Claims
The paper designs a split base editor system that recruits deaminases to Cas9 nickase via coiled-coil heterodimers, producing CC-BEs including CC-CBE and CC-ABE.
CC-ABE enabled in vivo A-to-G conversion in Pcsk9 and Dmd in mice using dual-AAV vectors.
CC-BEs maintain and can improve editing efficiency relative to the original unsplit base editors across various cell types and editing scopes.
CC-CBE achieved maximum editing-efficiency enhancements of 9.6-fold in human immortalized cells and 12.4-fold in primary somatic cells.
The coiled-coil split base editor strategy addresses the large size of base editors for in vivo AAV delivery without compromising editing efficiency for base substitutions.
Approval Evidence
resulting in various coiled-coil heterodimers-mediated base editors (CC-BEs), including ... adenine base editor (CC-ABE)... Using CC-ABE, we validate in vivo editing efficiency and successfully achieve A-to-G conversion in the Pcsk9 and Dmd genes via dual-AAV vectors in mice.
Source:
The paper designs a split base editor system that recruits deaminases to Cas9 nickase via coiled-coil heterodimers, producing CC-BEs including CC-CBE and CC-ABE.
Source:
CC-ABE enabled in vivo A-to-G conversion in Pcsk9 and Dmd in mice using dual-AAV vectors.
Source:
Comparisons
No literature-backed comparison notes have been materialized for this record yet.
Ranked Citations
- 1.