Toolkit/Correlative light-electron microscopy

Correlative light-electron microscopy

Assay Method·Research·Since 2022

Also known as: CLEM

Taxonomy: Technique Branch / Method. Workflows sit above the mechanism and technique branches rather than replacing them.

Summary

It is anticipated that the combination of chemical probes, highly selective inhibitors, and sensors with advanced (super resolution) imaging modalities, such as PharmacoSTORM and correlative light-electron microscopy, will uncover the fundamental basis of lipid signaling at nanoscale resolution in the brain.

Usefulness & Problems

Why this is useful

Correlative light-electron microscopy is proposed as an imaging modality to combine with endocannabinoid probes and sensors. In the abstract it is positioned as a future-enabling visualization approach for nanoscale brain lipid signaling.; advanced imaging in combination with chemical probes and sensors; nanoscale-resolution study of lipid signaling in the brain

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Correlative light-electron microscopy is proposed as an imaging modality to combine with endocannabinoid probes and sensors. In the abstract it is positioned as a future-enabling visualization approach for nanoscale brain lipid signaling.

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advanced imaging in combination with chemical probes and sensors

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nanoscale-resolution study of lipid signaling in the brain

Problem solved

It is intended to improve structural and spatial resolution for studying lipid signaling organization.; offers a prospective imaging route toward nanoscale visualization of lipid signaling

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It is intended to improve structural and spatial resolution for studying lipid signaling organization.

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offers a prospective imaging route toward nanoscale visualization of lipid signaling

Problem links

Inadequate Imaging of Material Structures

Gap mapView gap

Correlative light-electron microscopy is at least mechanistically relevant to nanoscale structural imaging, and electron microscopy can resolve internal structures beyond conventional light microscopy. It could plausibly help as a benchmark or complementary workflow for difficult-to-image structures.

offers a prospective imaging route toward nanoscale visualization of lipid signaling

Literature

It is intended to improve structural and spatial resolution for studying lipid signaling organization.

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It is intended to improve structural and spatial resolution for studying lipid signaling organization.

Published Workflows

Objective: Interrogate endocannabinoid signaling in the brain by combining enzyme inhibition, enzyme-activity visualization, controlled lipid perturbation, and real-time sensing.

Why it works: The review presents complementary tool classes that each address a different observability or control gap: ABPP and chemical proteomics support selective inhibitor discovery and enzyme-activity mapping, while photoresponsive lipids and genetically encoded sensors address spatiotemporal control and real-time monitoring that activity-based probes alone cannot provide.

biosynthetic enzyme inhibitionmetabolic enzyme inhibitionenzyme activity visualizationcontrolled lipid releaselipid transport and uptake interrogationreal-time endocannabinoid sensingactivity-based protein profilingchemical proteomicsphotoresponsive bio-orthogonal lipid probesgenetically encoded sensorsadvanced imaging

Stages

  1. 1.
    Enzyme-focused probe and inhibitor discovery(broad_screen)

    This stage identifies selective chemical matter against key endocannabinoid enzymes and establishes perturbation tools for downstream biology.

    Selection: Use activity-based probes to guide discovery of highly selective and in vivo active inhibitors of biosynthetic and metabolic endocannabinoid enzymes.

  2. 2.
    Chemical proteomic guidance during drug discovery and development(functional_characterization)

    This stage refines and supports translational inhibitor development after initial probe-enabled discovery.

    Selection: Apply ABPP and chemical proteomics to guide development of MAGL- and FAAH-targeting compounds such as ABX-1431 and PF-04457845.

  3. 3.
    Spatial visualization of enzyme activity in brain slices(secondary_characterization)

    This stage adds spatial and cell type-specific context to enzyme activity beyond inhibitor discovery alone.

    Selection: Use activity-based probes to visualize lipid-metabolizing enzyme activity with high spatial resolution in brain slices.

  4. 4.
    Photoresponsive lipid probing of transport, release, and interaction partners(functional_characterization)

    The review explicitly states this stage is needed because activity-based probes cannot capture transport, release, and uptake of signaling lipids in a spatiotemporally controlled manner.

    Selection: Deploy bio-orthogonal lipids with photoreactive, photoswitchable, or photocaged groups to study transport, release, uptake, interaction partners, and rapid functional responses.

  5. 5.
    Real-time endocannabinoid sensing across preparations(confirmatory_validation)

    This stage provides direct dynamic readout of endocannabinoid release across increasingly physiological systems.

    Selection: Use genetically encoded sensors to monitor real-time endocannabinoid release with high spatiotemporal resolution in cultured neurons, acute brain slices, and in vivo mouse models.

Steps

  1. 1.
    Use activity-based probes to discover selective and in vivo active enzyme inhibitors

    Generate selective perturbation tools against biosynthetic and metabolic endocannabinoid enzymes.

    The review presents enzyme inhibition as an initial route to study endocannabinoid signaling and as the basis for later disease-model and translational work.

  2. 2.
    Apply ABPP and chemical proteomics to guide development of translational compounds

    Support drug discovery and development decisions for MAGL- and FAAH-targeting compounds.

    After initial inhibitor discovery, the review places chemical proteomic guidance as essential for advancing compounds such as ABX-1431 and PF-04457845.

  3. 3.
    Switch to photoresponsive bio-orthogonal lipids when transport and release questions cannot be answered by activity-based probes

    Address transport, release, uptake, and interaction-partner questions with spatiotemporal control.

    The abstract explicitly states that activity-based probes cannot capture these lipid processes in a spatiotemporally controlled manner, motivating a change in tool class.

  4. 4.
    Use genetically encoded sensors for real-time monitoring across cultured neurons, brain slices, and in vivo mouse models

    Directly monitor endocannabinoid release dynamics with high spatiotemporal resolution.

    The review presents sensors as the tool class that enables real-time monitoring after earlier perturbation and visualization approaches establish enzyme and lipid-control context.

Taxonomy & Function

Primary hierarchy

Technique Branch

Method: A concrete measurement method used to characterize an engineered system.

Target processes

signaling

Input: Light

Implementation Constraints

cofactor dependency: cofactor requirement unknownencoding mode: genetically encodedimplementation constraint: context specific validationimplementation constraint: spectral hardware requirementoperating role: sensor

The review suggests combining it with chemical probes, inhibitors, and sensors. No protocol details are given in the abstract.; requires combination with chemical probes, selective inhibitors, or sensors

The abstract does not indicate that it directly controls lipid release or measures enzyme activity by itself.; mentioned prospectively rather than as a demonstrated endocannabinoid-metabolism workflow in the abstract

Validation

Cell-freeBacteriaMammalianMouseHumanTherapeuticIndep. Replication

Supporting Sources

Ranked Claims

Claim 1future directionsupports2022Source 1needs review

Combining chemical probes, selective inhibitors, and sensors with advanced imaging modalities such as PharmacoSTORM and correlative light-electron microscopy is anticipated to reveal lipid signaling at nanoscale resolution in the brain.

Claim 2limitationsupports2022Source 1needs review

Activity-based probes cannot capture transport, release, and uptake of signaling lipids in a spatiotemporally controlled manner.

Claim 3method utilitysupports2022Source 1needs review

Activity-based probes were instrumental in discovering highly selective and in vivo active inhibitors of DAGL, NAPE-PLD, MAGL, and FAAH.

Claim 4method utilitysupports2022Source 1needs review

Activity-based protein profiling and chemical proteomics were essential to guide discovery and development of MAGL- and FAAH-targeting compounds including ABX-1431 and PF-04457845.

Claim 5method utilitysupports2022Source 1needs review

Genetically encoded sensors have been developed to monitor real-time endocannabinoid release with high spatiotemporal resolution in cultured neurons, acute brain slices, and in vivo mouse models.

Claim 6review summarysupports2022Source 1needs review

Chemical probes have enabled study of endocannabinoid signaling in the brain by inhibiting biosynthetic and metabolic enzymes, visualizing enzyme activity, and controlling endocannabinoid release and transport.

Approval Evidence

1 source1 linked approval claimfirst-pass slug correlative-light-electron-microscopy
It is anticipated that the combination of chemical probes, highly selective inhibitors, and sensors with advanced (super resolution) imaging modalities, such as PharmacoSTORM and correlative light-electron microscopy, will uncover the fundamental basis of lipid signaling at nanoscale resolution in the brain.

Source:

future directionsupports

Combining chemical probes, selective inhibitors, and sensors with advanced imaging modalities such as PharmacoSTORM and correlative light-electron microscopy is anticipated to reveal lipid signaling at nanoscale resolution in the brain.

Source:

Comparisons

Source-backed strengths

explicitly named as an advanced imaging modality for nanoscale-resolution studies

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explicitly named as an advanced imaging modality for nanoscale-resolution studies

Correlative light-electron microscopy and electrical stimulation address a similar problem space because they share signaling.

Shared frame: same top-level item type; shared target processes: signaling; same primary input modality: light

Correlative light-electron microscopy and Förster resonance energy transfer imaging address a similar problem space because they share signaling.

Shared frame: same top-level item type; shared target processes: signaling; same primary input modality: light

Compared with live imaging

Correlative light-electron microscopy and live imaging address a similar problem space because they share signaling.

Shared frame: same top-level item type; shared target processes: signaling; same primary input modality: light

Ranked Citations

  1. 1.
    StructuralSource 1Accounts of Chemical Research2022Claim 1Claim 2Claim 3

    Seeded from load plan for claim cl8. Extracted from this source document.