Toolkit/dynamic multiplexing

dynamic multiplexing

Computational Method·Research·Since 2021

Taxonomy: Technique Branch / Method. Workflows sit above the mechanism and technique branches rather than replacing them.

Summary

Dynamic multiplexing is a computational design principle for synthetic gene networks that encodes and decodes time-varying inputs into distinct gene expression states. In the cited 2021 study, it increased information transmission from signal to gene expression and enabled dynamic signal decoding using engineered regulators with different response kinetics.

Usefulness & Problems

Why this is useful

This approach is useful for extracting more regulatory information from a single dynamic input by mapping temporal features onto different transcriptional outputs. The cited work also applied it to precise multidimensional regulation of a heterologous metabolic pathway, indicating utility for biotechnological control tasks.

Source:

Finally, we use dynamic multiplexing for precise multidimensional regulation of a heterologous metabolic pathway.

Source:

show that this circuit can be employed to demultiplex dynamically encoded signals

Problem solved

It addresses the problem that static or single-channel regulation limits how much information can be transmitted from an input signal to gene expression state. The reported design principle uses temporal structure and kinetic differences among regulators to decode complex signals into differential expression programs.

Source:

Finally, we use dynamic multiplexing for precise multidimensional regulation of a heterologous metabolic pathway.

Taxonomy & Function

Primary hierarchy

Technique Branch

Method: A concrete computational method used to design, rank, or analyze an engineered system.

Target processes

recombination

Implementation Constraints

The reported implementation used synthetic gene networks and light-responsive transcriptional regulators with differing response kinetics to construct dynamic decoders such as a falling-edge pulse detector. The supplied evidence also mentions domain-level circuit integration with dCas9-based regulators, but practical construct details, host system, and delivery conditions are not described in the provided text.

The provided evidence is limited to a single 2021 study and does not report independent replication in the supplied material. Quantitative performance details, implementation generality across organisms, and direct evidence for recombination-related applications are not provided here.

Validation

Cell-freeBacteriaMammalianMouseHumanTherapeuticIndep. Replication

Supporting Sources

Ranked Claims

Claim 1application demosupports2021Source 1needs review

Dynamic multiplexing was used for precise multidimensional regulation of a heterologous metabolic pathway.

Finally, we use dynamic multiplexing for precise multidimensional regulation of a heterologous metabolic pathway.
Claim 2application demosupports2021Source 1needs review

Dynamic multiplexing was used for precise multidimensional regulation of a heterologous metabolic pathway.

Finally, we use dynamic multiplexing for precise multidimensional regulation of a heterologous metabolic pathway.
Claim 3application demosupports2021Source 1needs review

Dynamic multiplexing was used for precise multidimensional regulation of a heterologous metabolic pathway.

Finally, we use dynamic multiplexing for precise multidimensional regulation of a heterologous metabolic pathway.
Claim 4application demosupports2021Source 1needs review

Dynamic multiplexing was used for precise multidimensional regulation of a heterologous metabolic pathway.

Finally, we use dynamic multiplexing for precise multidimensional regulation of a heterologous metabolic pathway.
Claim 5application demosupports2021Source 1needs review

Dynamic multiplexing was used for precise multidimensional regulation of a heterologous metabolic pathway.

Finally, we use dynamic multiplexing for precise multidimensional regulation of a heterologous metabolic pathway.
Claim 6application demosupports2021Source 1needs review

Dynamic multiplexing was used for precise multidimensional regulation of a heterologous metabolic pathway.

Finally, we use dynamic multiplexing for precise multidimensional regulation of a heterologous metabolic pathway.
Claim 7application demosupports2021Source 1needs review

Dynamic multiplexing was used for precise multidimensional regulation of a heterologous metabolic pathway.

Finally, we use dynamic multiplexing for precise multidimensional regulation of a heterologous metabolic pathway.
Claim 8design principlesupports2021Source 1needs review

The reported systems elucidate design principles of dynamic information processing and provide synthetic systems capable of decoding complex signals for biotechnological applications.

Our results elucidate design principles of dynamic information processing and provide original synthetic systems capable of decoding complex signals for biotechnological applications.
Claim 9design principlesupports2021Source 1needs review

The reported systems elucidate design principles of dynamic information processing and provide synthetic systems capable of decoding complex signals for biotechnological applications.

Our results elucidate design principles of dynamic information processing and provide original synthetic systems capable of decoding complex signals for biotechnological applications.
Claim 10design principlesupports2021Source 1needs review

The reported systems elucidate design principles of dynamic information processing and provide synthetic systems capable of decoding complex signals for biotechnological applications.

Our results elucidate design principles of dynamic information processing and provide original synthetic systems capable of decoding complex signals for biotechnological applications.
Claim 11design principlesupports2021Source 1needs review

The reported systems elucidate design principles of dynamic information processing and provide synthetic systems capable of decoding complex signals for biotechnological applications.

Our results elucidate design principles of dynamic information processing and provide original synthetic systems capable of decoding complex signals for biotechnological applications.
Claim 12design principlesupports2021Source 1needs review

The reported systems elucidate design principles of dynamic information processing and provide synthetic systems capable of decoding complex signals for biotechnological applications.

Our results elucidate design principles of dynamic information processing and provide original synthetic systems capable of decoding complex signals for biotechnological applications.
Claim 13design principlesupports2021Source 1needs review

The reported systems elucidate design principles of dynamic information processing and provide synthetic systems capable of decoding complex signals for biotechnological applications.

Our results elucidate design principles of dynamic information processing and provide original synthetic systems capable of decoding complex signals for biotechnological applications.
Claim 14design principlesupports2021Source 1needs review

The reported systems elucidate design principles of dynamic information processing and provide synthetic systems capable of decoding complex signals for biotechnological applications.

Our results elucidate design principles of dynamic information processing and provide original synthetic systems capable of decoding complex signals for biotechnological applications.
Claim 15engineering resultsupports2021Source 1needs review

Combining the demultiplexer with dCas9-based gene networks enabled construction of pulsatile-signal filters and decoders.

We combine this demultiplexer with dCas9-based gene networks to construct pulsatile-signal filters and decoders.
Claim 16engineering resultsupports2021Source 1needs review

Combining the demultiplexer with dCas9-based gene networks enabled construction of pulsatile-signal filters and decoders.

We combine this demultiplexer with dCas9-based gene networks to construct pulsatile-signal filters and decoders.
Claim 17engineering resultsupports2021Source 1needs review

Combining the demultiplexer with dCas9-based gene networks enabled construction of pulsatile-signal filters and decoders.

We combine this demultiplexer with dCas9-based gene networks to construct pulsatile-signal filters and decoders.
Claim 18engineering resultsupports2021Source 1needs review

Combining the demultiplexer with dCas9-based gene networks enabled construction of pulsatile-signal filters and decoders.

We combine this demultiplexer with dCas9-based gene networks to construct pulsatile-signal filters and decoders.
Claim 19engineering resultsupports2021Source 1needs review

Combining the demultiplexer with dCas9-based gene networks enabled construction of pulsatile-signal filters and decoders.

We combine this demultiplexer with dCas9-based gene networks to construct pulsatile-signal filters and decoders.
Claim 20engineering resultsupports2021Source 1needs review

Combining the demultiplexer with dCas9-based gene networks enabled construction of pulsatile-signal filters and decoders.

We combine this demultiplexer with dCas9-based gene networks to construct pulsatile-signal filters and decoders.
Claim 21engineering resultsupports2021Source 1needs review

Combining the demultiplexer with dCas9-based gene networks enabled construction of pulsatile-signal filters and decoders.

We combine this demultiplexer with dCas9-based gene networks to construct pulsatile-signal filters and decoders.
Claim 22engineering resultsupports2021Source 1needs review

Light-responsive transcriptional regulators with differing response kinetics were used to build a falling-edge pulse-detector.

Exploiting light-responsive transcriptional regulators with differing response kinetics, we build a falling-edge pulse-detector
Claim 23engineering resultsupports2021Source 1needs review

Light-responsive transcriptional regulators with differing response kinetics were used to build a falling-edge pulse-detector.

Exploiting light-responsive transcriptional regulators with differing response kinetics, we build a falling-edge pulse-detector
Claim 24engineering resultsupports2021Source 1needs review

Light-responsive transcriptional regulators with differing response kinetics were used to build a falling-edge pulse-detector.

Exploiting light-responsive transcriptional regulators with differing response kinetics, we build a falling-edge pulse-detector
Claim 25engineering resultsupports2021Source 1needs review

Light-responsive transcriptional regulators with differing response kinetics were used to build a falling-edge pulse-detector.

Exploiting light-responsive transcriptional regulators with differing response kinetics, we build a falling-edge pulse-detector
Claim 26engineering resultsupports2021Source 1needs review

Light-responsive transcriptional regulators with differing response kinetics were used to build a falling-edge pulse-detector.

Exploiting light-responsive transcriptional regulators with differing response kinetics, we build a falling-edge pulse-detector
Claim 27engineering resultsupports2021Source 1needs review

Light-responsive transcriptional regulators with differing response kinetics were used to build a falling-edge pulse-detector.

Exploiting light-responsive transcriptional regulators with differing response kinetics, we build a falling-edge pulse-detector
Claim 28engineering resultsupports2021Source 1needs review

Light-responsive transcriptional regulators with differing response kinetics were used to build a falling-edge pulse-detector.

Exploiting light-responsive transcriptional regulators with differing response kinetics, we build a falling-edge pulse-detector
Claim 29functional capabilitysupports2021Source 1needs review

The falling-edge pulse-detector can be employed to demultiplex dynamically encoded signals.

show that this circuit can be employed to demultiplex dynamically encoded signals
Claim 30functional capabilitysupports2021Source 1needs review

The falling-edge pulse-detector can be employed to demultiplex dynamically encoded signals.

show that this circuit can be employed to demultiplex dynamically encoded signals
Claim 31functional capabilitysupports2021Source 1needs review

The falling-edge pulse-detector can be employed to demultiplex dynamically encoded signals.

show that this circuit can be employed to demultiplex dynamically encoded signals
Claim 32functional capabilitysupports2021Source 1needs review

The falling-edge pulse-detector can be employed to demultiplex dynamically encoded signals.

show that this circuit can be employed to demultiplex dynamically encoded signals
Claim 33functional capabilitysupports2021Source 1needs review

The falling-edge pulse-detector can be employed to demultiplex dynamically encoded signals.

show that this circuit can be employed to demultiplex dynamically encoded signals
Claim 34functional capabilitysupports2021Source 1needs review

The falling-edge pulse-detector can be employed to demultiplex dynamically encoded signals.

show that this circuit can be employed to demultiplex dynamically encoded signals
Claim 35functional capabilitysupports2021Source 1needs review

The falling-edge pulse-detector can be employed to demultiplex dynamically encoded signals.

show that this circuit can be employed to demultiplex dynamically encoded signals
Claim 36performance improvementsupports2021Source 1needs review

Dynamic multiplexing significantly increases the information transmission capacity from signal to gene expression state.

Applying information theory, we show that dynamic multiplexing significantly increases the information transmission capacity from signal to gene expression state.
Claim 37performance improvementsupports2021Source 1needs review

Dynamic multiplexing significantly increases the information transmission capacity from signal to gene expression state.

Applying information theory, we show that dynamic multiplexing significantly increases the information transmission capacity from signal to gene expression state.
Claim 38performance improvementsupports2021Source 1needs review

Dynamic multiplexing significantly increases the information transmission capacity from signal to gene expression state.

Applying information theory, we show that dynamic multiplexing significantly increases the information transmission capacity from signal to gene expression state.
Claim 39performance improvementsupports2021Source 1needs review

Dynamic multiplexing significantly increases the information transmission capacity from signal to gene expression state.

Applying information theory, we show that dynamic multiplexing significantly increases the information transmission capacity from signal to gene expression state.
Claim 40performance improvementsupports2021Source 1needs review

Dynamic multiplexing significantly increases the information transmission capacity from signal to gene expression state.

Applying information theory, we show that dynamic multiplexing significantly increases the information transmission capacity from signal to gene expression state.
Claim 41performance improvementsupports2021Source 1needs review

Dynamic multiplexing significantly increases the information transmission capacity from signal to gene expression state.

Applying information theory, we show that dynamic multiplexing significantly increases the information transmission capacity from signal to gene expression state.
Claim 42performance improvementsupports2021Source 1needs review

Dynamic multiplexing significantly increases the information transmission capacity from signal to gene expression state.

Applying information theory, we show that dynamic multiplexing significantly increases the information transmission capacity from signal to gene expression state.

Approval Evidence

1 source3 linked approval claimsfirst-pass slug dynamic-multiplexing
Applying information theory, we show that dynamic multiplexing significantly increases the information transmission capacity from signal to gene expression state

Source:

application demosupports

Dynamic multiplexing was used for precise multidimensional regulation of a heterologous metabolic pathway.

Finally, we use dynamic multiplexing for precise multidimensional regulation of a heterologous metabolic pathway.

Source:

design principlesupports

The reported systems elucidate design principles of dynamic information processing and provide synthetic systems capable of decoding complex signals for biotechnological applications.

Our results elucidate design principles of dynamic information processing and provide original synthetic systems capable of decoding complex signals for biotechnological applications.

Source:

performance improvementsupports

Dynamic multiplexing significantly increases the information transmission capacity from signal to gene expression state.

Applying information theory, we show that dynamic multiplexing significantly increases the information transmission capacity from signal to gene expression state.

Source:

Comparisons

Source-backed strengths

The source states that dynamic multiplexing significantly increases information transmission capacity from signal to gene expression state, based on an information-theoretic analysis. It was also demonstrated in synthetic gene networks that decode complex signals, including a falling-edge pulse detector built from light-responsive transcriptional regulators with differing response kinetics.

Source:

We combine this demultiplexer with dCas9-based gene networks to construct pulsatile-signal filters and decoders.

Source:

Exploiting light-responsive transcriptional regulators with differing response kinetics, we build a falling-edge pulse-detector

Source:

Applying information theory, we show that dynamic multiplexing significantly increases the information transmission capacity from signal to gene expression state.

Ranked Citations

  1. 1.

    Extracted from this source document.