Toolkit/human Inward Rectifier K+ Channel Kir2.1

human Inward Rectifier K+ Channel Kir2.1

Protein Domain·Research·Since 2012

Also known as: Kir2.1

Taxonomy: Mechanism Branch / Component. Workflows sit above the mechanism and technique branches rather than replacing them.

Summary

Human inward rectifier K+ channel Kir2.1 was used as a protein scaffold to identify engineerable allosteric sites through domain insertion permissibility mapping. Insertion of light-switchable domains into existing or latent allosteric sites, but not other positions, rendered Kir2.1 activity sensitive to light.

Usefulness & Problems

Why this is useful

Kir2.1 is useful as an experimental scaffold for locating positions that can support engineered allosteric control. The reported work indicates that permissive insertion sites can guide the placement of light-switchable domains to create light-responsive ion channel function.

Source:

In support of this notion, inserting light-switchable domains into either existing or latent allosteric sites, but not elsewhere, renders Kir2.1 activity sensitive to light.

Problem solved

This tool addresses the problem of identifying where regulatory domains can be inserted into an ion channel to achieve engineered allosteric control. The cited study establishes domain insertion permissibility in human Kir2.1 as an experimental paradigm for finding such engineerable sites.

Problem links

Need precise spatiotemporal control with light input

Derived

Human inward rectifier K+ channel Kir2.1 was used as a protein scaffold to identify engineerable allosteric sites by measuring domain insertion permissibility. Insertion of light-switchable domains into existing or latent allosteric sites, but not other positions, rendered Kir2.1 activity sensitive to light.

Taxonomy & Function

Primary hierarchy

Mechanism Branch

Component: A low-level protein part used inside a larger architecture that realizes a mechanism.

Techniques

No technique tags yet.

Target processes

No target processes tagged yet.

Input: Light

Implementation Constraints

cofactor dependency: cofactor requirement unknownencoding mode: genetically encodedimplementation constraint: context specific validationimplementation constraint: spectral hardware requirementoperating role: actuatorswitch architecture: uncaging

Implementation involved inserting exogenous domains into human Kir2.1 and assessing insertion permissibility as a readout for engineerable allostery. The supplied evidence supports domain insertion of light-switchable modules, but does not specify construct architecture, linker design, expression system, or electrophysiological assay details.

The evidence provided is limited to a single reported study centered on Kir2.1 as a test scaffold. The specific light-switchable domains, optical wavelengths, quantitative channel performance, and validation across broader biological contexts are not described in the supplied evidence.

Validation

Cell-freeBacteriaMammalianMouseHumanTherapeuticIndep. Replication

Supporting Sources

Ranked Claims

Claim 1context dependencesupports2018Source 1needs review

Many allosterically regulated sites in Kir2.1 or equivalent sites in homologs show differential permissibility that depends on the structural properties of the inserted domain.

Many allosterically regulated sites in Kir2.1 or sites equivalent to those regulated in homologs, such as G-protein-gated inward rectifier K + channels (GIRK), have differential permissibility; that is, for these sites permissibility depends on the structural properties of the inserted domain.
Claim 2context dependencesupports2018Source 1needs review

Many allosterically regulated sites in Kir2.1 or equivalent sites in homologs show differential permissibility that depends on the structural properties of the inserted domain.

Many allosterically regulated sites in Kir2.1 or sites equivalent to those regulated in homologs, such as G-protein-gated inward rectifier K + channels (GIRK), have differential permissibility; that is, for these sites permissibility depends on the structural properties of the inserted domain.
Claim 3context dependencesupports2018Source 1needs review

Many allosterically regulated sites in Kir2.1 or equivalent sites in homologs show differential permissibility that depends on the structural properties of the inserted domain.

Many allosterically regulated sites in Kir2.1 or sites equivalent to those regulated in homologs, such as G-protein-gated inward rectifier K + channels (GIRK), have differential permissibility; that is, for these sites permissibility depends on the structural properties of the inserted domain.
Claim 4context dependencesupports2018Source 1needs review

Many allosterically regulated sites in Kir2.1 or equivalent sites in homologs show differential permissibility that depends on the structural properties of the inserted domain.

Many allosterically regulated sites in Kir2.1 or sites equivalent to those regulated in homologs, such as G-protein-gated inward rectifier K + channels (GIRK), have differential permissibility; that is, for these sites permissibility depends on the structural properties of the inserted domain.
Claim 5context dependencesupports2018Source 1needs review

Many allosterically regulated sites in Kir2.1 or equivalent sites in homologs show differential permissibility that depends on the structural properties of the inserted domain.

Many allosterically regulated sites in Kir2.1 or sites equivalent to those regulated in homologs, such as G-protein-gated inward rectifier K + channels (GIRK), have differential permissibility; that is, for these sites permissibility depends on the structural properties of the inserted domain.
Claim 6context dependencesupports2018Source 1needs review

Many allosterically regulated sites in Kir2.1 or equivalent sites in homologs show differential permissibility that depends on the structural properties of the inserted domain.

Many allosterically regulated sites in Kir2.1 or sites equivalent to those regulated in homologs, such as G-protein-gated inward rectifier K + channels (GIRK), have differential permissibility; that is, for these sites permissibility depends on the structural properties of the inserted domain.
Claim 7context dependencesupports2018Source 1needs review

Many allosterically regulated sites in Kir2.1 or equivalent sites in homologs show differential permissibility that depends on the structural properties of the inserted domain.

Many allosterically regulated sites in Kir2.1 or sites equivalent to those regulated in homologs, such as G-protein-gated inward rectifier K + channels (GIRK), have differential permissibility; that is, for these sites permissibility depends on the structural properties of the inserted domain.
Claim 8context dependencesupports2018Source 1needs review

Many allosterically regulated sites in Kir2.1 or equivalent sites in homologs show differential permissibility that depends on the structural properties of the inserted domain.

Many allosterically regulated sites in Kir2.1 or sites equivalent to those regulated in homologs, such as G-protein-gated inward rectifier K + channels (GIRK), have differential permissibility; that is, for these sites permissibility depends on the structural properties of the inserted domain.
Claim 9context dependencesupports2018Source 1needs review

Many allosterically regulated sites in Kir2.1 or equivalent sites in homologs show differential permissibility that depends on the structural properties of the inserted domain.

Many allosterically regulated sites in Kir2.1 or sites equivalent to those regulated in homologs, such as G-protein-gated inward rectifier K + channels (GIRK), have differential permissibility; that is, for these sites permissibility depends on the structural properties of the inserted domain.
Claim 10context dependencesupports2018Source 1needs review

Many allosterically regulated sites in Kir2.1 or equivalent sites in homologs show differential permissibility that depends on the structural properties of the inserted domain.

Many allosterically regulated sites in Kir2.1 or sites equivalent to those regulated in homologs, such as G-protein-gated inward rectifier K + channels (GIRK), have differential permissibility; that is, for these sites permissibility depends on the structural properties of the inserted domain.
Claim 11context dependencesupports2018Source 1needs review

Many allosterically regulated sites in Kir2.1 or equivalent sites in homologs show differential permissibility that depends on the structural properties of the inserted domain.

Many allosterically regulated sites in Kir2.1 or sites equivalent to those regulated in homologs, such as G-protein-gated inward rectifier K + channels (GIRK), have differential permissibility; that is, for these sites permissibility depends on the structural properties of the inserted domain.
Claim 12context dependencesupports2018Source 1needs review

Many allosterically regulated sites in Kir2.1 or equivalent sites in homologs show differential permissibility that depends on the structural properties of the inserted domain.

Many allosterically regulated sites in Kir2.1 or sites equivalent to those regulated in homologs, such as G-protein-gated inward rectifier K + channels (GIRK), have differential permissibility; that is, for these sites permissibility depends on the structural properties of the inserted domain.
Claim 13context dependencesupports2018Source 1needs review

Many allosterically regulated sites in Kir2.1 or equivalent sites in homologs show differential permissibility that depends on the structural properties of the inserted domain.

Many allosterically regulated sites in Kir2.1 or sites equivalent to those regulated in homologs, such as G-protein-gated inward rectifier K + channels (GIRK), have differential permissibility; that is, for these sites permissibility depends on the structural properties of the inserted domain.
Claim 14context dependencesupports2018Source 1needs review

Many allosterically regulated sites in Kir2.1 or equivalent sites in homologs show differential permissibility that depends on the structural properties of the inserted domain.

Many allosterically regulated sites in Kir2.1 or sites equivalent to those regulated in homologs, such as G-protein-gated inward rectifier K + channels (GIRK), have differential permissibility; that is, for these sites permissibility depends on the structural properties of the inserted domain.
Claim 15context dependencesupports2018Source 1needs review

Many allosterically regulated sites in Kir2.1 or equivalent sites in homologs show differential permissibility that depends on the structural properties of the inserted domain.

Many allosterically regulated sites in Kir2.1 or sites equivalent to those regulated in homologs, such as G-protein-gated inward rectifier K + channels (GIRK), have differential permissibility; that is, for these sites permissibility depends on the structural properties of the inserted domain.
Claim 16context dependencesupports2018Source 1needs review

Many allosterically regulated sites in Kir2.1 or equivalent sites in homologs show differential permissibility that depends on the structural properties of the inserted domain.

Many allosterically regulated sites in Kir2.1 or sites equivalent to those regulated in homologs, such as G-protein-gated inward rectifier K + channels (GIRK), have differential permissibility; that is, for these sites permissibility depends on the structural properties of the inserted domain.
Claim 17experimental paradigmsupports2018Source 1needs review

Domain insertion permissibility is established as a new experimental paradigm to identify engineerable allosteric sites in human Kir2.1.

Here we use human Inward Rectifier K + Channel Kir2.1 to establish domain insertion ‘permissibility’ as a new experimental paradigm to identify engineerable allosteric sites.
Claim 18experimental paradigmsupports2018Source 1needs review

Domain insertion permissibility is established as a new experimental paradigm to identify engineerable allosteric sites in human Kir2.1.

Here we use human Inward Rectifier K + Channel Kir2.1 to establish domain insertion ‘permissibility’ as a new experimental paradigm to identify engineerable allosteric sites.
Claim 19experimental paradigmsupports2018Source 1needs review

Domain insertion permissibility is established as a new experimental paradigm to identify engineerable allosteric sites in human Kir2.1.

Here we use human Inward Rectifier K + Channel Kir2.1 to establish domain insertion ‘permissibility’ as a new experimental paradigm to identify engineerable allosteric sites.
Claim 20experimental paradigmsupports2018Source 1needs review

Domain insertion permissibility is established as a new experimental paradigm to identify engineerable allosteric sites in human Kir2.1.

Here we use human Inward Rectifier K + Channel Kir2.1 to establish domain insertion ‘permissibility’ as a new experimental paradigm to identify engineerable allosteric sites.
Claim 21experimental paradigmsupports2018Source 1needs review

Domain insertion permissibility is established as a new experimental paradigm to identify engineerable allosteric sites in human Kir2.1.

Here we use human Inward Rectifier K + Channel Kir2.1 to establish domain insertion ‘permissibility’ as a new experimental paradigm to identify engineerable allosteric sites.
Claim 22experimental paradigmsupports2018Source 1needs review

Domain insertion permissibility is established as a new experimental paradigm to identify engineerable allosteric sites in human Kir2.1.

Here we use human Inward Rectifier K + Channel Kir2.1 to establish domain insertion ‘permissibility’ as a new experimental paradigm to identify engineerable allosteric sites.
Claim 23experimental paradigmsupports2018Source 1needs review

Domain insertion permissibility is established as a new experimental paradigm to identify engineerable allosteric sites in human Kir2.1.

Here we use human Inward Rectifier K + Channel Kir2.1 to establish domain insertion ‘permissibility’ as a new experimental paradigm to identify engineerable allosteric sites.
Claim 24experimental paradigmsupports2018Source 1needs review

Domain insertion permissibility is established as a new experimental paradigm to identify engineerable allosteric sites in human Kir2.1.

Here we use human Inward Rectifier K + Channel Kir2.1 to establish domain insertion ‘permissibility’ as a new experimental paradigm to identify engineerable allosteric sites.
Claim 25experimental paradigmsupports2018Source 1needs review

Domain insertion permissibility is established as a new experimental paradigm to identify engineerable allosteric sites in human Kir2.1.

Here we use human Inward Rectifier K + Channel Kir2.1 to establish domain insertion ‘permissibility’ as a new experimental paradigm to identify engineerable allosteric sites.
Claim 26experimental paradigmsupports2018Source 1needs review

Domain insertion permissibility is established as a new experimental paradigm to identify engineerable allosteric sites in human Kir2.1.

Here we use human Inward Rectifier K + Channel Kir2.1 to establish domain insertion ‘permissibility’ as a new experimental paradigm to identify engineerable allosteric sites.
Claim 27experimental paradigmsupports2018Source 1needs review

Domain insertion permissibility is established as a new experimental paradigm to identify engineerable allosteric sites in human Kir2.1.

Here we use human Inward Rectifier K + Channel Kir2.1 to establish domain insertion ‘permissibility’ as a new experimental paradigm to identify engineerable allosteric sites.
Claim 28experimental paradigmsupports2018Source 1needs review

Domain insertion permissibility is established as a new experimental paradigm to identify engineerable allosteric sites in human Kir2.1.

Here we use human Inward Rectifier K + Channel Kir2.1 to establish domain insertion ‘permissibility’ as a new experimental paradigm to identify engineerable allosteric sites.
Claim 29experimental paradigmsupports2018Source 1needs review

Domain insertion permissibility is established as a new experimental paradigm to identify engineerable allosteric sites in human Kir2.1.

Here we use human Inward Rectifier K + Channel Kir2.1 to establish domain insertion ‘permissibility’ as a new experimental paradigm to identify engineerable allosteric sites.
Claim 30experimental paradigmsupports2018Source 1needs review

Domain insertion permissibility is established as a new experimental paradigm to identify engineerable allosteric sites in human Kir2.1.

Here we use human Inward Rectifier K + Channel Kir2.1 to establish domain insertion ‘permissibility’ as a new experimental paradigm to identify engineerable allosteric sites.
Claim 31experimental paradigmsupports2018Source 1needs review

Domain insertion permissibility is established as a new experimental paradigm to identify engineerable allosteric sites in human Kir2.1.

Here we use human Inward Rectifier K + Channel Kir2.1 to establish domain insertion ‘permissibility’ as a new experimental paradigm to identify engineerable allosteric sites.
Claim 32experimental paradigmsupports2018Source 1needs review

Domain insertion permissibility is established as a new experimental paradigm to identify engineerable allosteric sites in human Kir2.1.

Here we use human Inward Rectifier K + Channel Kir2.1 to establish domain insertion ‘permissibility’ as a new experimental paradigm to identify engineerable allosteric sites.
Claim 33functional engineering resultsupports2018Source 1needs review

Inserting light-switchable domains into existing or latent allosteric sites, but not elsewhere, renders Kir2.1 activity sensitive to light.

In support of this notion, inserting light-switchable domains into either existing or latent allosteric sites, but not elsewhere, renders Kir2.1 activity sensitive to light.
Claim 34functional engineering resultsupports2018Source 1needs review

Inserting light-switchable domains into existing or latent allosteric sites, but not elsewhere, renders Kir2.1 activity sensitive to light.

In support of this notion, inserting light-switchable domains into either existing or latent allosteric sites, but not elsewhere, renders Kir2.1 activity sensitive to light.
Claim 35functional engineering resultsupports2018Source 1needs review

Inserting light-switchable domains into existing or latent allosteric sites, but not elsewhere, renders Kir2.1 activity sensitive to light.

In support of this notion, inserting light-switchable domains into either existing or latent allosteric sites, but not elsewhere, renders Kir2.1 activity sensitive to light.
Claim 36functional engineering resultsupports2018Source 1needs review

Inserting light-switchable domains into existing or latent allosteric sites, but not elsewhere, renders Kir2.1 activity sensitive to light.

In support of this notion, inserting light-switchable domains into either existing or latent allosteric sites, but not elsewhere, renders Kir2.1 activity sensitive to light.
Claim 37functional engineering resultsupports2018Source 1needs review

Inserting light-switchable domains into existing or latent allosteric sites, but not elsewhere, renders Kir2.1 activity sensitive to light.

In support of this notion, inserting light-switchable domains into either existing or latent allosteric sites, but not elsewhere, renders Kir2.1 activity sensitive to light.
Claim 38functional engineering resultsupports2018Source 1needs review

Inserting light-switchable domains into existing or latent allosteric sites, but not elsewhere, renders Kir2.1 activity sensitive to light.

In support of this notion, inserting light-switchable domains into either existing or latent allosteric sites, but not elsewhere, renders Kir2.1 activity sensitive to light.
Claim 39functional engineering resultsupports2018Source 1needs review

Inserting light-switchable domains into existing or latent allosteric sites, but not elsewhere, renders Kir2.1 activity sensitive to light.

In support of this notion, inserting light-switchable domains into either existing or latent allosteric sites, but not elsewhere, renders Kir2.1 activity sensitive to light.
Claim 40functional engineering resultsupports2018Source 1needs review

Inserting light-switchable domains into existing or latent allosteric sites, but not elsewhere, renders Kir2.1 activity sensitive to light.

In support of this notion, inserting light-switchable domains into either existing or latent allosteric sites, but not elsewhere, renders Kir2.1 activity sensitive to light.
Claim 41functional engineering resultsupports2018Source 1needs review

Inserting light-switchable domains into existing or latent allosteric sites, but not elsewhere, renders Kir2.1 activity sensitive to light.

In support of this notion, inserting light-switchable domains into either existing or latent allosteric sites, but not elsewhere, renders Kir2.1 activity sensitive to light.
Claim 42functional engineering resultsupports2018Source 1needs review

Inserting light-switchable domains into existing or latent allosteric sites, but not elsewhere, renders Kir2.1 activity sensitive to light.

In support of this notion, inserting light-switchable domains into either existing or latent allosteric sites, but not elsewhere, renders Kir2.1 activity sensitive to light.
Claim 43functional engineering resultsupports2018Source 1needs review

Inserting light-switchable domains into existing or latent allosteric sites, but not elsewhere, renders Kir2.1 activity sensitive to light.

In support of this notion, inserting light-switchable domains into either existing or latent allosteric sites, but not elsewhere, renders Kir2.1 activity sensitive to light.
Claim 44mechanistic associationsupports2018Source 1needs review

In Kir2.1, domain insertion permissibility is best explained by dynamic protein properties such as conformational flexibility.

We find that permissibility is best explained by dynamic protein properties, such as conformational flexibility.
Claim 45mechanistic associationsupports2018Source 1needs review

In Kir2.1, domain insertion permissibility is best explained by dynamic protein properties such as conformational flexibility.

We find that permissibility is best explained by dynamic protein properties, such as conformational flexibility.
Claim 46mechanistic associationsupports2018Source 1needs review

In Kir2.1, domain insertion permissibility is best explained by dynamic protein properties such as conformational flexibility.

We find that permissibility is best explained by dynamic protein properties, such as conformational flexibility.
Claim 47mechanistic associationsupports2018Source 1needs review

In Kir2.1, domain insertion permissibility is best explained by dynamic protein properties such as conformational flexibility.

We find that permissibility is best explained by dynamic protein properties, such as conformational flexibility.
Claim 48mechanistic associationsupports2018Source 1needs review

In Kir2.1, domain insertion permissibility is best explained by dynamic protein properties such as conformational flexibility.

We find that permissibility is best explained by dynamic protein properties, such as conformational flexibility.
Claim 49mechanistic associationsupports2018Source 1needs review

In Kir2.1, domain insertion permissibility is best explained by dynamic protein properties such as conformational flexibility.

We find that permissibility is best explained by dynamic protein properties, such as conformational flexibility.
Claim 50mechanistic associationsupports2018Source 1needs review

In Kir2.1, domain insertion permissibility is best explained by dynamic protein properties such as conformational flexibility.

We find that permissibility is best explained by dynamic protein properties, such as conformational flexibility.
Claim 51mechanistic associationsupports2018Source 1needs review

In Kir2.1, domain insertion permissibility is best explained by dynamic protein properties such as conformational flexibility.

We find that permissibility is best explained by dynamic protein properties, such as conformational flexibility.
Claim 52mechanistic associationsupports2018Source 1needs review

In Kir2.1, domain insertion permissibility is best explained by dynamic protein properties such as conformational flexibility.

We find that permissibility is best explained by dynamic protein properties, such as conformational flexibility.
Claim 53mechanistic associationsupports2018Source 1needs review

In Kir2.1, domain insertion permissibility is best explained by dynamic protein properties such as conformational flexibility.

We find that permissibility is best explained by dynamic protein properties, such as conformational flexibility.
Claim 54mechanistic associationsupports2018Source 1needs review

In Kir2.1, domain insertion permissibility is best explained by dynamic protein properties such as conformational flexibility.

We find that permissibility is best explained by dynamic protein properties, such as conformational flexibility.
Claim 55mechanistic associationsupports2018Source 1needs review

In Kir2.1, domain insertion permissibility is best explained by dynamic protein properties such as conformational flexibility.

We find that permissibility is best explained by dynamic protein properties, such as conformational flexibility.
Claim 56mechanistic associationsupports2018Source 1needs review

In Kir2.1, domain insertion permissibility is best explained by dynamic protein properties such as conformational flexibility.

We find that permissibility is best explained by dynamic protein properties, such as conformational flexibility.
Claim 57mechanistic associationsupports2018Source 1needs review

In Kir2.1, domain insertion permissibility is best explained by dynamic protein properties such as conformational flexibility.

We find that permissibility is best explained by dynamic protein properties, such as conformational flexibility.
Claim 58mechanistic associationsupports2018Source 1needs review

In Kir2.1, domain insertion permissibility is best explained by dynamic protein properties such as conformational flexibility.

We find that permissibility is best explained by dynamic protein properties, such as conformational flexibility.
Claim 59mechanistic associationsupports2018Source 1needs review

In Kir2.1, domain insertion permissibility is best explained by dynamic protein properties such as conformational flexibility.

We find that permissibility is best explained by dynamic protein properties, such as conformational flexibility.
Claim 60proposed metricsupports2018Source 1needs review

Differential permissibility is proposed as a metric of both existing and latent allostery in Kir2.1.

Our data and the well-established link between protein dynamics and allostery led us to propose that differential permissibility is a metric of both existing and latent allostery in Kir2.1.
Claim 61proposed metricsupports2018Source 1needs review

Differential permissibility is proposed as a metric of both existing and latent allostery in Kir2.1.

Our data and the well-established link between protein dynamics and allostery led us to propose that differential permissibility is a metric of both existing and latent allostery in Kir2.1.
Claim 62proposed metricsupports2018Source 1needs review

Differential permissibility is proposed as a metric of both existing and latent allostery in Kir2.1.

Our data and the well-established link between protein dynamics and allostery led us to propose that differential permissibility is a metric of both existing and latent allostery in Kir2.1.
Claim 63proposed metricsupports2018Source 1needs review

Differential permissibility is proposed as a metric of both existing and latent allostery in Kir2.1.

Our data and the well-established link between protein dynamics and allostery led us to propose that differential permissibility is a metric of both existing and latent allostery in Kir2.1.
Claim 64proposed metricsupports2018Source 1needs review

Differential permissibility is proposed as a metric of both existing and latent allostery in Kir2.1.

Our data and the well-established link between protein dynamics and allostery led us to propose that differential permissibility is a metric of both existing and latent allostery in Kir2.1.
Claim 65proposed metricsupports2018Source 1needs review

Differential permissibility is proposed as a metric of both existing and latent allostery in Kir2.1.

Our data and the well-established link between protein dynamics and allostery led us to propose that differential permissibility is a metric of both existing and latent allostery in Kir2.1.
Claim 66proposed metricsupports2018Source 1needs review

Differential permissibility is proposed as a metric of both existing and latent allostery in Kir2.1.

Our data and the well-established link between protein dynamics and allostery led us to propose that differential permissibility is a metric of both existing and latent allostery in Kir2.1.
Claim 67proposed metricsupports2018Source 1needs review

Differential permissibility is proposed as a metric of both existing and latent allostery in Kir2.1.

Our data and the well-established link between protein dynamics and allostery led us to propose that differential permissibility is a metric of both existing and latent allostery in Kir2.1.
Claim 68proposed metricsupports2018Source 1needs review

Differential permissibility is proposed as a metric of both existing and latent allostery in Kir2.1.

Our data and the well-established link between protein dynamics and allostery led us to propose that differential permissibility is a metric of both existing and latent allostery in Kir2.1.
Claim 69proposed metricsupports2018Source 1needs review

Differential permissibility is proposed as a metric of both existing and latent allostery in Kir2.1.

Our data and the well-established link between protein dynamics and allostery led us to propose that differential permissibility is a metric of both existing and latent allostery in Kir2.1.
Claim 70proposed metricsupports2018Source 1needs review

Differential permissibility is proposed as a metric of both existing and latent allostery in Kir2.1.

Our data and the well-established link between protein dynamics and allostery led us to propose that differential permissibility is a metric of both existing and latent allostery in Kir2.1.
Claim 71proposed metricsupports2018Source 1needs review

Differential permissibility is proposed as a metric of both existing and latent allostery in Kir2.1.

Our data and the well-established link between protein dynamics and allostery led us to propose that differential permissibility is a metric of both existing and latent allostery in Kir2.1.
Claim 72proposed metricsupports2018Source 1needs review

Differential permissibility is proposed as a metric of both existing and latent allostery in Kir2.1.

Our data and the well-established link between protein dynamics and allostery led us to propose that differential permissibility is a metric of both existing and latent allostery in Kir2.1.
Claim 73proposed metricsupports2018Source 1needs review

Differential permissibility is proposed as a metric of both existing and latent allostery in Kir2.1.

Our data and the well-established link between protein dynamics and allostery led us to propose that differential permissibility is a metric of both existing and latent allostery in Kir2.1.
Claim 74proposed metricsupports2018Source 1needs review

Differential permissibility is proposed as a metric of both existing and latent allostery in Kir2.1.

Our data and the well-established link between protein dynamics and allostery led us to propose that differential permissibility is a metric of both existing and latent allostery in Kir2.1.
Claim 75proposed metricsupports2018Source 1needs review

Differential permissibility is proposed as a metric of both existing and latent allostery in Kir2.1.

Our data and the well-established link between protein dynamics and allostery led us to propose that differential permissibility is a metric of both existing and latent allostery in Kir2.1.
Claim 76allosteric capacity inferencesupports2012Source 2needs review

Differential permissibility is proposed as a metric of latent allosteric capacity in Kir2.1.

Our data and the well-established link between protein dynamics and allostery led us to propose that differential permissibility is a metric of latent allosteric capacity in Kir2.1.
Claim 77allosteric capacity inferencesupports2012Source 2needs review

Differential permissibility is proposed as a metric of latent allosteric capacity in Kir2.1.

Our data and the well-established link between protein dynamics and allostery led us to propose that differential permissibility is a metric of latent allosteric capacity in Kir2.1.
Claim 78allosteric capacity inferencesupports2012Source 2needs review

Differential permissibility is proposed as a metric of latent allosteric capacity in Kir2.1.

Our data and the well-established link between protein dynamics and allostery led us to propose that differential permissibility is a metric of latent allosteric capacity in Kir2.1.
Claim 79allosteric capacity inferencesupports2012Source 2needs review

Differential permissibility is proposed as a metric of latent allosteric capacity in Kir2.1.

Our data and the well-established link between protein dynamics and allostery led us to propose that differential permissibility is a metric of latent allosteric capacity in Kir2.1.
Claim 80allosteric capacity inferencesupports2012Source 2needs review

Differential permissibility is proposed as a metric of latent allosteric capacity in Kir2.1.

Our data and the well-established link between protein dynamics and allostery led us to propose that differential permissibility is a metric of latent allosteric capacity in Kir2.1.
Claim 81allosteric capacity inferencesupports2012Source 2needs review

Differential permissibility is proposed as a metric of latent allosteric capacity in Kir2.1.

Our data and the well-established link between protein dynamics and allostery led us to propose that differential permissibility is a metric of latent allosteric capacity in Kir2.1.
Claim 82allosteric capacity inferencesupports2012Source 2needs review

Differential permissibility is proposed as a metric of latent allosteric capacity in Kir2.1.

Our data and the well-established link between protein dynamics and allostery led us to propose that differential permissibility is a metric of latent allosteric capacity in Kir2.1.
Claim 83allosteric capacity inferencesupports2012Source 2needs review

Differential permissibility is proposed as a metric of latent allosteric capacity in Kir2.1.

Our data and the well-established link between protein dynamics and allostery led us to propose that differential permissibility is a metric of latent allosteric capacity in Kir2.1.
Claim 84allosteric capacity inferencesupports2012Source 2needs review

Differential permissibility is proposed as a metric of latent allosteric capacity in Kir2.1.

Our data and the well-established link between protein dynamics and allostery led us to propose that differential permissibility is a metric of latent allosteric capacity in Kir2.1.
Claim 85allosteric capacity inferencesupports2012Source 2needs review

Differential permissibility is proposed as a metric of latent allosteric capacity in Kir2.1.

Our data and the well-established link between protein dynamics and allostery led us to propose that differential permissibility is a metric of latent allosteric capacity in Kir2.1.
Claim 86allosteric capacity inferencesupports2012Source 2needs review

Differential permissibility is proposed as a metric of latent allosteric capacity in Kir2.1.

Our data and the well-established link between protein dynamics and allostery led us to propose that differential permissibility is a metric of latent allosteric capacity in Kir2.1.
Claim 87allosteric capacity inferencesupports2012Source 2needs review

Differential permissibility is proposed as a metric of latent allosteric capacity in Kir2.1.

Our data and the well-established link between protein dynamics and allostery led us to propose that differential permissibility is a metric of latent allosteric capacity in Kir2.1.
Claim 88allosteric capacity inferencesupports2012Source 2needs review

Differential permissibility is proposed as a metric of latent allosteric capacity in Kir2.1.

Our data and the well-established link between protein dynamics and allostery led us to propose that differential permissibility is a metric of latent allosteric capacity in Kir2.1.
Claim 89allosteric capacity inferencesupports2012Source 2needs review

Differential permissibility is proposed as a metric of latent allosteric capacity in Kir2.1.

Our data and the well-established link between protein dynamics and allostery led us to propose that differential permissibility is a metric of latent allosteric capacity in Kir2.1.
Claim 90allosteric capacity inferencesupports2012Source 2needs review

Differential permissibility is proposed as a metric of latent allosteric capacity in Kir2.1.

Our data and the well-established link between protein dynamics and allostery led us to propose that differential permissibility is a metric of latent allosteric capacity in Kir2.1.
Claim 91allosteric capacity inferencesupports2012Source 2needs review

Differential permissibility is proposed as a metric of latent allosteric capacity in Kir2.1.

Our data and the well-established link between protein dynamics and allostery led us to propose that differential permissibility is a metric of latent allosteric capacity in Kir2.1.
Claim 92allosteric capacity inferencesupports2012Source 2needs review

Differential permissibility is proposed as a metric of latent allosteric capacity in Kir2.1.

Our data and the well-established link between protein dynamics and allostery led us to propose that differential permissibility is a metric of latent allosteric capacity in Kir2.1.
Claim 93engineered responsivenesssupports2012Source 2needs review

Inserting light-switchable domains into Kir2.1 sites with predicted latent allosteric capacity renders Kir2.1 activity sensitive to light.

In support of this notion, inserting light-switchable domains into sites with predicted latent allosteric capacity renders Kir2.1 activity sensitive to light.
Claim 94engineered responsivenesssupports2012Source 2needs review

Inserting light-switchable domains into Kir2.1 sites with predicted latent allosteric capacity renders Kir2.1 activity sensitive to light.

In support of this notion, inserting light-switchable domains into sites with predicted latent allosteric capacity renders Kir2.1 activity sensitive to light.
Claim 95engineered responsivenesssupports2012Source 2needs review

Inserting light-switchable domains into Kir2.1 sites with predicted latent allosteric capacity renders Kir2.1 activity sensitive to light.

In support of this notion, inserting light-switchable domains into sites with predicted latent allosteric capacity renders Kir2.1 activity sensitive to light.
Claim 96engineered responsivenesssupports2012Source 2needs review

Inserting light-switchable domains into Kir2.1 sites with predicted latent allosteric capacity renders Kir2.1 activity sensitive to light.

In support of this notion, inserting light-switchable domains into sites with predicted latent allosteric capacity renders Kir2.1 activity sensitive to light.
Claim 97engineered responsivenesssupports2012Source 2needs review

Inserting light-switchable domains into Kir2.1 sites with predicted latent allosteric capacity renders Kir2.1 activity sensitive to light.

In support of this notion, inserting light-switchable domains into sites with predicted latent allosteric capacity renders Kir2.1 activity sensitive to light.
Claim 98engineered responsivenesssupports2012Source 2needs review

Inserting light-switchable domains into Kir2.1 sites with predicted latent allosteric capacity renders Kir2.1 activity sensitive to light.

In support of this notion, inserting light-switchable domains into sites with predicted latent allosteric capacity renders Kir2.1 activity sensitive to light.
Claim 99engineered responsivenesssupports2012Source 2needs review

Inserting light-switchable domains into Kir2.1 sites with predicted latent allosteric capacity renders Kir2.1 activity sensitive to light.

In support of this notion, inserting light-switchable domains into sites with predicted latent allosteric capacity renders Kir2.1 activity sensitive to light.
Claim 100engineered responsivenesssupports2012Source 2needs review

Inserting light-switchable domains into Kir2.1 sites with predicted latent allosteric capacity renders Kir2.1 activity sensitive to light.

In support of this notion, inserting light-switchable domains into sites with predicted latent allosteric capacity renders Kir2.1 activity sensitive to light.
Claim 101engineered responsivenesssupports2012Source 2needs review

Inserting light-switchable domains into Kir2.1 sites with predicted latent allosteric capacity renders Kir2.1 activity sensitive to light.

In support of this notion, inserting light-switchable domains into sites with predicted latent allosteric capacity renders Kir2.1 activity sensitive to light.
Claim 102engineered responsivenesssupports2012Source 2needs review

Inserting light-switchable domains into Kir2.1 sites with predicted latent allosteric capacity renders Kir2.1 activity sensitive to light.

In support of this notion, inserting light-switchable domains into sites with predicted latent allosteric capacity renders Kir2.1 activity sensitive to light.
Claim 103engineered responsivenesssupports2012Source 2needs review

Inserting light-switchable domains into Kir2.1 sites with predicted latent allosteric capacity renders Kir2.1 activity sensitive to light.

In support of this notion, inserting light-switchable domains into sites with predicted latent allosteric capacity renders Kir2.1 activity sensitive to light.
Claim 104engineered responsivenesssupports2012Source 2needs review

Inserting light-switchable domains into Kir2.1 sites with predicted latent allosteric capacity renders Kir2.1 activity sensitive to light.

In support of this notion, inserting light-switchable domains into sites with predicted latent allosteric capacity renders Kir2.1 activity sensitive to light.
Claim 105engineered responsivenesssupports2012Source 2needs review

Inserting light-switchable domains into Kir2.1 sites with predicted latent allosteric capacity renders Kir2.1 activity sensitive to light.

In support of this notion, inserting light-switchable domains into sites with predicted latent allosteric capacity renders Kir2.1 activity sensitive to light.
Claim 106engineered responsivenesssupports2012Source 2needs review

Inserting light-switchable domains into Kir2.1 sites with predicted latent allosteric capacity renders Kir2.1 activity sensitive to light.

In support of this notion, inserting light-switchable domains into sites with predicted latent allosteric capacity renders Kir2.1 activity sensitive to light.
Claim 107engineered responsivenesssupports2012Source 2needs review

Inserting light-switchable domains into Kir2.1 sites with predicted latent allosteric capacity renders Kir2.1 activity sensitive to light.

In support of this notion, inserting light-switchable domains into sites with predicted latent allosteric capacity renders Kir2.1 activity sensitive to light.
Claim 108engineered responsivenesssupports2012Source 2needs review

Inserting light-switchable domains into Kir2.1 sites with predicted latent allosteric capacity renders Kir2.1 activity sensitive to light.

In support of this notion, inserting light-switchable domains into sites with predicted latent allosteric capacity renders Kir2.1 activity sensitive to light.
Claim 109engineered responsivenesssupports2012Source 2needs review

Inserting light-switchable domains into Kir2.1 sites with predicted latent allosteric capacity renders Kir2.1 activity sensitive to light.

In support of this notion, inserting light-switchable domains into sites with predicted latent allosteric capacity renders Kir2.1 activity sensitive to light.
Claim 110structure function relationshipsupports2012Source 2needs review

In Kir2.1, site-specific permissibility to domain insertion is best explained by dynamic protein properties such as conformational flexibility.

We find that permissibility is best explained by dynamic protein properties, such as conformational flexibility.
Claim 111structure function relationshipsupports2012Source 2needs review

In Kir2.1, site-specific permissibility to domain insertion is best explained by dynamic protein properties such as conformational flexibility.

We find that permissibility is best explained by dynamic protein properties, such as conformational flexibility.
Claim 112structure function relationshipsupports2012Source 2needs review

In Kir2.1, site-specific permissibility to domain insertion is best explained by dynamic protein properties such as conformational flexibility.

We find that permissibility is best explained by dynamic protein properties, such as conformational flexibility.
Claim 113structure function relationshipsupports2012Source 2needs review

In Kir2.1, site-specific permissibility to domain insertion is best explained by dynamic protein properties such as conformational flexibility.

We find that permissibility is best explained by dynamic protein properties, such as conformational flexibility.
Claim 114structure function relationshipsupports2012Source 2needs review

In Kir2.1, site-specific permissibility to domain insertion is best explained by dynamic protein properties such as conformational flexibility.

We find that permissibility is best explained by dynamic protein properties, such as conformational flexibility.
Claim 115structure function relationshipsupports2012Source 2needs review

In Kir2.1, site-specific permissibility to domain insertion is best explained by dynamic protein properties such as conformational flexibility.

We find that permissibility is best explained by dynamic protein properties, such as conformational flexibility.
Claim 116structure function relationshipsupports2012Source 2needs review

In Kir2.1, site-specific permissibility to domain insertion is best explained by dynamic protein properties such as conformational flexibility.

We find that permissibility is best explained by dynamic protein properties, such as conformational flexibility.
Claim 117structure function relationshipsupports2012Source 2needs review

In Kir2.1, site-specific permissibility to domain insertion is best explained by dynamic protein properties such as conformational flexibility.

We find that permissibility is best explained by dynamic protein properties, such as conformational flexibility.
Claim 118structure function relationshipsupports2012Source 2needs review

In Kir2.1, site-specific permissibility to domain insertion is best explained by dynamic protein properties such as conformational flexibility.

We find that permissibility is best explained by dynamic protein properties, such as conformational flexibility.
Claim 119structure function relationshipsupports2012Source 2needs review

In Kir2.1, site-specific permissibility to domain insertion is best explained by dynamic protein properties such as conformational flexibility.

We find that permissibility is best explained by dynamic protein properties, such as conformational flexibility.
Claim 120structure function relationshipsupports2012Source 2needs review

In Kir2.1, site-specific permissibility to domain insertion is best explained by dynamic protein properties such as conformational flexibility.

We find that permissibility is best explained by dynamic protein properties, such as conformational flexibility.
Claim 121structure function relationshipsupports2012Source 2needs review

In Kir2.1, site-specific permissibility to domain insertion is best explained by dynamic protein properties such as conformational flexibility.

We find that permissibility is best explained by dynamic protein properties, such as conformational flexibility.
Claim 122structure function relationshipsupports2012Source 2needs review

In Kir2.1, site-specific permissibility to domain insertion is best explained by dynamic protein properties such as conformational flexibility.

We find that permissibility is best explained by dynamic protein properties, such as conformational flexibility.
Claim 123structure function relationshipsupports2012Source 2needs review

In Kir2.1, site-specific permissibility to domain insertion is best explained by dynamic protein properties such as conformational flexibility.

We find that permissibility is best explained by dynamic protein properties, such as conformational flexibility.
Claim 124structure function relationshipsupports2012Source 2needs review

In Kir2.1, site-specific permissibility to domain insertion is best explained by dynamic protein properties such as conformational flexibility.

We find that permissibility is best explained by dynamic protein properties, such as conformational flexibility.
Claim 125structure function relationshipsupports2012Source 2needs review

In Kir2.1, site-specific permissibility to domain insertion is best explained by dynamic protein properties such as conformational flexibility.

We find that permissibility is best explained by dynamic protein properties, such as conformational flexibility.
Claim 126structure function relationshipsupports2012Source 2needs review

In Kir2.1, site-specific permissibility to domain insertion is best explained by dynamic protein properties such as conformational flexibility.

We find that permissibility is best explained by dynamic protein properties, such as conformational flexibility.

Approval Evidence

2 sources8 linked approval claimsfirst-pass slug human-inward-rectifier-k-channel-kir2-1
Here we use human Inward Rectifier K + Channel Kir2.1 to establish domain insertion ‘permissibility’ as a new experimental paradigm to identify engineerable allosteric sites.

Source:

Here we use human Inward Rectifier K+ Channel Kir2.1

Source:

context dependencesupports

Many allosterically regulated sites in Kir2.1 or equivalent sites in homologs show differential permissibility that depends on the structural properties of the inserted domain.

Many allosterically regulated sites in Kir2.1 or sites equivalent to those regulated in homologs, such as G-protein-gated inward rectifier K + channels (GIRK), have differential permissibility; that is, for these sites permissibility depends on the structural properties of the inserted domain.

Source:

experimental paradigmsupports

Domain insertion permissibility is established as a new experimental paradigm to identify engineerable allosteric sites in human Kir2.1.

Here we use human Inward Rectifier K + Channel Kir2.1 to establish domain insertion ‘permissibility’ as a new experimental paradigm to identify engineerable allosteric sites.

Source:

functional engineering resultsupports

Inserting light-switchable domains into existing or latent allosteric sites, but not elsewhere, renders Kir2.1 activity sensitive to light.

In support of this notion, inserting light-switchable domains into either existing or latent allosteric sites, but not elsewhere, renders Kir2.1 activity sensitive to light.

Source:

mechanistic associationsupports

In Kir2.1, domain insertion permissibility is best explained by dynamic protein properties such as conformational flexibility.

We find that permissibility is best explained by dynamic protein properties, such as conformational flexibility.

Source:

proposed metricsupports

Differential permissibility is proposed as a metric of both existing and latent allostery in Kir2.1.

Our data and the well-established link between protein dynamics and allostery led us to propose that differential permissibility is a metric of both existing and latent allostery in Kir2.1.

Source:

allosteric capacity inferencesupports

Differential permissibility is proposed as a metric of latent allosteric capacity in Kir2.1.

Our data and the well-established link between protein dynamics and allostery led us to propose that differential permissibility is a metric of latent allosteric capacity in Kir2.1.

Source:

engineered responsivenesssupports

Inserting light-switchable domains into Kir2.1 sites with predicted latent allosteric capacity renders Kir2.1 activity sensitive to light.

In support of this notion, inserting light-switchable domains into sites with predicted latent allosteric capacity renders Kir2.1 activity sensitive to light.

Source:

structure function relationshipsupports

In Kir2.1, site-specific permissibility to domain insertion is best explained by dynamic protein properties such as conformational flexibility.

We find that permissibility is best explained by dynamic protein properties, such as conformational flexibility.

Source:

Comparisons

Source-backed strengths

The main strength is that insertion permissibility in Kir2.1 was directly linked to successful engineering of light sensitivity, with functional effects observed when light-switchable domains were inserted into existing or latent allosteric sites but not elsewhere. The evidence also indicates that permissibility can reveal both known and previously latent allosteric positions.

Compared with CRY2 C-terminal tail

human Inward Rectifier K+ Channel Kir2.1 and CRY2 C-terminal tail address a similar problem space.

Shared frame: same top-level item type; shared mechanisms: allosteric switching; same primary input modality: light

Strengths here: appears more independently replicated; looks easier to implement in practice.

human Inward Rectifier K+ Channel Kir2.1 and Light-Oxygen-Voltage domain address a similar problem space.

Shared frame: same top-level item type; shared mechanisms: conformational uncaging, conformational_uncaging; same primary input modality: light

Strengths here: appears more independently replicated; looks easier to implement in practice.

human Inward Rectifier K+ Channel Kir2.1 and photoactivatable inhibitor for cyclic-AMP dependent kinase (PKA) address a similar problem space.

Shared frame: same top-level item type; shared mechanisms: allosteric switching; same primary input modality: light

Strengths here: appears more independently replicated; looks easier to implement in practice.

Ranked Citations

  1. 1.

    Extracted from this source document.

  2. 2.
    StructuralSource 2Nature Communications2012Claim 91Claim 92Claim 91

    Extracted from this source document.