Source 1primary paper2026MED
Toolkit/iFish
iFish
Also known as: iFish database
Taxonomy: Technique Branch / Method. Workflows sit above the mechanism and technique branches rather than replacing them.
Summary
Finally, we established the iFish database (https://gonglab.hzau.edu.cn/iFish/), a user-friendly platform that supports interactive browsing, visualization, and download.
Usefulness & Problems
No literature-backed usefulness or problem-fit explainer has been materialized for this record yet.
Taxonomy & Function
Primary hierarchy
Technique Branch
Method: A concrete computational method used to design, rank, or analyze an engineered system.
Mechanisms
No mechanism tags yet.
Target processes
transcriptionValidation
Cell-freeBacteriaMammalianMouseHumanTherapeuticIndep. Replication
Supporting Sources
Ranked Claims
iFish identified 137.04 million single-nucleotide polymorphisms and 45.52 million insertions/deletions from 884 whole-genome sequencing datasets.
insertions/deletions identified 45.52 millionsingle-nucleotide polymorphisms identified 137.04 millionwhole-genome sequencing datasets 884 datasets
iFish includes 50 proteomics projects for protein expression profiling and curates gene annotations, homologous genes, transcription factors, regulatory networks, co-expression networks, and cross-species noncoding RNA conservation analyses.
gene annotation entries curated 2.7 millionproteomics projects 50 projectstranscription factors annotated 192107 entries
iFish provides genome-wide maps of histone modifications, chromatin accessibility, DNA methylation, and three-dimensional chromatin interactions by integrating 1563 epigenetics sequencing datasets.
epigenetics sequencing datasets 1563 datasets
iFish quantified messenger RNAs, long noncoding RNAs, circular RNAs, and mature miRNAs using bulk RNA-seq, single-cell RNA-seq, and miRNA-seq datasets.
bulk RNA-seq datasets 9797 datasetscircular RNAs quantified 197554 entrieslong noncoding RNAs quantified 287873 entriesmature miRNAs quantified 6068 entriesmessenger RNAs quantified 1.87 millionmiRNA-seq datasets 840 datasetssingle-cell RNA-seq datasets 293 datasets
iFish is a curated fish multi-omics database integrating genome, transcriptome, epigenome, and proteome datasets from 88 fish species.
fish species covered 88 species
Approval Evidence
1 source5 linked approval claimsfirst-pass slug ifish
Finally, we established the iFish database (https://gonglab.hzau.edu.cn/iFish/), a user-friendly platform that supports interactive browsing, visualization, and download.
Source:
data contentsupports
iFish identified 137.04 million single-nucleotide polymorphisms and 45.52 million insertions/deletions from 884 whole-genome sequencing datasets.
Source:
data contentsupports
iFish includes 50 proteomics projects for protein expression profiling and curates gene annotations, homologous genes, transcription factors, regulatory networks, co-expression networks, and cross-species noncoding RNA conservation analyses.
Source:
data contentsupports
iFish provides genome-wide maps of histone modifications, chromatin accessibility, DNA methylation, and three-dimensional chromatin interactions by integrating 1563 epigenetics sequencing datasets.
Source:
data contentsupports
iFish quantified messenger RNAs, long noncoding RNAs, circular RNAs, and mature miRNAs using bulk RNA-seq, single-cell RNA-seq, and miRNA-seq datasets.
Source:
resource introductionsupports
iFish is a curated fish multi-omics database integrating genome, transcriptome, epigenome, and proteome datasets from 88 fish species.
Source:
Comparisons
No literature-backed comparison notes have been materialized for this record yet.
Ranked Citations
- 1.