Toolkit/mathematical modeling

mathematical modeling

Computational Method·Research·Since 2021

Also known as: quantitative model systems

Taxonomy: Technique Branch / Method. Workflows sit above the mechanism and technique branches rather than replacing them.

Summary

Mathematical modeling is a computational method used to guide the rational design of synthetic gene circuits. The cited literature also places it alongside live-cell imaging and within quantitative model systems used to study microbial drug resistance and spatial-temporal features of cancer in mammalian cells.

Usefulness & Problems

Why this is useful

This method is useful for quantitatively informing synthetic gene circuit design rather than relying solely on trial-and-error construction. The cited sources further indicate utility in model systems for analyzing drug resistance in microbes and spatial-temporal cancer biology in mammalian cells.

Source:

Our findings highlight key sources of imprecision within light-inducible dimer systems and provide tools that allow greater control of subcellular protein localization across diverse cell biological applications.

Source:

the improved Light-Inducible Dimer (iLID) system, offer the ability to selectively recruit components to subcellular locations, such as micron-scale regions of the plasma membrane

Source:

These tools, including the improved Light-Inducible Dimer (iLID) system, offer the ability to selectively recruit components to subcellular locations, such as micron-scale regions of the plasma membrane.

Source:

Mathematical models and synthetic gene circuits are powerful tools to develop novel treatments for patients with drug-resistant infections and cancers.

Problem solved

Mathematical modeling helps address the problem of rationally designing synthetic gene circuits. The available evidence also supports its use in studying complex biological behaviors, specifically antimicrobial resistance and cancer-related spatial-temporal dynamics.

Source:

Our findings highlight key sources of imprecision within light-inducible dimer systems and provide tools that allow greater control of subcellular protein localization across diverse cell biological applications.

Taxonomy & Function

Primary hierarchy

Technique Branch

Method: A concrete computational method used to design, rank, or analyze an engineered system.

Mechanisms

No mechanism tags yet.

Target processes

No target processes tagged yet.

Input: Chemical

Implementation Constraints

The evidence states that mathematical modeling was used together with live-cell imaging and for rational design of synthetic gene circuits. No further implementation details are provided regarding equations, training data, simulation platforms, or integration with specific experimental workflows.

The supplied evidence does not report specific model formalisms, predictive accuracy, software frameworks, or benchmarking results. It also does not define the chemical inputs, parameterization strategy, or whether the cited applications were experimentally validated through the modeling itself.

Validation

Cell-freeBacteriaMammalianMouseHumanTherapeuticIndep. Replication

Supporting Sources

Ranked Claims

Claim 1application scopesupports2021Source 1needs review

The findings provide tools that allow greater control of subcellular protein localization across diverse cell biological applications.

Our findings highlight key sources of imprecision within light-inducible dimer systems and provide tools that allow greater control of subcellular protein localization across diverse cell biological applications.
Claim 2application scopesupports2021Source 1needs review

The findings provide tools that allow greater control of subcellular protein localization across diverse cell biological applications.

Our findings highlight key sources of imprecision within light-inducible dimer systems and provide tools that allow greater control of subcellular protein localization across diverse cell biological applications.
Claim 3application scopesupports2021Source 1needs review

The findings provide tools that allow greater control of subcellular protein localization across diverse cell biological applications.

Our findings highlight key sources of imprecision within light-inducible dimer systems and provide tools that allow greater control of subcellular protein localization across diverse cell biological applications.
Claim 4application scopesupports2021Source 1needs review

The findings provide tools that allow greater control of subcellular protein localization across diverse cell biological applications.

Our findings highlight key sources of imprecision within light-inducible dimer systems and provide tools that allow greater control of subcellular protein localization across diverse cell biological applications.
Claim 5application scopesupports2021Source 1needs review

The findings provide tools that allow greater control of subcellular protein localization across diverse cell biological applications.

Our findings highlight key sources of imprecision within light-inducible dimer systems and provide tools that allow greater control of subcellular protein localization across diverse cell biological applications.
Claim 6application scopesupports2021Source 1needs review

The findings provide tools that allow greater control of subcellular protein localization across diverse cell biological applications.

Our findings highlight key sources of imprecision within light-inducible dimer systems and provide tools that allow greater control of subcellular protein localization across diverse cell biological applications.
Claim 7application scopesupports2021Source 1needs review

The findings provide tools that allow greater control of subcellular protein localization across diverse cell biological applications.

Our findings highlight key sources of imprecision within light-inducible dimer systems and provide tools that allow greater control of subcellular protein localization across diverse cell biological applications.
Claim 8biomedical applicationsupports2021Source 2needs review

These quantitative model systems are used to study drug resistance in microbes and to probe the spatial-temporal dimensions of cancer in mammalian cells.

Specifically, we demonstrate how these quantitative model systems are being used to study drug resistance in microbes and to probe the spatial–temporal dimensions of cancer in mammalian cells.
Claim 9biomedical applicationsupports2021Source 2needs review

These quantitative model systems are used to study drug resistance in microbes and to probe the spatial-temporal dimensions of cancer in mammalian cells.

Specifically, we demonstrate how these quantitative model systems are being used to study drug resistance in microbes and to probe the spatial–temporal dimensions of cancer in mammalian cells.
Claim 10biomedical applicationsupports2021Source 2needs review

These quantitative model systems are used to study drug resistance in microbes and to probe the spatial-temporal dimensions of cancer in mammalian cells.

Specifically, we demonstrate how these quantitative model systems are being used to study drug resistance in microbes and to probe the spatial–temporal dimensions of cancer in mammalian cells.
Claim 11biomedical applicationsupports2021Source 2needs review

These quantitative model systems are used to study drug resistance in microbes and to probe the spatial-temporal dimensions of cancer in mammalian cells.

Specifically, we demonstrate how these quantitative model systems are being used to study drug resistance in microbes and to probe the spatial–temporal dimensions of cancer in mammalian cells.
Claim 12biomedical applicationsupports2021Source 2needs review

These quantitative model systems are used to study drug resistance in microbes and to probe the spatial-temporal dimensions of cancer in mammalian cells.

Specifically, we demonstrate how these quantitative model systems are being used to study drug resistance in microbes and to probe the spatial–temporal dimensions of cancer in mammalian cells.
Claim 13biomedical applicationsupports2021Source 2needs review

These quantitative model systems are used to study drug resistance in microbes and to probe the spatial-temporal dimensions of cancer in mammalian cells.

Specifically, we demonstrate how these quantitative model systems are being used to study drug resistance in microbes and to probe the spatial–temporal dimensions of cancer in mammalian cells.
Claim 14biomedical applicationsupports2021Source 2needs review

These quantitative model systems are used to study drug resistance in microbes and to probe the spatial-temporal dimensions of cancer in mammalian cells.

Specifically, we demonstrate how these quantitative model systems are being used to study drug resistance in microbes and to probe the spatial–temporal dimensions of cancer in mammalian cells.
Claim 15capabilitysupports2021Source 1needs review

The iLID system enables selective recruitment of components to subcellular locations, including micron-scale regions of the plasma membrane.

These tools, including the improved Light-Inducible Dimer (iLID) system, offer the ability to selectively recruit components to subcellular locations, such as micron-scale regions of the plasma membrane.
Claim 16capabilitysupports2021Source 1needs review

The iLID system enables selective recruitment of components to subcellular locations, including micron-scale regions of the plasma membrane.

These tools, including the improved Light-Inducible Dimer (iLID) system, offer the ability to selectively recruit components to subcellular locations, such as micron-scale regions of the plasma membrane.
Claim 17capabilitysupports2021Source 1needs review

The iLID system enables selective recruitment of components to subcellular locations, including micron-scale regions of the plasma membrane.

These tools, including the improved Light-Inducible Dimer (iLID) system, offer the ability to selectively recruit components to subcellular locations, such as micron-scale regions of the plasma membrane.
Claim 18capabilitysupports2021Source 1needs review

The iLID system enables selective recruitment of components to subcellular locations, including micron-scale regions of the plasma membrane.

These tools, including the improved Light-Inducible Dimer (iLID) system, offer the ability to selectively recruit components to subcellular locations, such as micron-scale regions of the plasma membrane.
Claim 19capabilitysupports2021Source 1needs review

The iLID system enables selective recruitment of components to subcellular locations, including micron-scale regions of the plasma membrane.

These tools, including the improved Light-Inducible Dimer (iLID) system, offer the ability to selectively recruit components to subcellular locations, such as micron-scale regions of the plasma membrane.
Claim 20capabilitysupports2021Source 1needs review

The iLID system enables selective recruitment of components to subcellular locations, including micron-scale regions of the plasma membrane.

These tools, including the improved Light-Inducible Dimer (iLID) system, offer the ability to selectively recruit components to subcellular locations, such as micron-scale regions of the plasma membrane.
Claim 21capabilitysupports2021Source 1needs review

The iLID system enables selective recruitment of components to subcellular locations, including micron-scale regions of the plasma membrane.

These tools, including the improved Light-Inducible Dimer (iLID) system, offer the ability to selectively recruit components to subcellular locations, such as micron-scale regions of the plasma membrane.
Claim 22capabilitysupports2021Source 1needs review

The iLID system enables selective recruitment of components to subcellular locations, including micron-scale regions of the plasma membrane.

These tools, including the improved Light-Inducible Dimer (iLID) system, offer the ability to selectively recruit components to subcellular locations, such as micron-scale regions of the plasma membrane.
Claim 23capabilitysupports2021Source 1needs review

The iLID system enables selective recruitment of components to subcellular locations such as micron-scale regions of the plasma membrane.

the improved Light-Inducible Dimer (iLID) system, offer the ability to selectively recruit components to subcellular locations, such as micron-scale regions of the plasma membrane
Claim 24capabilitysupports2021Source 1needs review

The iLID system enables selective recruitment of components to subcellular locations such as micron-scale regions of the plasma membrane.

the improved Light-Inducible Dimer (iLID) system, offer the ability to selectively recruit components to subcellular locations, such as micron-scale regions of the plasma membrane
Claim 25capabilitysupports2021Source 1needs review

The iLID system enables selective recruitment of components to subcellular locations such as micron-scale regions of the plasma membrane.

the improved Light-Inducible Dimer (iLID) system, offer the ability to selectively recruit components to subcellular locations, such as micron-scale regions of the plasma membrane
Claim 26capabilitysupports2021Source 1needs review

The iLID system enables selective recruitment of components to subcellular locations such as micron-scale regions of the plasma membrane.

the improved Light-Inducible Dimer (iLID) system, offer the ability to selectively recruit components to subcellular locations, such as micron-scale regions of the plasma membrane
Claim 27capabilitysupports2021Source 1needs review

The iLID system enables selective recruitment of components to subcellular locations such as micron-scale regions of the plasma membrane.

the improved Light-Inducible Dimer (iLID) system, offer the ability to selectively recruit components to subcellular locations, such as micron-scale regions of the plasma membrane
Claim 28capabilitysupports2021Source 1needs review

The iLID system enables selective recruitment of components to subcellular locations such as micron-scale regions of the plasma membrane.

the improved Light-Inducible Dimer (iLID) system, offer the ability to selectively recruit components to subcellular locations, such as micron-scale regions of the plasma membrane
Claim 29capabilitysupports2021Source 1needs review

The iLID system enables selective recruitment of components to subcellular locations such as micron-scale regions of the plasma membrane.

the improved Light-Inducible Dimer (iLID) system, offer the ability to selectively recruit components to subcellular locations, such as micron-scale regions of the plasma membrane
Claim 30comparative performancesupports2021Source 1needs review

Compared with the commonly used C-terminal iLID fusion, fusion proteins with large N-terminal anchors show stronger local recruitment, slower diffusion of recruited components, efficient recruitment over wider gene expression ranges, and improved spatial control over signaling outputs.

Compared to the commonly used C-terminal iLID fusion, fusion proteins with large N-terminal anchors show stronger local recruitment, slower diffusion of recruited components, efficient recruitment over wider gene expression ranges, and improved spatial control over signaling outputs.
Claim 31comparative performancesupports2021Source 1needs review

Compared with the commonly used C-terminal iLID fusion, fusion proteins with large N-terminal anchors show stronger local recruitment, slower diffusion of recruited components, efficient recruitment over wider gene expression ranges, and improved spatial control over signaling outputs.

Compared to the commonly used C-terminal iLID fusion, fusion proteins with large N-terminal anchors show stronger local recruitment, slower diffusion of recruited components, efficient recruitment over wider gene expression ranges, and improved spatial control over signaling outputs.
Claim 32comparative performancesupports2021Source 1needs review

Compared with the commonly used C-terminal iLID fusion, fusion proteins with large N-terminal anchors show stronger local recruitment, slower diffusion of recruited components, efficient recruitment over wider gene expression ranges, and improved spatial control over signaling outputs.

Compared to the commonly used C-terminal iLID fusion, fusion proteins with large N-terminal anchors show stronger local recruitment, slower diffusion of recruited components, efficient recruitment over wider gene expression ranges, and improved spatial control over signaling outputs.
Claim 33comparative performancesupports2021Source 1needs review

Compared with the commonly used C-terminal iLID fusion, fusion proteins with large N-terminal anchors show stronger local recruitment, slower diffusion of recruited components, efficient recruitment over wider gene expression ranges, and improved spatial control over signaling outputs.

Compared to the commonly used C-terminal iLID fusion, fusion proteins with large N-terminal anchors show stronger local recruitment, slower diffusion of recruited components, efficient recruitment over wider gene expression ranges, and improved spatial control over signaling outputs.
Claim 34comparative performancesupports2021Source 1needs review

Compared with the commonly used C-terminal iLID fusion, fusion proteins with large N-terminal anchors show stronger local recruitment, slower diffusion of recruited components, efficient recruitment over wider gene expression ranges, and improved spatial control over signaling outputs.

Compared to the commonly used C-terminal iLID fusion, fusion proteins with large N-terminal anchors show stronger local recruitment, slower diffusion of recruited components, efficient recruitment over wider gene expression ranges, and improved spatial control over signaling outputs.
Claim 35comparative performancesupports2021Source 1needs review

Compared with the commonly used C-terminal iLID fusion, fusion proteins with large N-terminal anchors show stronger local recruitment, slower diffusion of recruited components, efficient recruitment over wider gene expression ranges, and improved spatial control over signaling outputs.

Compared to the commonly used C-terminal iLID fusion, fusion proteins with large N-terminal anchors show stronger local recruitment, slower diffusion of recruited components, efficient recruitment over wider gene expression ranges, and improved spatial control over signaling outputs.
Claim 36comparative performancesupports2021Source 1needs review

Compared with the commonly used C-terminal iLID fusion, fusion proteins with large N-terminal anchors show stronger local recruitment, slower diffusion of recruited components, efficient recruitment over wider gene expression ranges, and improved spatial control over signaling outputs.

Compared to the commonly used C-terminal iLID fusion, fusion proteins with large N-terminal anchors show stronger local recruitment, slower diffusion of recruited components, efficient recruitment over wider gene expression ranges, and improved spatial control over signaling outputs.
Claim 37comparative performancesupports2021Source 1needs review

Compared with the commonly used C-terminal iLID fusion, large N-terminal anchor fusions provide stronger local recruitment, slower diffusion of recruited components, efficient recruitment over wider gene expression ranges, and improved spatial control over signaling outputs.

Compared to the commonly used C-terminal iLID fusion, fusion proteins with large N-terminal anchors show stronger local recruitment, slower diffusion of recruited components, efficient recruitment over wider gene expression ranges, and improved spatial control over signaling outputs.
Claim 38comparative performancesupports2021Source 1needs review

Compared with the commonly used C-terminal iLID fusion, large N-terminal anchor fusions provide stronger local recruitment, slower diffusion of recruited components, efficient recruitment over wider gene expression ranges, and improved spatial control over signaling outputs.

Compared to the commonly used C-terminal iLID fusion, fusion proteins with large N-terminal anchors show stronger local recruitment, slower diffusion of recruited components, efficient recruitment over wider gene expression ranges, and improved spatial control over signaling outputs.
Claim 39comparative performancesupports2021Source 1needs review

Compared with the commonly used C-terminal iLID fusion, large N-terminal anchor fusions provide stronger local recruitment, slower diffusion of recruited components, efficient recruitment over wider gene expression ranges, and improved spatial control over signaling outputs.

Compared to the commonly used C-terminal iLID fusion, fusion proteins with large N-terminal anchors show stronger local recruitment, slower diffusion of recruited components, efficient recruitment over wider gene expression ranges, and improved spatial control over signaling outputs.
Claim 40comparative performancesupports2021Source 1needs review

Compared with the commonly used C-terminal iLID fusion, large N-terminal anchor fusions provide stronger local recruitment, slower diffusion of recruited components, efficient recruitment over wider gene expression ranges, and improved spatial control over signaling outputs.

Compared to the commonly used C-terminal iLID fusion, fusion proteins with large N-terminal anchors show stronger local recruitment, slower diffusion of recruited components, efficient recruitment over wider gene expression ranges, and improved spatial control over signaling outputs.
Claim 41comparative performancesupports2021Source 1needs review

Compared with the commonly used C-terminal iLID fusion, large N-terminal anchor fusions provide stronger local recruitment, slower diffusion of recruited components, efficient recruitment over wider gene expression ranges, and improved spatial control over signaling outputs.

Compared to the commonly used C-terminal iLID fusion, fusion proteins with large N-terminal anchors show stronger local recruitment, slower diffusion of recruited components, efficient recruitment over wider gene expression ranges, and improved spatial control over signaling outputs.
Claim 42comparative performancesupports2021Source 1needs review

Compared with the commonly used C-terminal iLID fusion, large N-terminal anchor fusions provide stronger local recruitment, slower diffusion of recruited components, efficient recruitment over wider gene expression ranges, and improved spatial control over signaling outputs.

Compared to the commonly used C-terminal iLID fusion, fusion proteins with large N-terminal anchors show stronger local recruitment, slower diffusion of recruited components, efficient recruitment over wider gene expression ranges, and improved spatial control over signaling outputs.
Claim 43comparative performancesupports2021Source 1needs review

Compared with the commonly used C-terminal iLID fusion, large N-terminal anchor fusions provide stronger local recruitment, slower diffusion of recruited components, efficient recruitment over wider gene expression ranges, and improved spatial control over signaling outputs.

Compared to the commonly used C-terminal iLID fusion, fusion proteins with large N-terminal anchors show stronger local recruitment, slower diffusion of recruited components, efficient recruitment over wider gene expression ranges, and improved spatial control over signaling outputs.
Claim 44comparative performancesupports2021Source 1needs review

Compared with the commonly used C-terminal iLID fusion, large N-terminal anchor fusions provide stronger local recruitment, slower diffusion of recruited components, efficient recruitment over wider gene expression ranges, and improved spatial control over signaling outputs.

Compared to the commonly used C-terminal iLID fusion, fusion proteins with large N-terminal anchors show stronger local recruitment, slower diffusion of recruited components, efficient recruitment over wider gene expression ranges, and improved spatial control over signaling outputs.
Claim 45design guidancesupports2021Source 2needs review

Mathematical modeling guides the rational design of synthetic gene circuits.

Mathematical modeling guides the rational design of synthetic gene circuits.
Claim 46design guidancesupports2021Source 2needs review

Mathematical modeling guides the rational design of synthetic gene circuits.

Mathematical modeling guides the rational design of synthetic gene circuits.
Claim 47design guidancesupports2021Source 2needs review

Mathematical modeling guides the rational design of synthetic gene circuits.

Mathematical modeling guides the rational design of synthetic gene circuits.
Claim 48design guidancesupports2021Source 2needs review

Mathematical modeling guides the rational design of synthetic gene circuits.

Mathematical modeling guides the rational design of synthetic gene circuits.
Claim 49design guidancesupports2021Source 2needs review

Mathematical modeling guides the rational design of synthetic gene circuits.

Mathematical modeling guides the rational design of synthetic gene circuits.
Claim 50design guidancesupports2021Source 2needs review

Mathematical modeling guides the rational design of synthetic gene circuits.

Mathematical modeling guides the rational design of synthetic gene circuits.
Claim 51design guidancesupports2021Source 2needs review

Mathematical modeling guides the rational design of synthetic gene circuits.

Mathematical modeling guides the rational design of synthetic gene circuits.
Claim 52design guidancesupports2021Source 1needs review

The study defines guidelines for component expression regimes for optimal recruitment for both cell-wide and subcellular recruitment strategies.

We also define guidelines for component expression regimes for optimal recruitment for both cell-wide and subcellular recruitment strategies.
Claim 53design guidancesupports2021Source 1needs review

The study defines guidelines for component expression regimes for optimal recruitment for both cell-wide and subcellular recruitment strategies.

We also define guidelines for component expression regimes for optimal recruitment for both cell-wide and subcellular recruitment strategies.
Claim 54design guidancesupports2021Source 1needs review

The study defines guidelines for component expression regimes for optimal recruitment for both cell-wide and subcellular recruitment strategies.

We also define guidelines for component expression regimes for optimal recruitment for both cell-wide and subcellular recruitment strategies.
Claim 55design guidancesupports2021Source 1needs review

The study defines guidelines for component expression regimes for optimal recruitment for both cell-wide and subcellular recruitment strategies.

We also define guidelines for component expression regimes for optimal recruitment for both cell-wide and subcellular recruitment strategies.
Claim 56design guidancesupports2021Source 1needs review

The study defines guidelines for component expression regimes for optimal recruitment for both cell-wide and subcellular recruitment strategies.

We also define guidelines for component expression regimes for optimal recruitment for both cell-wide and subcellular recruitment strategies.
Claim 57design guidancesupports2021Source 1needs review

The study defines guidelines for component expression regimes for optimal recruitment for both cell-wide and subcellular recruitment strategies.

We also define guidelines for component expression regimes for optimal recruitment for both cell-wide and subcellular recruitment strategies.
Claim 58design guidancesupports2021Source 1needs review

The study defines guidelines for component expression regimes for optimal recruitment for both cell-wide and subcellular recruitment strategies.

We also define guidelines for component expression regimes for optimal recruitment for both cell-wide and subcellular recruitment strategies.
Claim 59limitationsupports2021Source 1needs review

Consistent recruitment in optogenetic dimerization systems is limited by heterogeneous optogenetic component expression, and spatial precision is diminished by protein diffusion, especially over long time scales.

Currently, consistent recruitment is limited by heterogeneous optogenetic component expression, and spatial precision is diminished by protein diffusion, especially over long time scales.
Claim 60limitationsupports2021Source 1needs review

Consistent recruitment in optogenetic dimerization systems is limited by heterogeneous optogenetic component expression, and spatial precision is diminished by protein diffusion, especially over long time scales.

Currently, consistent recruitment is limited by heterogeneous optogenetic component expression, and spatial precision is diminished by protein diffusion, especially over long time scales.
Claim 61limitationsupports2021Source 1needs review

Consistent recruitment in optogenetic dimerization systems is limited by heterogeneous optogenetic component expression, and spatial precision is diminished by protein diffusion, especially over long time scales.

Currently, consistent recruitment is limited by heterogeneous optogenetic component expression, and spatial precision is diminished by protein diffusion, especially over long time scales.
Claim 62limitationsupports2021Source 1needs review

Consistent recruitment in optogenetic dimerization systems is limited by heterogeneous optogenetic component expression, and spatial precision is diminished by protein diffusion, especially over long time scales.

Currently, consistent recruitment is limited by heterogeneous optogenetic component expression, and spatial precision is diminished by protein diffusion, especially over long time scales.
Claim 63limitationsupports2021Source 1needs review

Consistent recruitment in optogenetic dimerization systems is limited by heterogeneous optogenetic component expression, and spatial precision is diminished by protein diffusion, especially over long time scales.

Currently, consistent recruitment is limited by heterogeneous optogenetic component expression, and spatial precision is diminished by protein diffusion, especially over long time scales.
Claim 64limitationsupports2021Source 1needs review

Consistent recruitment in optogenetic dimerization systems is limited by heterogeneous optogenetic component expression, and spatial precision is diminished by protein diffusion, especially over long time scales.

Currently, consistent recruitment is limited by heterogeneous optogenetic component expression, and spatial precision is diminished by protein diffusion, especially over long time scales.
Claim 65limitationsupports2021Source 1needs review

Consistent recruitment in optogenetic dimerization systems is limited by heterogeneous optogenetic component expression, and spatial precision is diminished by protein diffusion, especially over long time scales.

Currently, consistent recruitment is limited by heterogeneous optogenetic component expression, and spatial precision is diminished by protein diffusion, especially over long time scales.
Claim 66limitationsupports2021Source 1needs review

Within iLID-based recruitment, consistent recruitment is limited by heterogeneous optogenetic component expression and spatial precision is reduced by protein diffusion, especially over long time scales.

Currently, consistent recruitment is limited by heterogeneous optogenetic component expression, and spatial precision is diminished by protein diffusion, especially over long time scales.
Claim 67limitationsupports2021Source 1needs review

Within iLID-based recruitment, consistent recruitment is limited by heterogeneous optogenetic component expression and spatial precision is reduced by protein diffusion, especially over long time scales.

Currently, consistent recruitment is limited by heterogeneous optogenetic component expression, and spatial precision is diminished by protein diffusion, especially over long time scales.
Claim 68limitationsupports2021Source 1needs review

Within iLID-based recruitment, consistent recruitment is limited by heterogeneous optogenetic component expression and spatial precision is reduced by protein diffusion, especially over long time scales.

Currently, consistent recruitment is limited by heterogeneous optogenetic component expression, and spatial precision is diminished by protein diffusion, especially over long time scales.
Claim 69limitationsupports2021Source 1needs review

Within iLID-based recruitment, consistent recruitment is limited by heterogeneous optogenetic component expression and spatial precision is reduced by protein diffusion, especially over long time scales.

Currently, consistent recruitment is limited by heterogeneous optogenetic component expression, and spatial precision is diminished by protein diffusion, especially over long time scales.
Claim 70limitationsupports2021Source 1needs review

Within iLID-based recruitment, consistent recruitment is limited by heterogeneous optogenetic component expression and spatial precision is reduced by protein diffusion, especially over long time scales.

Currently, consistent recruitment is limited by heterogeneous optogenetic component expression, and spatial precision is diminished by protein diffusion, especially over long time scales.
Claim 71limitationsupports2021Source 1needs review

Within iLID-based recruitment, consistent recruitment is limited by heterogeneous optogenetic component expression and spatial precision is reduced by protein diffusion, especially over long time scales.

Currently, consistent recruitment is limited by heterogeneous optogenetic component expression, and spatial precision is diminished by protein diffusion, especially over long time scales.
Claim 72limitationsupports2021Source 1needs review

Within iLID-based recruitment, consistent recruitment is limited by heterogeneous optogenetic component expression and spatial precision is reduced by protein diffusion, especially over long time scales.

Currently, consistent recruitment is limited by heterogeneous optogenetic component expression, and spatial precision is diminished by protein diffusion, especially over long time scales.
Claim 73limitationsupports2021Source 1needs review

Within iLID-based recruitment, consistent recruitment is limited by heterogeneous optogenetic component expression and spatial precision is reduced by protein diffusion, especially over long time scales.

Currently, consistent recruitment is limited by heterogeneous optogenetic component expression, and spatial precision is diminished by protein diffusion, especially over long time scales.
Claim 74mechanistic effectsupports2021Source 1needs review

Anchoring strategy affects component expression and diffusion, which in turn impact recruitment strength, kinetics, and spatial dynamics in the iLID system.

we demonstrate that the anchoring strategy affects both component expression and diffusion, which in turn impact recruitment strength, kinetics, and spatial dynamics
Claim 75mechanistic effectsupports2021Source 1needs review

Anchoring strategy affects component expression and diffusion, which in turn impact recruitment strength, kinetics, and spatial dynamics in the iLID system.

we demonstrate that the anchoring strategy affects both component expression and diffusion, which in turn impact recruitment strength, kinetics, and spatial dynamics
Claim 76mechanistic effectsupports2021Source 1needs review

Anchoring strategy affects component expression and diffusion, which in turn impact recruitment strength, kinetics, and spatial dynamics in the iLID system.

we demonstrate that the anchoring strategy affects both component expression and diffusion, which in turn impact recruitment strength, kinetics, and spatial dynamics
Claim 77mechanistic effectsupports2021Source 1needs review

Anchoring strategy affects component expression and diffusion, which in turn impact recruitment strength, kinetics, and spatial dynamics in the iLID system.

we demonstrate that the anchoring strategy affects both component expression and diffusion, which in turn impact recruitment strength, kinetics, and spatial dynamics
Claim 78mechanistic effectsupports2021Source 1needs review

Anchoring strategy affects component expression and diffusion, which in turn impact recruitment strength, kinetics, and spatial dynamics in the iLID system.

we demonstrate that the anchoring strategy affects both component expression and diffusion, which in turn impact recruitment strength, kinetics, and spatial dynamics
Claim 79mechanistic effectsupports2021Source 1needs review

Anchoring strategy affects component expression and diffusion, which in turn impact recruitment strength, kinetics, and spatial dynamics in the iLID system.

we demonstrate that the anchoring strategy affects both component expression and diffusion, which in turn impact recruitment strength, kinetics, and spatial dynamics
Claim 80mechanistic effectsupports2021Source 1needs review

Anchoring strategy affects component expression and diffusion, which in turn impact recruitment strength, kinetics, and spatial dynamics in the iLID system.

we demonstrate that the anchoring strategy affects both component expression and diffusion, which in turn impact recruitment strength, kinetics, and spatial dynamics
Claim 81mechanistic effectsupports2021Source 1needs review

In the iLID system, anchoring strategy affects component expression and diffusion, which in turn impact recruitment strength, kinetics, and spatial dynamics.

Using live cell imaging and mathematical modeling, we demonstrate that the anchoring strategy affects both component expression and diffusion, which in turn impact recruitment strength, kinetics, and spatial dynamics.
Claim 82mechanistic effectsupports2021Source 1needs review

In the iLID system, anchoring strategy affects component expression and diffusion, which in turn impact recruitment strength, kinetics, and spatial dynamics.

Using live cell imaging and mathematical modeling, we demonstrate that the anchoring strategy affects both component expression and diffusion, which in turn impact recruitment strength, kinetics, and spatial dynamics.
Claim 83mechanistic effectsupports2021Source 1needs review

In the iLID system, anchoring strategy affects component expression and diffusion, which in turn impact recruitment strength, kinetics, and spatial dynamics.

Using live cell imaging and mathematical modeling, we demonstrate that the anchoring strategy affects both component expression and diffusion, which in turn impact recruitment strength, kinetics, and spatial dynamics.
Claim 84mechanistic effectsupports2021Source 1needs review

In the iLID system, anchoring strategy affects component expression and diffusion, which in turn impact recruitment strength, kinetics, and spatial dynamics.

Using live cell imaging and mathematical modeling, we demonstrate that the anchoring strategy affects both component expression and diffusion, which in turn impact recruitment strength, kinetics, and spatial dynamics.
Claim 85mechanistic effectsupports2021Source 1needs review

In the iLID system, anchoring strategy affects component expression and diffusion, which in turn impact recruitment strength, kinetics, and spatial dynamics.

Using live cell imaging and mathematical modeling, we demonstrate that the anchoring strategy affects both component expression and diffusion, which in turn impact recruitment strength, kinetics, and spatial dynamics.
Claim 86mechanistic effectsupports2021Source 1needs review

In the iLID system, anchoring strategy affects component expression and diffusion, which in turn impact recruitment strength, kinetics, and spatial dynamics.

Using live cell imaging and mathematical modeling, we demonstrate that the anchoring strategy affects both component expression and diffusion, which in turn impact recruitment strength, kinetics, and spatial dynamics.
Claim 87mechanistic effectsupports2021Source 1needs review

In the iLID system, anchoring strategy affects component expression and diffusion, which in turn impact recruitment strength, kinetics, and spatial dynamics.

Using live cell imaging and mathematical modeling, we demonstrate that the anchoring strategy affects both component expression and diffusion, which in turn impact recruitment strength, kinetics, and spatial dynamics.
Claim 88mechanistic effectsupports2021Source 1needs review

In the iLID system, anchoring strategy affects component expression and diffusion, which in turn impact recruitment strength, kinetics, and spatial dynamics.

Using live cell imaging and mathematical modeling, we demonstrate that the anchoring strategy affects both component expression and diffusion, which in turn impact recruitment strength, kinetics, and spatial dynamics.
Claim 89usage guidancesupports2021Source 1needs review

The study defines guidelines for component expression regimes that optimize recruitment for both cell-wide and subcellular recruitment strategies.

We also define guidelines for component expression regimes for optimal recruitment for both cell-wide and subcellular recruitment strategies.
Claim 90usage guidancesupports2021Source 1needs review

The study defines guidelines for component expression regimes that optimize recruitment for both cell-wide and subcellular recruitment strategies.

We also define guidelines for component expression regimes for optimal recruitment for both cell-wide and subcellular recruitment strategies.
Claim 91usage guidancesupports2021Source 1needs review

The study defines guidelines for component expression regimes that optimize recruitment for both cell-wide and subcellular recruitment strategies.

We also define guidelines for component expression regimes for optimal recruitment for both cell-wide and subcellular recruitment strategies.
Claim 92usage guidancesupports2021Source 1needs review

The study defines guidelines for component expression regimes that optimize recruitment for both cell-wide and subcellular recruitment strategies.

We also define guidelines for component expression regimes for optimal recruitment for both cell-wide and subcellular recruitment strategies.
Claim 93usage guidancesupports2021Source 1needs review

The study defines guidelines for component expression regimes that optimize recruitment for both cell-wide and subcellular recruitment strategies.

We also define guidelines for component expression regimes for optimal recruitment for both cell-wide and subcellular recruitment strategies.
Claim 94usage guidancesupports2021Source 1needs review

The study defines guidelines for component expression regimes that optimize recruitment for both cell-wide and subcellular recruitment strategies.

We also define guidelines for component expression regimes for optimal recruitment for both cell-wide and subcellular recruitment strategies.
Claim 95usage guidancesupports2021Source 1needs review

The study defines guidelines for component expression regimes that optimize recruitment for both cell-wide and subcellular recruitment strategies.

We also define guidelines for component expression regimes for optimal recruitment for both cell-wide and subcellular recruitment strategies.
Claim 96usage guidancesupports2021Source 1needs review

The study defines guidelines for component expression regimes that optimize recruitment for both cell-wide and subcellular recruitment strategies.

We also define guidelines for component expression regimes for optimal recruitment for both cell-wide and subcellular recruitment strategies.
Claim 97utilitysupports2021Source 2needs review

Mathematical models and synthetic gene circuits are powerful tools for developing novel treatments for drug-resistant infections and cancers.

Mathematical models and synthetic gene circuits are powerful tools to develop novel treatments for patients with drug-resistant infections and cancers.
Claim 98utilitysupports2021Source 2needs review

Mathematical models and synthetic gene circuits are powerful tools for developing novel treatments for drug-resistant infections and cancers.

Mathematical models and synthetic gene circuits are powerful tools to develop novel treatments for patients with drug-resistant infections and cancers.
Claim 99utilitysupports2021Source 2needs review

Mathematical models and synthetic gene circuits are powerful tools for developing novel treatments for drug-resistant infections and cancers.

Mathematical models and synthetic gene circuits are powerful tools to develop novel treatments for patients with drug-resistant infections and cancers.
Claim 100utilitysupports2021Source 2needs review

Mathematical models and synthetic gene circuits are powerful tools for developing novel treatments for drug-resistant infections and cancers.

Mathematical models and synthetic gene circuits are powerful tools to develop novel treatments for patients with drug-resistant infections and cancers.
Claim 101utilitysupports2021Source 2needs review

Mathematical models and synthetic gene circuits are powerful tools for developing novel treatments for drug-resistant infections and cancers.

Mathematical models and synthetic gene circuits are powerful tools to develop novel treatments for patients with drug-resistant infections and cancers.
Claim 102utilitysupports2021Source 2needs review

Mathematical models and synthetic gene circuits are powerful tools for developing novel treatments for drug-resistant infections and cancers.

Mathematical models and synthetic gene circuits are powerful tools to develop novel treatments for patients with drug-resistant infections and cancers.
Claim 103utilitysupports2021Source 2needs review

Mathematical models and synthetic gene circuits are powerful tools for developing novel treatments for drug-resistant infections and cancers.

Mathematical models and synthetic gene circuits are powerful tools to develop novel treatments for patients with drug-resistant infections and cancers.

Approval Evidence

2 sources3 linked approval claimsfirst-pass slug mathematical-modeling
Using live cell imaging and mathematical modeling

Source:

Mathematical modeling guides the rational design of synthetic gene circuits.

Source:

biomedical applicationsupports

These quantitative model systems are used to study drug resistance in microbes and to probe the spatial-temporal dimensions of cancer in mammalian cells.

Specifically, we demonstrate how these quantitative model systems are being used to study drug resistance in microbes and to probe the spatial–temporal dimensions of cancer in mammalian cells.

Source:

design guidancesupports

Mathematical modeling guides the rational design of synthetic gene circuits.

Mathematical modeling guides the rational design of synthetic gene circuits.

Source:

utilitysupports

Mathematical models and synthetic gene circuits are powerful tools for developing novel treatments for drug-resistant infections and cancers.

Mathematical models and synthetic gene circuits are powerful tools to develop novel treatments for patients with drug-resistant infections and cancers.

Source:

Comparisons

Source-backed strengths

A key strength supported by the evidence is its role in rational design of synthetic gene circuits. The literature also indicates that it can be combined with live-cell imaging and applied across both microbial and mammalian research contexts.

Source:

Compared to the commonly used C-terminal iLID fusion, fusion proteins with large N-terminal anchors show stronger local recruitment, slower diffusion of recruited components, efficient recruitment over wider gene expression ranges, and improved spatial control over signaling outputs.

Ranked Citations

  1. 1.
    StructuralSource 1ACS Synthetic Biology2021Claim 1Claim 2Claim 3

    Extracted from this source document.

  2. 2.
    StructuralSource 2IntechOpen eBooks2021Claim 8Claim 9Claim 10

    Extracted from this source document.