Toolkit/quantitative model

quantitative model

Computational Method·Research·Since 2013

Taxonomy: Technique Branch / Method. Workflows sit above the mechanism and technique branches rather than replacing them.

Summary

This quantitative model is a computational analysis component used in a 2013 study of multi-chromatic optogenetic control of mammalian gene expression and signaling. It was applied to determine critical system parameters for the reported light-responsive expression platform.

Usefulness & Problems

Why this is useful

The model is useful for system characterization because it supports identification of critical parameters in an engineered multi-wavelength gene control system. In the cited study, this analytical role accompanied a platform that enabled differential induction of up to three genes in mammalian cells with different light wavelengths.

Source:

The quantitative model was used to determine critical parameters of the reported system. The abstract presents it as an analytical component supporting system characterization.

Source:

determining critical system parameters

Problem solved

It helps solve the parameter-identification problem for a complex light-responsive mammalian gene expression system. The available evidence indicates that it was used to determine critical system parameters, but does not specify the exact model structure or parameter classes.

Source:

It helps identify critical system parameters for the engineered light-responsive expression system.

Source:

supports parameterization of the optogenetic expression system

Problem links

Our Immune System Can Uniquely Recognize Nearly Any Molecule but We Don’t Know the Recognition Code

Gap mapView gap

A quantitative modeling method could help infer parameters from experimental data and support predictive rule-building once recognition measurements exist. It is only a weak link because the summary does not specify immune recognition, binding models, or sequence-to-specificity prediction.

supports parameterization of the optogenetic expression system

Literature

It helps identify critical system parameters for the engineered light-responsive expression system.

Source:

It helps identify critical system parameters for the engineered light-responsive expression system.

Taxonomy & Function

Primary hierarchy

Technique Branch

Method: A concrete computational method used to design, rank, or analyze an engineered system.

Mechanisms

No mechanism tags yet.

Target processes

No target processes tagged yet.

Implementation Constraints

cofactor dependency: cofactor requirement unknownencoding mode: genetically encodedimplementation constraint: context specific validationoperating role: builderrole: system parameter determinationswitch architecture: split

Practical implementation details are not provided in the available evidence. The source does not specify required datasets, computational framework, parameter-estimation workflow, or how the model interfaces with the UVB-, blue-, and red-light-responsive gene control components.

The evidence is sparse and only states that a quantitative model was used to determine critical system parameters. There is no information on equations, inputs, software implementation, training or fitting procedures, or whether the model was validated independently of the reported study.

Validation

Cell-freeBacteriaMammalianMouseHumanTherapeuticIndep. Replication

Supporting Sources

Ranked Claims

Claim 1applicationsupports2013Source 1needs review

Combining the UVB-responsive system with blue and red light-inducible gene control technology enabled multi-chromatic multi-gene control and was applied to angiogenic signaling processes.

By combining this UVB-responsive system with blue and red light-inducible gene control technology, we demonstrate multi-chromatic multi-gene control by differentially expressing three genes in a single cell culture in mammalian cells, and we apply this system for the multi-chromatic control of angiogenic signaling processes.
Claim 2applicationsupports2013Source 1needs review

Combining the UVB-responsive system with blue and red light-inducible gene control technology enabled multi-chromatic multi-gene control and was applied to angiogenic signaling processes.

By combining this UVB-responsive system with blue and red light-inducible gene control technology, we demonstrate multi-chromatic multi-gene control by differentially expressing three genes in a single cell culture in mammalian cells, and we apply this system for the multi-chromatic control of angiogenic signaling processes.
Claim 3applicationsupports2013Source 1needs review

Combining the UVB-responsive system with blue and red light-inducible gene control technology enabled multi-chromatic multi-gene control and was applied to angiogenic signaling processes.

By combining this UVB-responsive system with blue and red light-inducible gene control technology, we demonstrate multi-chromatic multi-gene control by differentially expressing three genes in a single cell culture in mammalian cells, and we apply this system for the multi-chromatic control of angiogenic signaling processes.
Claim 4applicationsupports2013Source 1needs review

Combining the UVB-responsive system with blue and red light-inducible gene control technology enabled multi-chromatic multi-gene control and was applied to angiogenic signaling processes.

By combining this UVB-responsive system with blue and red light-inducible gene control technology, we demonstrate multi-chromatic multi-gene control by differentially expressing three genes in a single cell culture in mammalian cells, and we apply this system for the multi-chromatic control of angiogenic signaling processes.
Claim 5applicationsupports2013Source 1needs review

Combining the UVB-responsive system with blue and red light-inducible gene control technology enabled multi-chromatic multi-gene control and was applied to angiogenic signaling processes.

By combining this UVB-responsive system with blue and red light-inducible gene control technology, we demonstrate multi-chromatic multi-gene control by differentially expressing three genes in a single cell culture in mammalian cells, and we apply this system for the multi-chromatic control of angiogenic signaling processes.
Claim 6applicationsupports2013Source 1needs review

Combining the UVB-responsive system with blue and red light-inducible gene control technology enabled multi-chromatic multi-gene control and was applied to angiogenic signaling processes.

By combining this UVB-responsive system with blue and red light-inducible gene control technology, we demonstrate multi-chromatic multi-gene control by differentially expressing three genes in a single cell culture in mammalian cells, and we apply this system for the multi-chromatic control of angiogenic signaling processes.
Claim 7applicationsupports2013Source 1needs review

Combining the UVB-responsive system with blue and red light-inducible gene control technology enabled multi-chromatic multi-gene control and was applied to angiogenic signaling processes.

By combining this UVB-responsive system with blue and red light-inducible gene control technology, we demonstrate multi-chromatic multi-gene control by differentially expressing three genes in a single cell culture in mammalian cells, and we apply this system for the multi-chromatic control of angiogenic signaling processes.
Claim 8applicationsupports2013Source 1needs review

Combining the UVB-responsive system with blue and red light-inducible gene control technology enabled multi-chromatic multi-gene control and was applied to angiogenic signaling processes.

By combining this UVB-responsive system with blue and red light-inducible gene control technology, we demonstrate multi-chromatic multi-gene control by differentially expressing three genes in a single cell culture in mammalian cells, and we apply this system for the multi-chromatic control of angiogenic signaling processes.
Claim 9applicationsupports2013Source 1needs review

Combining the UVB-responsive system with blue and red light-inducible gene control technology enabled multi-chromatic multi-gene control and was applied to angiogenic signaling processes.

By combining this UVB-responsive system with blue and red light-inducible gene control technology, we demonstrate multi-chromatic multi-gene control by differentially expressing three genes in a single cell culture in mammalian cells, and we apply this system for the multi-chromatic control of angiogenic signaling processes.
Claim 10applicationsupports2013Source 1needs review

Combining the UVB-responsive system with blue and red light-inducible gene control technology enabled multi-chromatic multi-gene control and was applied to angiogenic signaling processes.

By combining this UVB-responsive system with blue and red light-inducible gene control technology, we demonstrate multi-chromatic multi-gene control by differentially expressing three genes in a single cell culture in mammalian cells, and we apply this system for the multi-chromatic control of angiogenic signaling processes.
Claim 11applicationsupports2013Source 1needs review

Combining the UVB-responsive system with blue and red light-inducible gene control technology enabled multi-chromatic multi-gene control and was applied to angiogenic signaling processes.

By combining this UVB-responsive system with blue and red light-inducible gene control technology, we demonstrate multi-chromatic multi-gene control by differentially expressing three genes in a single cell culture in mammalian cells, and we apply this system for the multi-chromatic control of angiogenic signaling processes.
Claim 12applicationsupports2013Source 1needs review

Combining the UVB-responsive system with blue and red light-inducible gene control technology enabled multi-chromatic multi-gene control and was applied to angiogenic signaling processes.

By combining this UVB-responsive system with blue and red light-inducible gene control technology, we demonstrate multi-chromatic multi-gene control by differentially expressing three genes in a single cell culture in mammalian cells, and we apply this system for the multi-chromatic control of angiogenic signaling processes.
Claim 13applicationsupports2013Source 1needs review

Combining the UVB-responsive system with blue and red light-inducible gene control technology enabled multi-chromatic multi-gene control and was applied to angiogenic signaling processes.

By combining this UVB-responsive system with blue and red light-inducible gene control technology, we demonstrate multi-chromatic multi-gene control by differentially expressing three genes in a single cell culture in mammalian cells, and we apply this system for the multi-chromatic control of angiogenic signaling processes.
Claim 14applicationsupports2013Source 1needs review

Combining the UVB-responsive system with blue and red light-inducible gene control technology enabled multi-chromatic multi-gene control and was applied to angiogenic signaling processes.

By combining this UVB-responsive system with blue and red light-inducible gene control technology, we demonstrate multi-chromatic multi-gene control by differentially expressing three genes in a single cell culture in mammalian cells, and we apply this system for the multi-chromatic control of angiogenic signaling processes.
Claim 15applicationsupports2013Source 1needs review

Combining the UVB-responsive system with blue and red light-inducible gene control technology enabled multi-chromatic multi-gene control and was applied to angiogenic signaling processes.

By combining this UVB-responsive system with blue and red light-inducible gene control technology, we demonstrate multi-chromatic multi-gene control by differentially expressing three genes in a single cell culture in mammalian cells, and we apply this system for the multi-chromatic control of angiogenic signaling processes.
Claim 16applicationsupports2013Source 1needs review

Combining the UVB-responsive system with blue and red light-inducible gene control technology enabled multi-chromatic multi-gene control and was applied to angiogenic signaling processes.

By combining this UVB-responsive system with blue and red light-inducible gene control technology, we demonstrate multi-chromatic multi-gene control by differentially expressing three genes in a single cell culture in mammalian cells, and we apply this system for the multi-chromatic control of angiogenic signaling processes.
Claim 17applicationsupports2013Source 1needs review

Combining the UVB-responsive system with blue and red light-inducible gene control technology enabled multi-chromatic multi-gene control and was applied to angiogenic signaling processes.

By combining this UVB-responsive system with blue and red light-inducible gene control technology, we demonstrate multi-chromatic multi-gene control by differentially expressing three genes in a single cell culture in mammalian cells, and we apply this system for the multi-chromatic control of angiogenic signaling processes.
Claim 18applicationsupports2013Source 1needs review

Combining the UVB-responsive system with blue and red light-inducible gene control technology enabled multi-chromatic multi-gene control and was applied to angiogenic signaling processes.

By combining this UVB-responsive system with blue and red light-inducible gene control technology, we demonstrate multi-chromatic multi-gene control by differentially expressing three genes in a single cell culture in mammalian cells, and we apply this system for the multi-chromatic control of angiogenic signaling processes.
Claim 19applicationsupports2013Source 1needs review

Combining the UVB-responsive system with blue and red light-inducible gene control technology enabled multi-chromatic multi-gene control and was applied to angiogenic signaling processes.

By combining this UVB-responsive system with blue and red light-inducible gene control technology, we demonstrate multi-chromatic multi-gene control by differentially expressing three genes in a single cell culture in mammalian cells, and we apply this system for the multi-chromatic control of angiogenic signaling processes.
Claim 20applicationsupports2013Source 1needs review

Combining the UVB-responsive system with blue and red light-inducible gene control technology enabled multi-chromatic multi-gene control and was applied to angiogenic signaling processes.

By combining this UVB-responsive system with blue and red light-inducible gene control technology, we demonstrate multi-chromatic multi-gene control by differentially expressing three genes in a single cell culture in mammalian cells, and we apply this system for the multi-chromatic control of angiogenic signaling processes.
Claim 21capabilitysupports2013Source 1needs review

The study demonstrates multi-chromatic expression control in mammalian cells by differentially inducing up to three genes in a single cell culture in response to different wavelengths of light.

we demonstrate for the first time multi-chromatic expression control in mammalian cells by differentially inducing up to three genes in a single cell culture in response to light of different wavelengths
genes differentially induced 3
Claim 22capabilitysupports2013Source 1needs review

The study demonstrates multi-chromatic expression control in mammalian cells by differentially inducing up to three genes in a single cell culture in response to different wavelengths of light.

we demonstrate for the first time multi-chromatic expression control in mammalian cells by differentially inducing up to three genes in a single cell culture in response to light of different wavelengths
genes differentially induced 3
Claim 23capabilitysupports2013Source 1needs review

The study demonstrates multi-chromatic expression control in mammalian cells by differentially inducing up to three genes in a single cell culture in response to different wavelengths of light.

we demonstrate for the first time multi-chromatic expression control in mammalian cells by differentially inducing up to three genes in a single cell culture in response to light of different wavelengths
genes differentially induced 3
Claim 24capabilitysupports2013Source 1needs review

The study demonstrates multi-chromatic expression control in mammalian cells by differentially inducing up to three genes in a single cell culture in response to different wavelengths of light.

we demonstrate for the first time multi-chromatic expression control in mammalian cells by differentially inducing up to three genes in a single cell culture in response to light of different wavelengths
genes differentially induced 3
Claim 25capabilitysupports2013Source 1needs review

The study demonstrates multi-chromatic expression control in mammalian cells by differentially inducing up to three genes in a single cell culture in response to different wavelengths of light.

we demonstrate for the first time multi-chromatic expression control in mammalian cells by differentially inducing up to three genes in a single cell culture in response to light of different wavelengths
genes differentially induced 3
Claim 26capabilitysupports2013Source 1needs review

The study demonstrates multi-chromatic expression control in mammalian cells by differentially inducing up to three genes in a single cell culture in response to different wavelengths of light.

we demonstrate for the first time multi-chromatic expression control in mammalian cells by differentially inducing up to three genes in a single cell culture in response to light of different wavelengths
genes differentially induced 3
Claim 27capabilitysupports2013Source 1needs review

The study demonstrates multi-chromatic expression control in mammalian cells by differentially inducing up to three genes in a single cell culture in response to different wavelengths of light.

we demonstrate for the first time multi-chromatic expression control in mammalian cells by differentially inducing up to three genes in a single cell culture in response to light of different wavelengths
genes differentially induced 3
Claim 28capabilitysupports2013Source 1needs review

The study demonstrates multi-chromatic expression control in mammalian cells by differentially inducing up to three genes in a single cell culture in response to different wavelengths of light.

we demonstrate for the first time multi-chromatic expression control in mammalian cells by differentially inducing up to three genes in a single cell culture in response to light of different wavelengths
genes differentially induced 3
Claim 29capabilitysupports2013Source 1needs review

The study demonstrates multi-chromatic expression control in mammalian cells by differentially inducing up to three genes in a single cell culture in response to different wavelengths of light.

we demonstrate for the first time multi-chromatic expression control in mammalian cells by differentially inducing up to three genes in a single cell culture in response to light of different wavelengths
genes differentially induced 3
Claim 30capabilitysupports2013Source 1needs review

The study demonstrates multi-chromatic expression control in mammalian cells by differentially inducing up to three genes in a single cell culture in response to different wavelengths of light.

we demonstrate for the first time multi-chromatic expression control in mammalian cells by differentially inducing up to three genes in a single cell culture in response to light of different wavelengths
genes differentially induced 3
Claim 31capabilitysupports2013Source 1needs review

The study demonstrates multi-chromatic expression control in mammalian cells by differentially inducing up to three genes in a single cell culture in response to different wavelengths of light.

we demonstrate for the first time multi-chromatic expression control in mammalian cells by differentially inducing up to three genes in a single cell culture in response to light of different wavelengths
genes differentially induced 3
Claim 32capabilitysupports2013Source 1needs review

The study demonstrates multi-chromatic expression control in mammalian cells by differentially inducing up to three genes in a single cell culture in response to different wavelengths of light.

we demonstrate for the first time multi-chromatic expression control in mammalian cells by differentially inducing up to three genes in a single cell culture in response to light of different wavelengths
genes differentially induced 3
Claim 33capabilitysupports2013Source 1needs review

The study demonstrates multi-chromatic expression control in mammalian cells by differentially inducing up to three genes in a single cell culture in response to different wavelengths of light.

we demonstrate for the first time multi-chromatic expression control in mammalian cells by differentially inducing up to three genes in a single cell culture in response to light of different wavelengths
genes differentially induced 3
Claim 34capabilitysupports2013Source 1needs review

The study demonstrates multi-chromatic expression control in mammalian cells by differentially inducing up to three genes in a single cell culture in response to different wavelengths of light.

we demonstrate for the first time multi-chromatic expression control in mammalian cells by differentially inducing up to three genes in a single cell culture in response to light of different wavelengths
genes differentially induced 3
Claim 35capabilitysupports2013Source 1needs review

The study demonstrates multi-chromatic expression control in mammalian cells by differentially inducing up to three genes in a single cell culture in response to different wavelengths of light.

we demonstrate for the first time multi-chromatic expression control in mammalian cells by differentially inducing up to three genes in a single cell culture in response to light of different wavelengths
genes differentially induced 3
Claim 36capabilitysupports2013Source 1needs review

The study demonstrates multi-chromatic expression control in mammalian cells by differentially inducing up to three genes in a single cell culture in response to different wavelengths of light.

we demonstrate for the first time multi-chromatic expression control in mammalian cells by differentially inducing up to three genes in a single cell culture in response to light of different wavelengths
genes differentially induced 3
Claim 37capabilitysupports2013Source 1needs review

The study demonstrates multi-chromatic expression control in mammalian cells by differentially inducing up to three genes in a single cell culture in response to different wavelengths of light.

we demonstrate for the first time multi-chromatic expression control in mammalian cells by differentially inducing up to three genes in a single cell culture in response to light of different wavelengths
genes differentially induced 3
Claim 38capabilitysupports2013Source 1needs review

The study demonstrates multi-chromatic expression control in mammalian cells by differentially inducing up to three genes in a single cell culture in response to different wavelengths of light.

we demonstrate for the first time multi-chromatic expression control in mammalian cells by differentially inducing up to three genes in a single cell culture in response to light of different wavelengths
genes differentially induced 3
Claim 39capabilitysupports2013Source 1needs review

The study demonstrates multi-chromatic expression control in mammalian cells by differentially inducing up to three genes in a single cell culture in response to different wavelengths of light.

we demonstrate for the first time multi-chromatic expression control in mammalian cells by differentially inducing up to three genes in a single cell culture in response to light of different wavelengths
genes differentially induced 3
Claim 40capabilitysupports2013Source 1needs review

The study demonstrates multi-chromatic expression control in mammalian cells by differentially inducing up to three genes in a single cell culture in response to different wavelengths of light.

we demonstrate for the first time multi-chromatic expression control in mammalian cells by differentially inducing up to three genes in a single cell culture in response to light of different wavelengths
genes differentially induced 3
Claim 41engineering resultsupports2013Source 1needs review

The authors developed a UVB-inducible expression system by designing a UVB-responsive split transcription factor based on UVR8 and the WD40 domain of COP1.

we developed an ultraviolet B (UVB)-inducible expression system by designing a UVB-responsive split transcription factor based on the Arabidopsis thaliana UVB receptor UVR8 and the WD40 domain of COP1
Claim 42engineering resultsupports2013Source 1needs review

The authors developed a UVB-inducible expression system by designing a UVB-responsive split transcription factor based on UVR8 and the WD40 domain of COP1.

we developed an ultraviolet B (UVB)-inducible expression system by designing a UVB-responsive split transcription factor based on the Arabidopsis thaliana UVB receptor UVR8 and the WD40 domain of COP1
Claim 43engineering resultsupports2013Source 1needs review

The authors developed a UVB-inducible expression system by designing a UVB-responsive split transcription factor based on UVR8 and the WD40 domain of COP1.

we developed an ultraviolet B (UVB)-inducible expression system by designing a UVB-responsive split transcription factor based on the Arabidopsis thaliana UVB receptor UVR8 and the WD40 domain of COP1
Claim 44engineering resultsupports2013Source 1needs review

The authors developed a UVB-inducible expression system by designing a UVB-responsive split transcription factor based on UVR8 and the WD40 domain of COP1.

we developed an ultraviolet B (UVB)-inducible expression system by designing a UVB-responsive split transcription factor based on the Arabidopsis thaliana UVB receptor UVR8 and the WD40 domain of COP1
Claim 45engineering resultsupports2013Source 1needs review

The authors developed a UVB-inducible expression system by designing a UVB-responsive split transcription factor based on UVR8 and the WD40 domain of COP1.

we developed an ultraviolet B (UVB)-inducible expression system by designing a UVB-responsive split transcription factor based on the Arabidopsis thaliana UVB receptor UVR8 and the WD40 domain of COP1
Claim 46engineering resultsupports2013Source 1needs review

The authors developed a UVB-inducible expression system by designing a UVB-responsive split transcription factor based on UVR8 and the WD40 domain of COP1.

we developed an ultraviolet B (UVB)-inducible expression system by designing a UVB-responsive split transcription factor based on the Arabidopsis thaliana UVB receptor UVR8 and the WD40 domain of COP1
Claim 47engineering resultsupports2013Source 1needs review

The authors developed a UVB-inducible expression system by designing a UVB-responsive split transcription factor based on UVR8 and the WD40 domain of COP1.

we developed an ultraviolet B (UVB)-inducible expression system by designing a UVB-responsive split transcription factor based on the Arabidopsis thaliana UVB receptor UVR8 and the WD40 domain of COP1
Claim 48engineering resultsupports2013Source 1needs review

The authors developed a UVB-inducible expression system by designing a UVB-responsive split transcription factor based on UVR8 and the WD40 domain of COP1.

we developed an ultraviolet B (UVB)-inducible expression system by designing a UVB-responsive split transcription factor based on the Arabidopsis thaliana UVB receptor UVR8 and the WD40 domain of COP1
Claim 49engineering resultsupports2013Source 1needs review

The authors developed a UVB-inducible expression system by designing a UVB-responsive split transcription factor based on UVR8 and the WD40 domain of COP1.

we developed an ultraviolet B (UVB)-inducible expression system by designing a UVB-responsive split transcription factor based on the Arabidopsis thaliana UVB receptor UVR8 and the WD40 domain of COP1
Claim 50engineering resultsupports2013Source 1needs review

The authors developed a UVB-inducible expression system by designing a UVB-responsive split transcription factor based on UVR8 and the WD40 domain of COP1.

we developed an ultraviolet B (UVB)-inducible expression system by designing a UVB-responsive split transcription factor based on the Arabidopsis thaliana UVB receptor UVR8 and the WD40 domain of COP1
Claim 51engineering resultsupports2013Source 1needs review

The authors developed a UVB-inducible expression system by designing a UVB-responsive split transcription factor based on UVR8 and the WD40 domain of COP1.

we developed an ultraviolet B (UVB)-inducible expression system by designing a UVB-responsive split transcription factor based on the Arabidopsis thaliana UVB receptor UVR8 and the WD40 domain of COP1
Claim 52engineering resultsupports2013Source 1needs review

The authors developed a UVB-inducible expression system by designing a UVB-responsive split transcription factor based on UVR8 and the WD40 domain of COP1.

we developed an ultraviolet B (UVB)-inducible expression system by designing a UVB-responsive split transcription factor based on the Arabidopsis thaliana UVB receptor UVR8 and the WD40 domain of COP1
Claim 53engineering resultsupports2013Source 1needs review

The authors developed a UVB-inducible expression system by designing a UVB-responsive split transcription factor based on UVR8 and the WD40 domain of COP1.

we developed an ultraviolet B (UVB)-inducible expression system by designing a UVB-responsive split transcription factor based on the Arabidopsis thaliana UVB receptor UVR8 and the WD40 domain of COP1
Claim 54engineering resultsupports2013Source 1needs review

The authors developed a UVB-inducible expression system by designing a UVB-responsive split transcription factor based on UVR8 and the WD40 domain of COP1.

we developed an ultraviolet B (UVB)-inducible expression system by designing a UVB-responsive split transcription factor based on the Arabidopsis thaliana UVB receptor UVR8 and the WD40 domain of COP1
Claim 55engineering resultsupports2013Source 1needs review

The authors developed a UVB-inducible expression system by designing a UVB-responsive split transcription factor based on UVR8 and the WD40 domain of COP1.

we developed an ultraviolet B (UVB)-inducible expression system by designing a UVB-responsive split transcription factor based on the Arabidopsis thaliana UVB receptor UVR8 and the WD40 domain of COP1
Claim 56engineering resultsupports2013Source 1needs review

The authors developed a UVB-inducible expression system by designing a UVB-responsive split transcription factor based on UVR8 and the WD40 domain of COP1.

we developed an ultraviolet B (UVB)-inducible expression system by designing a UVB-responsive split transcription factor based on the Arabidopsis thaliana UVB receptor UVR8 and the WD40 domain of COP1
Claim 57engineering resultsupports2013Source 1needs review

The authors developed a UVB-inducible expression system by designing a UVB-responsive split transcription factor based on UVR8 and the WD40 domain of COP1.

we developed an ultraviolet B (UVB)-inducible expression system by designing a UVB-responsive split transcription factor based on the Arabidopsis thaliana UVB receptor UVR8 and the WD40 domain of COP1
Claim 58engineering resultsupports2013Source 1needs review

The authors developed a UVB-inducible expression system by designing a UVB-responsive split transcription factor based on UVR8 and the WD40 domain of COP1.

we developed an ultraviolet B (UVB)-inducible expression system by designing a UVB-responsive split transcription factor based on the Arabidopsis thaliana UVB receptor UVR8 and the WD40 domain of COP1
Claim 59engineering resultsupports2013Source 1needs review

The authors developed a UVB-inducible expression system by designing a UVB-responsive split transcription factor based on UVR8 and the WD40 domain of COP1.

we developed an ultraviolet B (UVB)-inducible expression system by designing a UVB-responsive split transcription factor based on the Arabidopsis thaliana UVB receptor UVR8 and the WD40 domain of COP1
Claim 60engineering resultsupports2013Source 1needs review

The authors developed a UVB-inducible expression system by designing a UVB-responsive split transcription factor based on UVR8 and the WD40 domain of COP1.

we developed an ultraviolet B (UVB)-inducible expression system by designing a UVB-responsive split transcription factor based on the Arabidopsis thaliana UVB receptor UVR8 and the WD40 domain of COP1
Claim 61impact statementsupports2013Source 1needs review

This portfolio of optogenetic tools enables the design and implementation of synthetic biological networks with unmatched spatiotemporal precision for future research and biomedical applications.

This portfolio of optogenetic tools enables the design and implementation of synthetic biological networks showing unmatched spatiotemporal precision for future research and biomedical applications.
Claim 62impact statementsupports2013Source 1needs review

This portfolio of optogenetic tools enables the design and implementation of synthetic biological networks with unmatched spatiotemporal precision for future research and biomedical applications.

This portfolio of optogenetic tools enables the design and implementation of synthetic biological networks showing unmatched spatiotemporal precision for future research and biomedical applications.
Claim 63impact statementsupports2013Source 1needs review

This portfolio of optogenetic tools enables the design and implementation of synthetic biological networks with unmatched spatiotemporal precision for future research and biomedical applications.

This portfolio of optogenetic tools enables the design and implementation of synthetic biological networks showing unmatched spatiotemporal precision for future research and biomedical applications.
Claim 64impact statementsupports2013Source 1needs review

This portfolio of optogenetic tools enables the design and implementation of synthetic biological networks with unmatched spatiotemporal precision for future research and biomedical applications.

This portfolio of optogenetic tools enables the design and implementation of synthetic biological networks showing unmatched spatiotemporal precision for future research and biomedical applications.
Claim 65impact statementsupports2013Source 1needs review

This portfolio of optogenetic tools enables the design and implementation of synthetic biological networks with unmatched spatiotemporal precision for future research and biomedical applications.

This portfolio of optogenetic tools enables the design and implementation of synthetic biological networks showing unmatched spatiotemporal precision for future research and biomedical applications.
Claim 66impact statementsupports2013Source 1needs review

This portfolio of optogenetic tools enables the design and implementation of synthetic biological networks with unmatched spatiotemporal precision for future research and biomedical applications.

This portfolio of optogenetic tools enables the design and implementation of synthetic biological networks showing unmatched spatiotemporal precision for future research and biomedical applications.
Claim 67impact statementsupports2013Source 1needs review

This portfolio of optogenetic tools enables the design and implementation of synthetic biological networks with unmatched spatiotemporal precision for future research and biomedical applications.

This portfolio of optogenetic tools enables the design and implementation of synthetic biological networks showing unmatched spatiotemporal precision for future research and biomedical applications.
Claim 68impact statementsupports2013Source 1needs review

This portfolio of optogenetic tools enables the design and implementation of synthetic biological networks with unmatched spatiotemporal precision for future research and biomedical applications.

This portfolio of optogenetic tools enables the design and implementation of synthetic biological networks showing unmatched spatiotemporal precision for future research and biomedical applications.
Claim 69impact statementsupports2013Source 1needs review

This portfolio of optogenetic tools enables the design and implementation of synthetic biological networks with unmatched spatiotemporal precision for future research and biomedical applications.

This portfolio of optogenetic tools enables the design and implementation of synthetic biological networks showing unmatched spatiotemporal precision for future research and biomedical applications.
Claim 70impact statementsupports2013Source 1needs review

This portfolio of optogenetic tools enables the design and implementation of synthetic biological networks with unmatched spatiotemporal precision for future research and biomedical applications.

This portfolio of optogenetic tools enables the design and implementation of synthetic biological networks showing unmatched spatiotemporal precision for future research and biomedical applications.
Claim 71impact statementsupports2013Source 1needs review

This portfolio of optogenetic tools enables the design and implementation of synthetic biological networks with unmatched spatiotemporal precision for future research and biomedical applications.

This portfolio of optogenetic tools enables the design and implementation of synthetic biological networks showing unmatched spatiotemporal precision for future research and biomedical applications.
Claim 72impact statementsupports2013Source 1needs review

This portfolio of optogenetic tools enables the design and implementation of synthetic biological networks with unmatched spatiotemporal precision for future research and biomedical applications.

This portfolio of optogenetic tools enables the design and implementation of synthetic biological networks showing unmatched spatiotemporal precision for future research and biomedical applications.
Claim 73impact statementsupports2013Source 1needs review

This portfolio of optogenetic tools enables the design and implementation of synthetic biological networks with unmatched spatiotemporal precision for future research and biomedical applications.

This portfolio of optogenetic tools enables the design and implementation of synthetic biological networks showing unmatched spatiotemporal precision for future research and biomedical applications.
Claim 74impact statementsupports2013Source 1needs review

This portfolio of optogenetic tools enables the design and implementation of synthetic biological networks with unmatched spatiotemporal precision for future research and biomedical applications.

This portfolio of optogenetic tools enables the design and implementation of synthetic biological networks showing unmatched spatiotemporal precision for future research and biomedical applications.
Claim 75impact statementsupports2013Source 1needs review

This portfolio of optogenetic tools enables the design and implementation of synthetic biological networks with unmatched spatiotemporal precision for future research and biomedical applications.

This portfolio of optogenetic tools enables the design and implementation of synthetic biological networks showing unmatched spatiotemporal precision for future research and biomedical applications.
Claim 76impact statementsupports2013Source 1needs review

This portfolio of optogenetic tools enables the design and implementation of synthetic biological networks with unmatched spatiotemporal precision for future research and biomedical applications.

This portfolio of optogenetic tools enables the design and implementation of synthetic biological networks showing unmatched spatiotemporal precision for future research and biomedical applications.
Claim 77impact statementsupports2013Source 1needs review

This portfolio of optogenetic tools enables the design and implementation of synthetic biological networks with unmatched spatiotemporal precision for future research and biomedical applications.

This portfolio of optogenetic tools enables the design and implementation of synthetic biological networks showing unmatched spatiotemporal precision for future research and biomedical applications.
Claim 78impact statementsupports2013Source 1needs review

This portfolio of optogenetic tools enables the design and implementation of synthetic biological networks with unmatched spatiotemporal precision for future research and biomedical applications.

This portfolio of optogenetic tools enables the design and implementation of synthetic biological networks showing unmatched spatiotemporal precision for future research and biomedical applications.
Claim 79impact statementsupports2013Source 1needs review

This portfolio of optogenetic tools enables the design and implementation of synthetic biological networks with unmatched spatiotemporal precision for future research and biomedical applications.

This portfolio of optogenetic tools enables the design and implementation of synthetic biological networks showing unmatched spatiotemporal precision for future research and biomedical applications.
Claim 80impact statementsupports2013Source 1needs review

This portfolio of optogenetic tools enables the design and implementation of synthetic biological networks with unmatched spatiotemporal precision for future research and biomedical applications.

This portfolio of optogenetic tools enables the design and implementation of synthetic biological networks showing unmatched spatiotemporal precision for future research and biomedical applications.
Claim 81modeling resultsupports2013Source 1needs review

A quantitative model was used to determine critical system parameters.

Based on a quantitative model, we determined critical system parameters.
Claim 82modeling resultsupports2013Source 1needs review

A quantitative model was used to determine critical system parameters.

Based on a quantitative model, we determined critical system parameters.
Claim 83modeling resultsupports2013Source 1needs review

A quantitative model was used to determine critical system parameters.

Based on a quantitative model, we determined critical system parameters.
Claim 84modeling resultsupports2013Source 1needs review

A quantitative model was used to determine critical system parameters.

Based on a quantitative model, we determined critical system parameters.
Claim 85modeling resultsupports2013Source 1needs review

A quantitative model was used to determine critical system parameters.

Based on a quantitative model, we determined critical system parameters.
Claim 86modeling resultsupports2013Source 1needs review

A quantitative model was used to determine critical system parameters.

Based on a quantitative model, we determined critical system parameters.
Claim 87modeling resultsupports2013Source 1needs review

A quantitative model was used to determine critical system parameters.

Based on a quantitative model, we determined critical system parameters.
Claim 88modeling resultsupports2013Source 1needs review

A quantitative model was used to determine critical system parameters.

Based on a quantitative model, we determined critical system parameters.
Claim 89modeling resultsupports2013Source 1needs review

A quantitative model was used to determine critical system parameters.

Based on a quantitative model, we determined critical system parameters.
Claim 90modeling resultsupports2013Source 1needs review

A quantitative model was used to determine critical system parameters.

Based on a quantitative model, we determined critical system parameters.
Claim 91modeling resultsupports2013Source 1needs review

A quantitative model was used to determine critical system parameters.

Based on a quantitative model, we determined critical system parameters.
Claim 92modeling resultsupports2013Source 1needs review

A quantitative model was used to determine critical system parameters.

Based on a quantitative model, we determined critical system parameters.
Claim 93modeling resultsupports2013Source 1needs review

A quantitative model was used to determine critical system parameters.

Based on a quantitative model, we determined critical system parameters.
Claim 94modeling resultsupports2013Source 1needs review

A quantitative model was used to determine critical system parameters.

Based on a quantitative model, we determined critical system parameters.
Claim 95modeling resultsupports2013Source 1needs review

A quantitative model was used to determine critical system parameters.

Based on a quantitative model, we determined critical system parameters.
Claim 96modeling resultsupports2013Source 1needs review

A quantitative model was used to determine critical system parameters.

Based on a quantitative model, we determined critical system parameters.
Claim 97modeling resultsupports2013Source 1needs review

A quantitative model was used to determine critical system parameters.

Based on a quantitative model, we determined critical system parameters.
Claim 98modeling resultsupports2013Source 1needs review

A quantitative model was used to determine critical system parameters.

Based on a quantitative model, we determined critical system parameters.
Claim 99modeling resultsupports2013Source 1needs review

A quantitative model was used to determine critical system parameters.

Based on a quantitative model, we determined critical system parameters.
Claim 100modeling resultsupports2013Source 1needs review

A quantitative model was used to determine critical system parameters.

Based on a quantitative model, we determined critical system parameters.
Claim 101modeling resultsupports2013Source 1needs review

A quantitative model was used to determine critical system parameters.

Based on a quantitative model, we determined critical system parameters.
Claim 102modeling resultsupports2013Source 1needs review

A quantitative model was used to determine critical system parameters.

Based on a quantitative model, we determined critical system parameters.
Claim 103modeling resultsupports2013Source 1needs review

A quantitative model was used to determine critical system parameters.

Based on a quantitative model, we determined critical system parameters.
Claim 104modeling resultsupports2013Source 1needs review

A quantitative model was used to determine critical system parameters.

Based on a quantitative model, we determined critical system parameters.
Claim 105modeling resultsupports2013Source 1needs review

A quantitative model was used to determine critical system parameters.

Based on a quantitative model, we determined critical system parameters.
Claim 106modeling resultsupports2013Source 1needs review

A quantitative model was used to determine critical system parameters.

Based on a quantitative model, we determined critical system parameters.
Claim 107modeling resultsupports2013Source 1needs review

A quantitative model was used to determine critical system parameters.

Based on a quantitative model, we determined critical system parameters.
Claim 108modeling resultsupports2013Source 1needs review

A quantitative model was used to determine critical system parameters.

Based on a quantitative model, we determined critical system parameters.
Claim 109modeling resultsupports2013Source 1needs review

A quantitative model was used to determine critical system parameters.

Based on a quantitative model, we determined critical system parameters.
Claim 110performancesupports2013Source 1needs review

The UVB-inducible expression system enabled up to 800-fold UVB-induced gene expression in human, monkey, hamster, and mouse cells.

The system allowed high (up to 800-fold) UVB-induced gene expression in human, monkey, hamster and mouse cells.
UVB-induced gene expression fold induction 800 fold
Claim 111performancesupports2013Source 1needs review

The UVB-inducible expression system enabled up to 800-fold UVB-induced gene expression in human, monkey, hamster, and mouse cells.

The system allowed high (up to 800-fold) UVB-induced gene expression in human, monkey, hamster and mouse cells.
UVB-induced gene expression fold induction 800 fold
Claim 112performancesupports2013Source 1needs review

The UVB-inducible expression system enabled up to 800-fold UVB-induced gene expression in human, monkey, hamster, and mouse cells.

The system allowed high (up to 800-fold) UVB-induced gene expression in human, monkey, hamster and mouse cells.
UVB-induced gene expression fold induction 800 fold
Claim 113performancesupports2013Source 1needs review

The UVB-inducible expression system enabled up to 800-fold UVB-induced gene expression in human, monkey, hamster, and mouse cells.

The system allowed high (up to 800-fold) UVB-induced gene expression in human, monkey, hamster and mouse cells.
UVB-induced gene expression fold induction 800 fold
Claim 114performancesupports2013Source 1needs review

The UVB-inducible expression system enabled up to 800-fold UVB-induced gene expression in human, monkey, hamster, and mouse cells.

The system allowed high (up to 800-fold) UVB-induced gene expression in human, monkey, hamster and mouse cells.
UVB-induced gene expression fold induction 800 fold
Claim 115performancesupports2013Source 1needs review

The UVB-inducible expression system enabled up to 800-fold UVB-induced gene expression in human, monkey, hamster, and mouse cells.

The system allowed high (up to 800-fold) UVB-induced gene expression in human, monkey, hamster and mouse cells.
UVB-induced gene expression fold induction 800 fold
Claim 116performancesupports2013Source 1needs review

The UVB-inducible expression system enabled up to 800-fold UVB-induced gene expression in human, monkey, hamster, and mouse cells.

The system allowed high (up to 800-fold) UVB-induced gene expression in human, monkey, hamster and mouse cells.
UVB-induced gene expression fold induction 800 fold
Claim 117performancesupports2013Source 1needs review

The UVB-inducible expression system enabled up to 800-fold UVB-induced gene expression in human, monkey, hamster, and mouse cells.

The system allowed high (up to 800-fold) UVB-induced gene expression in human, monkey, hamster and mouse cells.
UVB-induced gene expression fold induction 800 fold
Claim 118performancesupports2013Source 1needs review

The UVB-inducible expression system enabled up to 800-fold UVB-induced gene expression in human, monkey, hamster, and mouse cells.

The system allowed high (up to 800-fold) UVB-induced gene expression in human, monkey, hamster and mouse cells.
UVB-induced gene expression fold induction 800 fold
Claim 119performancesupports2013Source 1needs review

The UVB-inducible expression system enabled up to 800-fold UVB-induced gene expression in human, monkey, hamster, and mouse cells.

The system allowed high (up to 800-fold) UVB-induced gene expression in human, monkey, hamster and mouse cells.
UVB-induced gene expression fold induction 800 fold
Claim 120performancesupports2013Source 1needs review

The UVB-inducible expression system enabled up to 800-fold UVB-induced gene expression in human, monkey, hamster, and mouse cells.

The system allowed high (up to 800-fold) UVB-induced gene expression in human, monkey, hamster and mouse cells.
UVB-induced gene expression fold induction 800 fold
Claim 121performancesupports2013Source 1needs review

The UVB-inducible expression system enabled up to 800-fold UVB-induced gene expression in human, monkey, hamster, and mouse cells.

The system allowed high (up to 800-fold) UVB-induced gene expression in human, monkey, hamster and mouse cells.
UVB-induced gene expression fold induction 800 fold
Claim 122performancesupports2013Source 1needs review

The UVB-inducible expression system enabled up to 800-fold UVB-induced gene expression in human, monkey, hamster, and mouse cells.

The system allowed high (up to 800-fold) UVB-induced gene expression in human, monkey, hamster and mouse cells.
UVB-induced gene expression fold induction 800 fold
Claim 123performancesupports2013Source 1needs review

The UVB-inducible expression system enabled up to 800-fold UVB-induced gene expression in human, monkey, hamster, and mouse cells.

The system allowed high (up to 800-fold) UVB-induced gene expression in human, monkey, hamster and mouse cells.
UVB-induced gene expression fold induction 800 fold
Claim 124performancesupports2013Source 1needs review

The UVB-inducible expression system enabled up to 800-fold UVB-induced gene expression in human, monkey, hamster, and mouse cells.

The system allowed high (up to 800-fold) UVB-induced gene expression in human, monkey, hamster and mouse cells.
UVB-induced gene expression fold induction 800 fold
Claim 125performancesupports2013Source 1needs review

The UVB-inducible expression system enabled up to 800-fold UVB-induced gene expression in human, monkey, hamster, and mouse cells.

The system allowed high (up to 800-fold) UVB-induced gene expression in human, monkey, hamster and mouse cells.
UVB-induced gene expression fold induction 800 fold
Claim 126performancesupports2013Source 1needs review

The UVB-inducible expression system enabled up to 800-fold UVB-induced gene expression in human, monkey, hamster, and mouse cells.

The system allowed high (up to 800-fold) UVB-induced gene expression in human, monkey, hamster and mouse cells.
UVB-induced gene expression fold induction 800 fold
Claim 127performancesupports2013Source 1needs review

The UVB-inducible expression system enabled up to 800-fold UVB-induced gene expression in human, monkey, hamster, and mouse cells.

The system allowed high (up to 800-fold) UVB-induced gene expression in human, monkey, hamster and mouse cells.
UVB-induced gene expression fold induction 800 fold
Claim 128performancesupports2013Source 1needs review

The UVB-inducible expression system enabled up to 800-fold UVB-induced gene expression in human, monkey, hamster, and mouse cells.

The system allowed high (up to 800-fold) UVB-induced gene expression in human, monkey, hamster and mouse cells.
UVB-induced gene expression fold induction 800 fold
Claim 129performancesupports2013Source 1needs review

The UVB-inducible expression system enabled up to 800-fold UVB-induced gene expression in human, monkey, hamster, and mouse cells.

The system allowed high (up to 800-fold) UVB-induced gene expression in human, monkey, hamster and mouse cells.
UVB-induced gene expression fold induction 800 fold

Approval Evidence

1 source1 linked approval claimfirst-pass slug quantitative-model
Based on a quantitative model, we determined critical system parameters.

Source:

modeling resultsupports

A quantitative model was used to determine critical system parameters.

Based on a quantitative model, we determined critical system parameters.

Source:

Comparisons

Source-backed strengths

A clear strength is that the model was directly used in the context of an experimentally demonstrated multi-chromatic mammalian expression system. The evidence supports its utility for extracting critical system parameters, but does not report predictive accuracy, generalizability, or benchmarking.

Source:

we developed an ultraviolet B (UVB)-inducible expression system by designing a UVB-responsive split transcription factor based on the Arabidopsis thaliana UVB receptor UVR8 and the WD40 domain of COP1

Source:

The system allowed high (up to 800-fold) UVB-induced gene expression in human, monkey, hamster and mouse cells.

quantitative model and free-energy calculations address a similar problem space.

Shared frame: same top-level item type

Compared with mathematical model

quantitative model and mathematical model address a similar problem space.

Shared frame: same top-level item type

Strengths here: looks easier to implement in practice.

Compared with SwiftLib

quantitative model and SwiftLib address a similar problem space.

Shared frame: same top-level item type

Ranked Citations

  1. 1.
    StructuralSource 1Nucleic Acids Research2013Claim 12Claim 10Claim 12

    Extracted from this source document.