Toolkit/stimulated depletion quenching

stimulated depletion quenching

Engineering Method·Research·Since 2018

Also known as: SDQ

Taxonomy: Technique Branch / Method. Workflows sit above the mechanism and technique branches rather than replacing them.

Summary

Stimulated depletion quenching (SDQ) is a nonlinear optical control method, described as similar to STED, for improving photoactivation selectivity in bidirectional photoswitches. It has been developed and implemented as a photoswitching strategy and applied to the Cph8 optogenetic switch to shift photoequilibrium beyond what is achievable with continuous-wave illumination.

Usefulness & Problems

Why this is useful

SDQ is useful for suppressing spectral cross talk during bidirectional optogenetic switching by increasing selectivity of the photoactivation step. Source literature states that this improved selectivity should translate into improved dynamic range across a broad variety of bidirectional switches.

Source:

Increased selectivity of the photoactivation step via nonlinear optical techniques should translate into an improved dynamic range for a broad variety of bidirectional switches.

Source:

SDQ is employed to enhance the control of Cph8, a photo-reversible phytochrome based optogenetic switch designed to control gene expression in E. Coli bacteria.

Source:

This approach is applied to the phytochrome Cph8 bidirectional optogenetic switch

Source:

Stimulated Depletion Quenching (SDQ), is used to overcome spectral cross-talk by exploiting the molecules' unique dynamic response to ultrashort laser pulses

Problem solved

SDQ addresses the problem that bidirectional photoswitches can have limited selectivity in one photoactivation direction, constraining attainable photoequilibrium under conventional continuous-wave light. The method is specifically presented as a way to mitigate spectral cross talk in optogenetic switching.

Source:

Increased selectivity of the photoactivation step via nonlinear optical techniques should translate into an improved dynamic range for a broad variety of bidirectional switches.

Source:

SDQ is employed to enhance the control of Cph8, a photo-reversible phytochrome based optogenetic switch designed to control gene expression in E. Coli bacteria.

Source:

This approach is applied to the phytochrome Cph8 bidirectional optogenetic switch

Source:

The major challenge is the multiplexed control of several optogenetic components in the presence of significant spectral cross talk.

Taxonomy & Function

Primary hierarchy

Technique Branch

Method: A concrete method used to build, optimize, or evolve an engineered system.

Target processes

recombination

Input: Light

Implementation Constraints

The method uses light as the input modality and is described as a nonlinear optical strategy similar to STED. The supplied evidence identifies application to the Cph8 bidirectional optogenetic switch, but does not provide construct design details, wavelengths, pulse parameters, or delivery requirements.

The supplied evidence is limited to theoretical analysis, simulations, and general claims of implementation, with no detailed quantitative performance metrics provided here. Evidence for broad applicability is presented as an expectation or proposal rather than extensive cross-system experimental validation in the supplied record.

Validation

Cell-freeBacteriaMammalianMouseHumanTherapeuticIndep. Replication

Supporting Sources

Ranked Claims

Claim 1application scopesupports2021Source 1needs review

Increased selectivity of the photoactivation step via nonlinear optical techniques should translate into improved dynamic range for a broad variety of bidirectional switches.

Increased selectivity of the photoactivation step via nonlinear optical techniques should translate into an improved dynamic range for a broad variety of bidirectional switches.
Claim 2application scopesupports2021Source 1needs review

Increased selectivity of the photoactivation step via nonlinear optical techniques should translate into improved dynamic range for a broad variety of bidirectional switches.

Increased selectivity of the photoactivation step via nonlinear optical techniques should translate into an improved dynamic range for a broad variety of bidirectional switches.
Claim 3application scopesupports2021Source 1needs review

Increased selectivity of the photoactivation step via nonlinear optical techniques should translate into improved dynamic range for a broad variety of bidirectional switches.

Increased selectivity of the photoactivation step via nonlinear optical techniques should translate into an improved dynamic range for a broad variety of bidirectional switches.
Claim 4application scopesupports2021Source 1needs review

Increased selectivity of the photoactivation step via nonlinear optical techniques should translate into improved dynamic range for a broad variety of bidirectional switches.

Increased selectivity of the photoactivation step via nonlinear optical techniques should translate into an improved dynamic range for a broad variety of bidirectional switches.
Claim 5application scopesupports2021Source 1needs review

Increased selectivity of the photoactivation step via nonlinear optical techniques should translate into improved dynamic range for a broad variety of bidirectional switches.

Increased selectivity of the photoactivation step via nonlinear optical techniques should translate into an improved dynamic range for a broad variety of bidirectional switches.
Claim 6application scopesupports2021Source 1needs review

Increased selectivity of the photoactivation step via nonlinear optical techniques should translate into improved dynamic range for a broad variety of bidirectional switches.

Increased selectivity of the photoactivation step via nonlinear optical techniques should translate into an improved dynamic range for a broad variety of bidirectional switches.
Claim 7application scopesupports2021Source 1needs review

Increased selectivity of the photoactivation step via nonlinear optical techniques should translate into improved dynamic range for a broad variety of bidirectional switches.

Increased selectivity of the photoactivation step via nonlinear optical techniques should translate into an improved dynamic range for a broad variety of bidirectional switches.
Claim 8performance improvementsupports2021Source 1needs review

Stimulated depletion quenching enhances photoactivation selectivity on one side of the switch and shifts the photoequilibrium beyond what is achievable with CW light.

Using stimulated depletion quenching (SDQ), which is a nonlinear optical strategy similar to STED, we demonstrate enhanced photoactivation selectivity on one side of the switch, thus shifting the photoequilibrium beyond what is achievable with CW light.
Claim 9performance improvementsupports2021Source 1needs review

Stimulated depletion quenching enhances photoactivation selectivity on one side of the switch and shifts the photoequilibrium beyond what is achievable with CW light.

Using stimulated depletion quenching (SDQ), which is a nonlinear optical strategy similar to STED, we demonstrate enhanced photoactivation selectivity on one side of the switch, thus shifting the photoequilibrium beyond what is achievable with CW light.
Claim 10performance improvementsupports2021Source 1needs review

Stimulated depletion quenching enhances photoactivation selectivity on one side of the switch and shifts the photoequilibrium beyond what is achievable with CW light.

Using stimulated depletion quenching (SDQ), which is a nonlinear optical strategy similar to STED, we demonstrate enhanced photoactivation selectivity on one side of the switch, thus shifting the photoequilibrium beyond what is achievable with CW light.
Claim 11performance improvementsupports2021Source 1needs review

Stimulated depletion quenching enhances photoactivation selectivity on one side of the switch and shifts the photoequilibrium beyond what is achievable with CW light.

Using stimulated depletion quenching (SDQ), which is a nonlinear optical strategy similar to STED, we demonstrate enhanced photoactivation selectivity on one side of the switch, thus shifting the photoequilibrium beyond what is achievable with CW light.
Claim 12performance improvementsupports2021Source 1needs review

Stimulated depletion quenching enhances photoactivation selectivity on one side of the switch and shifts the photoequilibrium beyond what is achievable with CW light.

Using stimulated depletion quenching (SDQ), which is a nonlinear optical strategy similar to STED, we demonstrate enhanced photoactivation selectivity on one side of the switch, thus shifting the photoequilibrium beyond what is achievable with CW light.
Claim 13performance improvementsupports2021Source 1needs review

Stimulated depletion quenching enhances photoactivation selectivity on one side of the switch and shifts the photoequilibrium beyond what is achievable with CW light.

Using stimulated depletion quenching (SDQ), which is a nonlinear optical strategy similar to STED, we demonstrate enhanced photoactivation selectivity on one side of the switch, thus shifting the photoequilibrium beyond what is achievable with CW light.
Claim 14performance improvementsupports2021Source 1needs review

Stimulated depletion quenching enhances photoactivation selectivity on one side of the switch and shifts the photoequilibrium beyond what is achievable with CW light.

Using stimulated depletion quenching (SDQ), which is a nonlinear optical strategy similar to STED, we demonstrate enhanced photoactivation selectivity on one side of the switch, thus shifting the photoequilibrium beyond what is achievable with CW light.
Claim 15applicationsupports2018Source 2needs review

Stimulated Depletion Quenching is employed to enhance control of the Cph8 optogenetic switch.

SDQ is employed to enhance the control of Cph8, a photo-reversible phytochrome based optogenetic switch designed to control gene expression in E. Coli bacteria.
Claim 16applicationsupports2018Source 2needs review

Stimulated Depletion Quenching is employed to enhance control of the Cph8 optogenetic switch.

SDQ is employed to enhance the control of Cph8, a photo-reversible phytochrome based optogenetic switch designed to control gene expression in E. Coli bacteria.
Claim 17applicationsupports2018Source 2needs review

Stimulated Depletion Quenching is employed to enhance control of the Cph8 optogenetic switch.

SDQ is employed to enhance the control of Cph8, a photo-reversible phytochrome based optogenetic switch designed to control gene expression in E. Coli bacteria.
Claim 18applicationsupports2018Source 2needs review

Stimulated Depletion Quenching is employed to enhance control of the Cph8 optogenetic switch.

SDQ is employed to enhance the control of Cph8, a photo-reversible phytochrome based optogenetic switch designed to control gene expression in E. Coli bacteria.
Claim 19applicationsupports2018Source 2needs review

Stimulated Depletion Quenching is employed to enhance control of the Cph8 optogenetic switch.

SDQ is employed to enhance the control of Cph8, a photo-reversible phytochrome based optogenetic switch designed to control gene expression in E. Coli bacteria.
Claim 20applicationsupports2018Source 2needs review

Stimulated Depletion Quenching is employed to enhance control of the Cph8 optogenetic switch.

SDQ is employed to enhance the control of Cph8, a photo-reversible phytochrome based optogenetic switch designed to control gene expression in E. Coli bacteria.
Claim 21applicationsupports2018Source 2needs review

Stimulated Depletion Quenching is employed to enhance control of the Cph8 optogenetic switch.

SDQ is employed to enhance the control of Cph8, a photo-reversible phytochrome based optogenetic switch designed to control gene expression in E. Coli bacteria.
Claim 22applicationsupports2018Source 3needs review

Stimulated Depletion Quenching was applied to the Cph8 bidirectional optogenetic switch.

This approach is applied to the phytochrome Cph8 bidirectional optogenetic switch
Claim 23applicationsupports2018Source 3needs review

Stimulated Depletion Quenching was applied to the Cph8 bidirectional optogenetic switch.

This approach is applied to the phytochrome Cph8 bidirectional optogenetic switch
Claim 24applicationsupports2018Source 3needs review

Stimulated Depletion Quenching was applied to the Cph8 bidirectional optogenetic switch.

This approach is applied to the phytochrome Cph8 bidirectional optogenetic switch
Claim 25applicationsupports2018Source 3needs review

Stimulated Depletion Quenching was applied to the Cph8 bidirectional optogenetic switch.

This approach is applied to the phytochrome Cph8 bidirectional optogenetic switch
Claim 26applicationsupports2018Source 3needs review

Stimulated Depletion Quenching was applied to the Cph8 bidirectional optogenetic switch.

This approach is applied to the phytochrome Cph8 bidirectional optogenetic switch
Claim 27applicationsupports2018Source 3needs review

Stimulated Depletion Quenching was applied to the Cph8 bidirectional optogenetic switch.

This approach is applied to the phytochrome Cph8 bidirectional optogenetic switch
Claim 28applicationsupports2018Source 3needs review

Stimulated Depletion Quenching was applied to the Cph8 bidirectional optogenetic switch.

This approach is applied to the phytochrome Cph8 bidirectional optogenetic switch
Claim 29limitationsupports2018Source 2needs review

Linear photoswitching cannot fully convert Cph8 to the biologically inactive PFR state because spectral cross-talk drives reverse photoswitching back to the active PR state.

The Cph8 switch can not be fully converted to it's biologically inactive state ($P_{FR}$) by linear photos-witching, as spectral cross-talk causes a reverse photoswitching reaction to revert to it back to the active state ($P_{R}$).
Claim 30limitationsupports2018Source 2needs review

Linear photoswitching cannot fully convert Cph8 to the biologically inactive PFR state because spectral cross-talk drives reverse photoswitching back to the active PR state.

The Cph8 switch can not be fully converted to it's biologically inactive state ($P_{FR}$) by linear photos-witching, as spectral cross-talk causes a reverse photoswitching reaction to revert to it back to the active state ($P_{R}$).
Claim 31limitationsupports2018Source 2needs review

Linear photoswitching cannot fully convert Cph8 to the biologically inactive PFR state because spectral cross-talk drives reverse photoswitching back to the active PR state.

The Cph8 switch can not be fully converted to it's biologically inactive state ($P_{FR}$) by linear photos-witching, as spectral cross-talk causes a reverse photoswitching reaction to revert to it back to the active state ($P_{R}$).
Claim 32limitationsupports2018Source 2needs review

Linear photoswitching cannot fully convert Cph8 to the biologically inactive PFR state because spectral cross-talk drives reverse photoswitching back to the active PR state.

The Cph8 switch can not be fully converted to it's biologically inactive state ($P_{FR}$) by linear photos-witching, as spectral cross-talk causes a reverse photoswitching reaction to revert to it back to the active state ($P_{R}$).
Claim 33limitationsupports2018Source 2needs review

Linear photoswitching cannot fully convert Cph8 to the biologically inactive PFR state because spectral cross-talk drives reverse photoswitching back to the active PR state.

The Cph8 switch can not be fully converted to it's biologically inactive state ($P_{FR}$) by linear photos-witching, as spectral cross-talk causes a reverse photoswitching reaction to revert to it back to the active state ($P_{R}$).
Claim 34limitationsupports2018Source 2needs review

Linear photoswitching cannot fully convert Cph8 to the biologically inactive PFR state because spectral cross-talk drives reverse photoswitching back to the active PR state.

The Cph8 switch can not be fully converted to it's biologically inactive state ($P_{FR}$) by linear photos-witching, as spectral cross-talk causes a reverse photoswitching reaction to revert to it back to the active state ($P_{R}$).
Claim 35limitationsupports2018Source 2needs review

Linear photoswitching cannot fully convert Cph8 to the biologically inactive PFR state because spectral cross-talk drives reverse photoswitching back to the active PR state.

The Cph8 switch can not be fully converted to it's biologically inactive state ($P_{FR}$) by linear photos-witching, as spectral cross-talk causes a reverse photoswitching reaction to revert to it back to the active state ($P_{R}$).
Claim 36mechanismsupports2018Source 2needs review

Stimulated Depletion Quenching selectively halts the reverse photoswitching reaction of Cph8 while allowing the forward reaction to proceed.

SDQ selectively halts this reverse reaction while allowing the forward reaction to proceed.
Claim 37mechanismsupports2018Source 2needs review

Stimulated Depletion Quenching selectively halts the reverse photoswitching reaction of Cph8 while allowing the forward reaction to proceed.

SDQ selectively halts this reverse reaction while allowing the forward reaction to proceed.
Claim 38mechanismsupports2018Source 2needs review

Stimulated Depletion Quenching selectively halts the reverse photoswitching reaction of Cph8 while allowing the forward reaction to proceed.

SDQ selectively halts this reverse reaction while allowing the forward reaction to proceed.
Claim 39mechanismsupports2018Source 2needs review

Stimulated Depletion Quenching selectively halts the reverse photoswitching reaction of Cph8 while allowing the forward reaction to proceed.

SDQ selectively halts this reverse reaction while allowing the forward reaction to proceed.
Claim 40mechanismsupports2018Source 2needs review

Stimulated Depletion Quenching selectively halts the reverse photoswitching reaction of Cph8 while allowing the forward reaction to proceed.

SDQ selectively halts this reverse reaction while allowing the forward reaction to proceed.
Claim 41mechanismsupports2018Source 2needs review

Stimulated Depletion Quenching selectively halts the reverse photoswitching reaction of Cph8 while allowing the forward reaction to proceed.

SDQ selectively halts this reverse reaction while allowing the forward reaction to proceed.
Claim 42mechanismsupports2018Source 2needs review

Stimulated Depletion Quenching selectively halts the reverse photoswitching reaction of Cph8 while allowing the forward reaction to proceed.

SDQ selectively halts this reverse reaction while allowing the forward reaction to proceed.
Claim 43method capabilitysupports2018Source 2needs review

Stimulated Depletion Quenching is used to overcome spectral cross-talk in optogenetic photoswitching.

Stimulated Depletion Quenching (SDQ), is used to overcome spectral cross-talk by exploiting the molecules' unique dynamic response to ultrashort laser pulses
Claim 44method capabilitysupports2018Source 2needs review

Stimulated Depletion Quenching is used to overcome spectral cross-talk in optogenetic photoswitching.

Stimulated Depletion Quenching (SDQ), is used to overcome spectral cross-talk by exploiting the molecules' unique dynamic response to ultrashort laser pulses
Claim 45method capabilitysupports2018Source 2needs review

Stimulated Depletion Quenching is used to overcome spectral cross-talk in optogenetic photoswitching.

Stimulated Depletion Quenching (SDQ), is used to overcome spectral cross-talk by exploiting the molecules' unique dynamic response to ultrashort laser pulses
Claim 46method capabilitysupports2018Source 2needs review

Stimulated Depletion Quenching is used to overcome spectral cross-talk in optogenetic photoswitching.

Stimulated Depletion Quenching (SDQ), is used to overcome spectral cross-talk by exploiting the molecules' unique dynamic response to ultrashort laser pulses
Claim 47method capabilitysupports2018Source 2needs review

Stimulated Depletion Quenching is used to overcome spectral cross-talk in optogenetic photoswitching.

Stimulated Depletion Quenching (SDQ), is used to overcome spectral cross-talk by exploiting the molecules' unique dynamic response to ultrashort laser pulses
Claim 48method capabilitysupports2018Source 2needs review

Stimulated Depletion Quenching is used to overcome spectral cross-talk in optogenetic photoswitching.

Stimulated Depletion Quenching (SDQ), is used to overcome spectral cross-talk by exploiting the molecules' unique dynamic response to ultrashort laser pulses
Claim 49method capabilitysupports2018Source 2needs review

Stimulated Depletion Quenching is used to overcome spectral cross-talk in optogenetic photoswitching.

Stimulated Depletion Quenching (SDQ), is used to overcome spectral cross-talk by exploiting the molecules' unique dynamic response to ultrashort laser pulses
Claim 50method proposalsupports2018Source 3needs review

The paper proposes Stimulated Depletion Quenching as a new control approach.

We propose and demonstrate through simulations a new control approach of Stimulated Depletion Quenching.
Claim 51method proposalsupports2018Source 3needs review

The paper proposes Stimulated Depletion Quenching as a new control approach.

We propose and demonstrate through simulations a new control approach of Stimulated Depletion Quenching.
Claim 52method proposalsupports2018Source 3needs review

The paper proposes Stimulated Depletion Quenching as a new control approach.

We propose and demonstrate through simulations a new control approach of Stimulated Depletion Quenching.
Claim 53method proposalsupports2018Source 3needs review

The paper proposes Stimulated Depletion Quenching as a new control approach.

We propose and demonstrate through simulations a new control approach of Stimulated Depletion Quenching.
Claim 54method proposalsupports2018Source 3needs review

The paper proposes Stimulated Depletion Quenching as a new control approach.

We propose and demonstrate through simulations a new control approach of Stimulated Depletion Quenching.
Claim 55method proposalsupports2018Source 3needs review

The paper proposes Stimulated Depletion Quenching as a new control approach.

We propose and demonstrate through simulations a new control approach of Stimulated Depletion Quenching.
Claim 56method proposalsupports2018Source 3needs review

The paper proposes Stimulated Depletion Quenching as a new control approach.

We propose and demonstrate through simulations a new control approach of Stimulated Depletion Quenching.
Claim 57performance improvementsupports2018Source 3needs review

In simulations, applying Stimulated Depletion Quenching to the Cph8 bidirectional optogenetic switch showed significant improvement of dynamic range.

We propose and demonstrate through simulations a new control approach of Stimulated Depletion Quenching. This approach is applied to the phytochrome Cph8 bidirectional optogenetic switch, and the results show significant improvement of its dynamic range.
Claim 58performance improvementsupports2018Source 3needs review

In simulations, applying Stimulated Depletion Quenching to the Cph8 bidirectional optogenetic switch showed significant improvement of dynamic range.

We propose and demonstrate through simulations a new control approach of Stimulated Depletion Quenching. This approach is applied to the phytochrome Cph8 bidirectional optogenetic switch, and the results show significant improvement of its dynamic range.
Claim 59performance improvementsupports2018Source 3needs review

In simulations, applying Stimulated Depletion Quenching to the Cph8 bidirectional optogenetic switch showed significant improvement of dynamic range.

We propose and demonstrate through simulations a new control approach of Stimulated Depletion Quenching. This approach is applied to the phytochrome Cph8 bidirectional optogenetic switch, and the results show significant improvement of its dynamic range.
Claim 60performance improvementsupports2018Source 3needs review

In simulations, applying Stimulated Depletion Quenching to the Cph8 bidirectional optogenetic switch showed significant improvement of dynamic range.

We propose and demonstrate through simulations a new control approach of Stimulated Depletion Quenching. This approach is applied to the phytochrome Cph8 bidirectional optogenetic switch, and the results show significant improvement of its dynamic range.
Claim 61performance improvementsupports2018Source 3needs review

In simulations, applying Stimulated Depletion Quenching to the Cph8 bidirectional optogenetic switch showed significant improvement of dynamic range.

We propose and demonstrate through simulations a new control approach of Stimulated Depletion Quenching. This approach is applied to the phytochrome Cph8 bidirectional optogenetic switch, and the results show significant improvement of its dynamic range.
Claim 62performance improvementsupports2018Source 3needs review

In simulations, applying Stimulated Depletion Quenching to the Cph8 bidirectional optogenetic switch showed significant improvement of dynamic range.

We propose and demonstrate through simulations a new control approach of Stimulated Depletion Quenching. This approach is applied to the phytochrome Cph8 bidirectional optogenetic switch, and the results show significant improvement of its dynamic range.
Claim 63performance improvementsupports2018Source 3needs review

In simulations, applying Stimulated Depletion Quenching to the Cph8 bidirectional optogenetic switch showed significant improvement of dynamic range.

We propose and demonstrate through simulations a new control approach of Stimulated Depletion Quenching. This approach is applied to the phytochrome Cph8 bidirectional optogenetic switch, and the results show significant improvement of its dynamic range.
Claim 64problem statementsupports2018Source 3needs review

Multiplexed control of several optogenetic components is challenged by significant spectral cross talk.

The major challenge is the multiplexed control of several optogenetic components in the presence of significant spectral cross talk.
Claim 65problem statementsupports2018Source 3needs review

Multiplexed control of several optogenetic components is challenged by significant spectral cross talk.

The major challenge is the multiplexed control of several optogenetic components in the presence of significant spectral cross talk.
Claim 66problem statementsupports2018Source 3needs review

Multiplexed control of several optogenetic components is challenged by significant spectral cross talk.

The major challenge is the multiplexed control of several optogenetic components in the presence of significant spectral cross talk.
Claim 67problem statementsupports2018Source 3needs review

Multiplexed control of several optogenetic components is challenged by significant spectral cross talk.

The major challenge is the multiplexed control of several optogenetic components in the presence of significant spectral cross talk.
Claim 68problem statementsupports2018Source 3needs review

Multiplexed control of several optogenetic components is challenged by significant spectral cross talk.

The major challenge is the multiplexed control of several optogenetic components in the presence of significant spectral cross talk.
Claim 69problem statementsupports2018Source 3needs review

Multiplexed control of several optogenetic components is challenged by significant spectral cross talk.

The major challenge is the multiplexed control of several optogenetic components in the presence of significant spectral cross talk.
Claim 70problem statementsupports2018Source 3needs review

Multiplexed control of several optogenetic components is challenged by significant spectral cross talk.

The major challenge is the multiplexed control of several optogenetic components in the presence of significant spectral cross talk.
Claim 71problem statementsupports2018Source 2needs review

Spectral cross-talk hampers optogenetic switches by limiting independent control and restricting dynamic range.

the technique is hampered by spectral cross-talk: the broad absorption spectra of compatible biochemical chromophores limits the number of switches that can be independently controlled and restricts the dynamic range of each switch
Claim 72problem statementsupports2018Source 2needs review

Spectral cross-talk hampers optogenetic switches by limiting independent control and restricting dynamic range.

the technique is hampered by spectral cross-talk: the broad absorption spectra of compatible biochemical chromophores limits the number of switches that can be independently controlled and restricts the dynamic range of each switch
Claim 73problem statementsupports2018Source 2needs review

Spectral cross-talk hampers optogenetic switches by limiting independent control and restricting dynamic range.

the technique is hampered by spectral cross-talk: the broad absorption spectra of compatible biochemical chromophores limits the number of switches that can be independently controlled and restricts the dynamic range of each switch
Claim 74problem statementsupports2018Source 2needs review

Spectral cross-talk hampers optogenetic switches by limiting independent control and restricting dynamic range.

the technique is hampered by spectral cross-talk: the broad absorption spectra of compatible biochemical chromophores limits the number of switches that can be independently controlled and restricts the dynamic range of each switch
Claim 75problem statementsupports2018Source 2needs review

Spectral cross-talk hampers optogenetic switches by limiting independent control and restricting dynamic range.

the technique is hampered by spectral cross-talk: the broad absorption spectra of compatible biochemical chromophores limits the number of switches that can be independently controlled and restricts the dynamic range of each switch
Claim 76problem statementsupports2018Source 2needs review

Spectral cross-talk hampers optogenetic switches by limiting independent control and restricting dynamic range.

the technique is hampered by spectral cross-talk: the broad absorption spectra of compatible biochemical chromophores limits the number of switches that can be independently controlled and restricts the dynamic range of each switch
Claim 77problem statementsupports2018Source 2needs review

Spectral cross-talk hampers optogenetic switches by limiting independent control and restricting dynamic range.

the technique is hampered by spectral cross-talk: the broad absorption spectra of compatible biochemical chromophores limits the number of switches that can be independently controlled and restricts the dynamic range of each switch

Approval Evidence

3 sources9 linked approval claimsfirst-pass slug stimulated-depletion-quenching
Using stimulated depletion quenching (SDQ), which is a nonlinear optical strategy similar to STED, we demonstrate enhanced photoactivation selectivity

Source:

In the present work we develop and implement a non-linear optical photoswitching capability, Stimulated Depletion Quenching (SDQ)

Source:

We propose and demonstrate through simulations a new control approach of Stimulated Depletion Quenching.

Source:

application scopesupports

Increased selectivity of the photoactivation step via nonlinear optical techniques should translate into improved dynamic range for a broad variety of bidirectional switches.

Increased selectivity of the photoactivation step via nonlinear optical techniques should translate into an improved dynamic range for a broad variety of bidirectional switches.

Source:

performance improvementsupports

Stimulated depletion quenching enhances photoactivation selectivity on one side of the switch and shifts the photoequilibrium beyond what is achievable with CW light.

Using stimulated depletion quenching (SDQ), which is a nonlinear optical strategy similar to STED, we demonstrate enhanced photoactivation selectivity on one side of the switch, thus shifting the photoequilibrium beyond what is achievable with CW light.

Source:

applicationsupports

Stimulated Depletion Quenching is employed to enhance control of the Cph8 optogenetic switch.

SDQ is employed to enhance the control of Cph8, a photo-reversible phytochrome based optogenetic switch designed to control gene expression in E. Coli bacteria.

Source:

applicationsupports

Stimulated Depletion Quenching was applied to the Cph8 bidirectional optogenetic switch.

This approach is applied to the phytochrome Cph8 bidirectional optogenetic switch

Source:

mechanismsupports

Stimulated Depletion Quenching selectively halts the reverse photoswitching reaction of Cph8 while allowing the forward reaction to proceed.

SDQ selectively halts this reverse reaction while allowing the forward reaction to proceed.

Source:

method capabilitysupports

Stimulated Depletion Quenching is used to overcome spectral cross-talk in optogenetic photoswitching.

Stimulated Depletion Quenching (SDQ), is used to overcome spectral cross-talk by exploiting the molecules' unique dynamic response to ultrashort laser pulses

Source:

method proposalsupports

The paper proposes Stimulated Depletion Quenching as a new control approach.

We propose and demonstrate through simulations a new control approach of Stimulated Depletion Quenching.

Source:

performance improvementsupports

In simulations, applying Stimulated Depletion Quenching to the Cph8 bidirectional optogenetic switch showed significant improvement of dynamic range.

We propose and demonstrate through simulations a new control approach of Stimulated Depletion Quenching. This approach is applied to the phytochrome Cph8 bidirectional optogenetic switch, and the results show significant improvement of its dynamic range.

Source:

problem statementsupports

Multiplexed control of several optogenetic components is challenged by significant spectral cross talk.

The major challenge is the multiplexed control of several optogenetic components in the presence of significant spectral cross talk.

Source:

Comparisons

Source-backed strengths

The cited literature reports that SDQ enhances photoactivation selectivity on one side of the switch and shifts the photoequilibrium beyond the limit achievable with continuous-wave light. It was developed as a nonlinear optical photoswitching capability and analyzed or demonstrated in the context of the Cph8 bidirectional optogenetic switch.

Source:

Using stimulated depletion quenching (SDQ), which is a nonlinear optical strategy similar to STED, we demonstrate enhanced photoactivation selectivity on one side of the switch, thus shifting the photoequilibrium beyond what is achievable with CW light.

Source:

We propose and demonstrate through simulations a new control approach of Stimulated Depletion Quenching. This approach is applied to the phytochrome Cph8 bidirectional optogenetic switch, and the results show significant improvement of its dynamic range.

Ranked Citations

  1. 1.
    StructuralSource 1Applied Physics Letters2021Claim 1Claim 2Claim 3

    Extracted from this source document.

  2. 2.
    StructuralSource 2arXiv (Cornell University)2018Claim 15Claim 16Claim 17

    Extracted from this source document.

  3. 3.
    StructuralSource 3arXiv (Cornell University)2018Claim 22Claim 23Claim 24

    Extracted from this source document.