Toolkit/URMT

URMT

Taxonomy: Mechanism Branch / Architecture. Workflows sit above the mechanism and technique branches rather than replacing them.

Summary

URMT is a 980 nm near-infrared light-controlled multicomponent nanoplatform for tumor applications that combines a UCNP-based photodynamic nanosystem with an engineered enzyme-activatable antisense oligonucleotide. It is surface-functionalized with triphenylphosphonium (TPP) for mitochondrial targeting and enables coupled photodynamic action and enzyme-activated gene regulation.

Usefulness & Problems

Why this is useful

URMT is useful for achieving spatiotemporally controlled therapeutic activity by linking near-infrared light activation to mitochondrial photodynamic damage and subsequent gene regulation. The reported system is positioned for precise and specific gene regulation in targeted tumor treatment and for augmenting antitumor effects through combination action.

Problem solved

URMT addresses the problem of coordinating external light control with intracellular, enzyme-dependent activation of a gene-regulatory payload in tumors. Specifically, it couples 980 nm NIR-triggered ROS generation and APE1 relocalization to mitochondria with APE1-mediated cleavage of AP-site-containing oligonucleotides to release functional single strands.

Published Workflows

Objective: Develop a 980 nm NIR light-controlled nanosystem for combined tumor therapy that couples photodynamic mitochondrial damage with enzyme-activated gene regulation to improve spatiotemporal precision.

Why it works: The strategy is designed so that 980 nm NIR light triggers ROS generation from the UCNP-based photodynamic system, ROS induces APE1 translocation to mitochondria, and APE1 then cleaves AP-site-containing DNA to release functional strands for gene regulation. This couples externally controlled photodynamic activation with endogenous enzyme-responsive oligonucleotide activation.

NIR-triggered ROS generationAPE1 translocation from nucleus to mitochondriaAPE1 cleavage at AP sitesrelease of functional single strands for gene regulationmitochondrial damageupconversion nanoparticle-based photodynamic nanosystem designenzyme-activatable antisense oligonucleotide engineeringTPP surface functionalizationNIR light activation

Steps

  1. 1.
    Engineer an enzyme-activatable antisense oligonucleotideengineered oligonucleotide component within URMT

    Create an antisense component that can be activated by enzyme cleavage for downstream gene regulation.

    The activatable oligonucleotide provides the gene-regulation logic that is later coupled to the photodynamic nanosystem.

  2. 2.
    Combine the activatable antisense oligonucleotide with a UCNP-based photodynamic nanosystemassembled hybrid nanosystem

    Integrate light-triggered photodynamic function with the enzyme-activatable gene-regulation component.

    The photodynamic module is needed to generate ROS under NIR light, which is the upstream trigger for the enzyme-activation mechanism.

  3. 3.
    Surface functionalize the hybrid nanosystem with TPP for mitochondrial targetingmitochondria-targeted final nanoplatform

    Add mitochondrial targeting capability to the hybrid nanosystem.

    Mitochondrial targeting is added after hybrid system construction to localize photodynamic damage and align the platform with the intended mitochondrial mechanism.

  4. 4.
    Activate URMT with 980 nm NIR light to generate ROSlight-activated therapeutic nanosystem

    Trigger the photodynamic function that initiates the downstream activation cascade.

    ROS generation is the immediate upstream event that enables APE1 translocation and therefore must occur before enzyme-mediated strand release.

  5. 5.
    Use ROS-induced APE1 mitochondrial translocation and AP-site cleavage to release functional single strands for gene regulationenzyme-activated gene-regulation system

    Convert the photodynamic trigger into gene-regulatory output through endogenous APE1 cleavage.

    This step depends on prior ROS generation because the abstract states ROS induces APE1 translocation, which then enables AP-site cleavage and strand release.

Taxonomy & Function

Primary hierarchy

Mechanism Branch

Architecture: A composed arrangement of multiple parts that instantiates one or more mechanisms.

Techniques

No technique tags yet.

Target processes

localization

Input: Light

Implementation Constraints

URMT is constructed from a UCNP-based photodynamic nanosystem and an engineered antisense oligonucleotide containing AP sites that can be recognized and cleaved by APE1. The platform is surface-functionalized with TPP for mitochondrial targeting, and its activation requires 980 nm NIR illumination to generate ROS and induce APE1 translocation from the nucleus to mitochondria.

The supplied evidence is limited to a single 2024 study and does not provide detailed quantitative performance metrics, comparative benchmarking, or broad validation across models. The available claims also do not specify delivery efficiency, off-target effects, long-term safety, or the exact gene targets regulated by the released single strands.

Validation

Cell-freeBacteriaMammalianMouseHumanTherapeuticIndep. Replication

Supporting Sources

Ranked Claims

Claim 1compositionsupports2024Source 1needs review

URMT is constructed from an engineered enzyme-activatable antisense oligonucleotide combined with a UCNP-based photodynamic nanosystem and surface functionalized with TPP for mitochondrial targeting.

URMT is constructed by engineering an enzyme-activatable antisense oligonucleotide, which combined with an upconversion nanoparticle (UCNP)-based photodynamic nanosystem, followed by the surface functionalization of triphenylphosphine (TPP), a mitochondria-targeting ligand.
Claim 2compositionsupports2024Source 1needs review

URMT is constructed from an engineered enzyme-activatable antisense oligonucleotide combined with a UCNP-based photodynamic nanosystem and surface functionalized with TPP for mitochondrial targeting.

URMT is constructed by engineering an enzyme-activatable antisense oligonucleotide, which combined with an upconversion nanoparticle (UCNP)-based photodynamic nanosystem, followed by the surface functionalization of triphenylphosphine (TPP), a mitochondria-targeting ligand.
Claim 3compositionsupports2024Source 1needs review

URMT is constructed from an engineered enzyme-activatable antisense oligonucleotide combined with a UCNP-based photodynamic nanosystem and surface functionalized with TPP for mitochondrial targeting.

URMT is constructed by engineering an enzyme-activatable antisense oligonucleotide, which combined with an upconversion nanoparticle (UCNP)-based photodynamic nanosystem, followed by the surface functionalization of triphenylphosphine (TPP), a mitochondria-targeting ligand.
Claim 4compositionsupports2024Source 1needs review

URMT is constructed from an engineered enzyme-activatable antisense oligonucleotide combined with a UCNP-based photodynamic nanosystem and surface functionalized with TPP for mitochondrial targeting.

URMT is constructed by engineering an enzyme-activatable antisense oligonucleotide, which combined with an upconversion nanoparticle (UCNP)-based photodynamic nanosystem, followed by the surface functionalization of triphenylphosphine (TPP), a mitochondria-targeting ligand.
Claim 5compositionsupports2024Source 1needs review

URMT is constructed from an engineered enzyme-activatable antisense oligonucleotide combined with a UCNP-based photodynamic nanosystem and surface functionalized with TPP for mitochondrial targeting.

URMT is constructed by engineering an enzyme-activatable antisense oligonucleotide, which combined with an upconversion nanoparticle (UCNP)-based photodynamic nanosystem, followed by the surface functionalization of triphenylphosphine (TPP), a mitochondria-targeting ligand.
Claim 6mechanismsupports2024Source 1needs review

APE1 recognizes AP sites in DNA double strands and cleaves them to release functional single strands for gene regulation in the URMT strategy.

APE1 can recognize the basic apurinic/apyrimidinic (AP) sites in DNA double-strands and perform cleavage, thereby releasing the functional single-strands for gene regulation.
Claim 7mechanismsupports2024Source 1needs review

APE1 recognizes AP sites in DNA double strands and cleaves them to release functional single strands for gene regulation in the URMT strategy.

APE1 can recognize the basic apurinic/apyrimidinic (AP) sites in DNA double-strands and perform cleavage, thereby releasing the functional single-strands for gene regulation.
Claim 8mechanismsupports2024Source 1needs review

APE1 recognizes AP sites in DNA double strands and cleaves them to release functional single strands for gene regulation in the URMT strategy.

APE1 can recognize the basic apurinic/apyrimidinic (AP) sites in DNA double-strands and perform cleavage, thereby releasing the functional single-strands for gene regulation.
Claim 9mechanismsupports2024Source 1needs review

APE1 recognizes AP sites in DNA double strands and cleaves them to release functional single strands for gene regulation in the URMT strategy.

APE1 can recognize the basic apurinic/apyrimidinic (AP) sites in DNA double-strands and perform cleavage, thereby releasing the functional single-strands for gene regulation.
Claim 10mechanismsupports2024Source 1needs review

APE1 recognizes AP sites in DNA double strands and cleaves them to release functional single strands for gene regulation in the URMT strategy.

APE1 can recognize the basic apurinic/apyrimidinic (AP) sites in DNA double-strands and perform cleavage, thereby releasing the functional single-strands for gene regulation.
Claim 11mechanismsupports2024Source 1needs review

URMT generates ROS upon 980 nm NIR light activation, inducing APE1 translocation from the nucleus to mitochondria.

URMT allows for the 980 nm NIR light-activated generation of reactive oxygen species, which can induce the translocation of a DNA repair enzyme (namely apurinic/apyrimidinic endonuclease 1, APE1) from the nucleus to mitochondria.
Claim 12mechanismsupports2024Source 1needs review

URMT generates ROS upon 980 nm NIR light activation, inducing APE1 translocation from the nucleus to mitochondria.

URMT allows for the 980 nm NIR light-activated generation of reactive oxygen species, which can induce the translocation of a DNA repair enzyme (namely apurinic/apyrimidinic endonuclease 1, APE1) from the nucleus to mitochondria.
Claim 13mechanismsupports2024Source 1needs review

URMT generates ROS upon 980 nm NIR light activation, inducing APE1 translocation from the nucleus to mitochondria.

URMT allows for the 980 nm NIR light-activated generation of reactive oxygen species, which can induce the translocation of a DNA repair enzyme (namely apurinic/apyrimidinic endonuclease 1, APE1) from the nucleus to mitochondria.
Claim 14mechanismsupports2024Source 1needs review

URMT generates ROS upon 980 nm NIR light activation, inducing APE1 translocation from the nucleus to mitochondria.

URMT allows for the 980 nm NIR light-activated generation of reactive oxygen species, which can induce the translocation of a DNA repair enzyme (namely apurinic/apyrimidinic endonuclease 1, APE1) from the nucleus to mitochondria.
Claim 15mechanismsupports2024Source 1needs review

URMT generates ROS upon 980 nm NIR light activation, inducing APE1 translocation from the nucleus to mitochondria.

URMT allows for the 980 nm NIR light-activated generation of reactive oxygen species, which can induce the translocation of a DNA repair enzyme (namely apurinic/apyrimidinic endonuclease 1, APE1) from the nucleus to mitochondria.
Claim 16performance propertysupports2024Source 1needs review

The reported approach offers high spatiotemporal precision and has potential for precise and specific gene regulation for targeted tumor treatment.

Altogether, the approach reported in this study offers high spatiotemporal precision and shows the potential to achieve precise and specific gene regulation for targeted tumor treatment.
Claim 17performance propertysupports2024Source 1needs review

The reported approach offers high spatiotemporal precision and has potential for precise and specific gene regulation for targeted tumor treatment.

Altogether, the approach reported in this study offers high spatiotemporal precision and shows the potential to achieve precise and specific gene regulation for targeted tumor treatment.
Claim 18performance propertysupports2024Source 1needs review

The reported approach offers high spatiotemporal precision and has potential for precise and specific gene regulation for targeted tumor treatment.

Altogether, the approach reported in this study offers high spatiotemporal precision and shows the potential to achieve precise and specific gene regulation for targeted tumor treatment.
Claim 19performance propertysupports2024Source 1needs review

The reported approach offers high spatiotemporal precision and has potential for precise and specific gene regulation for targeted tumor treatment.

Altogether, the approach reported in this study offers high spatiotemporal precision and shows the potential to achieve precise and specific gene regulation for targeted tumor treatment.
Claim 20performance propertysupports2024Source 1needs review

The reported approach offers high spatiotemporal precision and has potential for precise and specific gene regulation for targeted tumor treatment.

Altogether, the approach reported in this study offers high spatiotemporal precision and shows the potential to achieve precise and specific gene regulation for targeted tumor treatment.
Claim 21therapeutic effectsupports2024Source 1needs review

The combined NIR light-controlled mitochondrial damage and enzyme-activated gene regulation strategy produces an augmented antitumor effect.

Overall, an augmented antitumor effect is observed due to NIR light-controlled mitochondrial damage and enzyme-activated gene regulation.
Claim 22therapeutic effectsupports2024Source 1needs review

The combined NIR light-controlled mitochondrial damage and enzyme-activated gene regulation strategy produces an augmented antitumor effect.

Overall, an augmented antitumor effect is observed due to NIR light-controlled mitochondrial damage and enzyme-activated gene regulation.
Claim 23therapeutic effectsupports2024Source 1needs review

The combined NIR light-controlled mitochondrial damage and enzyme-activated gene regulation strategy produces an augmented antitumor effect.

Overall, an augmented antitumor effect is observed due to NIR light-controlled mitochondrial damage and enzyme-activated gene regulation.
Claim 24therapeutic effectsupports2024Source 1needs review

The combined NIR light-controlled mitochondrial damage and enzyme-activated gene regulation strategy produces an augmented antitumor effect.

Overall, an augmented antitumor effect is observed due to NIR light-controlled mitochondrial damage and enzyme-activated gene regulation.
Claim 25therapeutic effectsupports2024Source 1needs review

The combined NIR light-controlled mitochondrial damage and enzyme-activated gene regulation strategy produces an augmented antitumor effect.

Overall, an augmented antitumor effect is observed due to NIR light-controlled mitochondrial damage and enzyme-activated gene regulation.
Claim 26tool developmentsupports2024Source 1needs review

URMT is a 980 nm NIR light-controlled nanoplatform developed for spatiotemporally controlled photodynamic therapy and enzyme-activated gene expression regulation in tumors.

Herein, a 980 nm near-infrared (NIR) light-controlled nanoplatform, namely URMT, is developed, which can allow spatiotemporally controlled photodynamic therapy and trigger the enzyme-activated gene expression regulation in tumors.
Claim 27tool developmentsupports2024Source 1needs review

URMT is a 980 nm NIR light-controlled nanoplatform developed for spatiotemporally controlled photodynamic therapy and enzyme-activated gene expression regulation in tumors.

Herein, a 980 nm near-infrared (NIR) light-controlled nanoplatform, namely URMT, is developed, which can allow spatiotemporally controlled photodynamic therapy and trigger the enzyme-activated gene expression regulation in tumors.
Claim 28tool developmentsupports2024Source 1needs review

URMT is a 980 nm NIR light-controlled nanoplatform developed for spatiotemporally controlled photodynamic therapy and enzyme-activated gene expression regulation in tumors.

Herein, a 980 nm near-infrared (NIR) light-controlled nanoplatform, namely URMT, is developed, which can allow spatiotemporally controlled photodynamic therapy and trigger the enzyme-activated gene expression regulation in tumors.
Claim 29tool developmentsupports2024Source 1needs review

URMT is a 980 nm NIR light-controlled nanoplatform developed for spatiotemporally controlled photodynamic therapy and enzyme-activated gene expression regulation in tumors.

Herein, a 980 nm near-infrared (NIR) light-controlled nanoplatform, namely URMT, is developed, which can allow spatiotemporally controlled photodynamic therapy and trigger the enzyme-activated gene expression regulation in tumors.
Claim 30tool developmentsupports2024Source 1needs review

URMT is a 980 nm NIR light-controlled nanoplatform developed for spatiotemporally controlled photodynamic therapy and enzyme-activated gene expression regulation in tumors.

Herein, a 980 nm near-infrared (NIR) light-controlled nanoplatform, namely URMT, is developed, which can allow spatiotemporally controlled photodynamic therapy and trigger the enzyme-activated gene expression regulation in tumors.

Approval Evidence

1 source6 linked approval claimsfirst-pass slug urmt
Herein, a 980 nm near-infrared (NIR) light-controlled nanoplatform, namely URMT, is developed, which can allow spatiotemporally controlled photodynamic therapy and trigger the enzyme-activated gene expression regulation in tumors.

Source:

compositionsupports

URMT is constructed from an engineered enzyme-activatable antisense oligonucleotide combined with a UCNP-based photodynamic nanosystem and surface functionalized with TPP for mitochondrial targeting.

URMT is constructed by engineering an enzyme-activatable antisense oligonucleotide, which combined with an upconversion nanoparticle (UCNP)-based photodynamic nanosystem, followed by the surface functionalization of triphenylphosphine (TPP), a mitochondria-targeting ligand.

Source:

mechanismsupports

APE1 recognizes AP sites in DNA double strands and cleaves them to release functional single strands for gene regulation in the URMT strategy.

APE1 can recognize the basic apurinic/apyrimidinic (AP) sites in DNA double-strands and perform cleavage, thereby releasing the functional single-strands for gene regulation.

Source:

mechanismsupports

URMT generates ROS upon 980 nm NIR light activation, inducing APE1 translocation from the nucleus to mitochondria.

URMT allows for the 980 nm NIR light-activated generation of reactive oxygen species, which can induce the translocation of a DNA repair enzyme (namely apurinic/apyrimidinic endonuclease 1, APE1) from the nucleus to mitochondria.

Source:

performance propertysupports

The reported approach offers high spatiotemporal precision and has potential for precise and specific gene regulation for targeted tumor treatment.

Altogether, the approach reported in this study offers high spatiotemporal precision and shows the potential to achieve precise and specific gene regulation for targeted tumor treatment.

Source:

therapeutic effectsupports

The combined NIR light-controlled mitochondrial damage and enzyme-activated gene regulation strategy produces an augmented antitumor effect.

Overall, an augmented antitumor effect is observed due to NIR light-controlled mitochondrial damage and enzyme-activated gene regulation.

Source:

tool developmentsupports

URMT is a 980 nm NIR light-controlled nanoplatform developed for spatiotemporally controlled photodynamic therapy and enzyme-activated gene expression regulation in tumors.

Herein, a 980 nm near-infrared (NIR) light-controlled nanoplatform, namely URMT, is developed, which can allow spatiotemporally controlled photodynamic therapy and trigger the enzyme-activated gene expression regulation in tumors.

Source:

Comparisons

Source-backed strengths

The reported approach provides high spatiotemporal precision because activation is gated by 980 nm NIR light and by enzyme-dependent oligonucleotide cleavage. It also produced an augmented antitumor effect through the combination of NIR light-controlled mitochondrial damage and enzyme-activated gene regulation.

Ranked Citations

  1. 1.
    StructuralSource 1Advanced Science2024Claim 1Claim 2Claim 3

    Seeded from load plan for claim c5. Extracted from this source document.