Toolkit Items

Browse the toolkit beneath workflows. The mechanism branch runs mechanism -> architecture -> component, while the technique branch runs from high-level approaches down to concrete methods.

13 items matching 1 filter

Mechanism Branch

Layer 1

Mechanisms

Top-level concepts: biophysical action modes such as heterodimerization, photocleavage, or RNA binding.

Layer 2

Architectures

Arrangements that realize or deploy mechanisms, including switches, construct patterns, and delivery strategies.

Layer 3

Components

Low-level parts and sequence-defined elements used inside architectures, including protein domains and RNA elements.

Technique Branch

Layer 1

Approaches

High-level engineering practices such as computational design, directed evolution, sequence verification, and functional assay.

Layer 2

Methods

Concrete methods used to design, build, verify, or characterize engineered systems.

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fluorescence imaging

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light-sheet microscopy

Assay Method

Light-sheet microscopy, also termed single plane illumination microscopy, is an in vivo fluorescence imaging method tailored to larval research and embryonic imaging. The supplied evidence indicates that it can capture the full course of embryonic development from egg to larva and has been coupled with optogenetic perturbation to study Wnt signaling during embryogenesis.

CFBacMamMusHumTxRep
Ev 37Rep 20Pr 71

simultaneous multi-plane confocal imaging approach

Assay Method

We have developed a novel approach for high-resolution confocal imaging across multiple tissue planes simultaneously. By combining confocal microscopy, piezo actuators, and optogenetic sensors, we can simultaneously capture images of dynamic fluorescence signals from various cell populations in different tissue layers (Z planes).

CFBacMamMusHumTxRep
Ev 28Rep 9Pr 59

head mounted fluorescent microscopes

Assay Method

Head mounted fluorescent microscopes are light-based imaging tools used in systems neuroscience to image neurons, neurocircuits, and their inputs and outputs. The supplied evidence places them within the recent expansion of functional imaging approaches but does not specify a particular instrument architecture or readout.

CFBacMamMusHumTxRep
Ev 20Rep 9Pr 59

two-photon intravital microscopy

Assay Method

Today, intravital microscopy with two-photon excitation microscopes (2P-IVM) is the mainstay technique for observing intercellular cross-talks in situ, unraveling cellular and molecular mechanisms in the context of their spatiotemporal dynamics.

CFBacMamMusHumTxRep
Ev 20Rep 9Pr 59

The ability to simultaneously image the spatiotemporal activity signatures from many neurons during unrestrained vertebrate behaviors has become possible through the development of miniaturized fluorescence microscopes, or miniscopes, sufficiently light to be carried by small animals such as bats, birds and rodents.

CFBacMamMusHumTxRep

polymer-encapsulated AIE fluorogen nanoparticles

Delivery Strategy

Of particular importance is the polymer encapsulated nanoparticles containing ... fluorogens with aggregation induced emission (AIE) characteristics as the core, which have shown significant advantages in terms of tunable brightness, superb photo- and physical stability, good biocompatibility, potential biodegradability and facile surface functionalization.

CFBacMamMusHumTxRep
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