Toolkit Items

Browse the toolkit beneath workflows. The mechanism branch runs mechanism -> architecture -> component, while the technique branch runs from high-level approaches down to concrete methods.

7 items matching 1 filter

Mechanism Branch

Layer 1

Mechanisms

Top-level concepts: biophysical action modes such as heterodimerization, photocleavage, or RNA binding.

Layer 2

Architectures

Arrangements that realize or deploy mechanisms, including switches, construct patterns, and delivery strategies.

Layer 3

Components

Low-level parts and sequence-defined elements used inside architectures, including protein domains and RNA elements.

Technique Branch

Layer 1

Approaches

High-level engineering practices such as computational design, directed evolution, sequence verification, and functional assay.

Layer 2

Methods

Concrete methods used to design, build, verify, or characterize engineered systems.

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fluorescent reporting

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six-helix bundle DNA origami-CRISPR complexes

Construct Pattern

we engineered six-helix bundle DNA origami-CRISPR complexes that achieved nucleolin-targeted genome editing in cervical cancer cells, coupling GFP-based diagnostics with therapeutic E7 oncogene disruption

CFBacMamMusHumTxRep
Ev 32Rep 9Pr 71

bicistronic expression cassette with GFP

Construct Pattern

The bicistronic expression cassette with GFP is a construct pattern used in Caenorhabditis elegans to co-express GFP as a reporter alongside conditional Channelrhodopsin-2 targeting components. In the cited study, GFP was included to identify the correct expression pattern during recombinase-based, intersectional single-neuron targeting.

CFBacMamMusHumTxRep
Ev 28Rep 9Pr 71

novel fluorescent biosensor for mitochondrial outer membrane rupture

Construct Pattern

In a recent study, we developed a novel fluorescent biosensor to directly visualize OMM rupture. This technique enables temporal and spatial characterization of OMM rupture and provides a powerful platform to dissect the underlying mechanism.

CFBacMamMusHumTxRep
Ev 28Rep 9Pr 71

reporter viruses

Construct Pattern

These reporters support real-time tracking of infection dynamics and host-virus interactions and power diagnostic platforms including reporter viruses, CRISPR-based assays, and nanotechnology-enhanced biosensors.

CFBacMamMusHumTxRep
Ev 20Rep 9Pr 71

red-shifted indicators

Construct Pattern

We also discuss the potential application of red-shifted indicators along with optogenetic tools to 2P-IVM.

CFBacMamMusHumTxRep
Ev 20Rep 9Pr 59
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