Toolkit Items

Browse the toolkit beneath workflows. The mechanism branch runs mechanism -> architecture -> component, while the technique branch runs from high-level approaches down to concrete methods.

25 items matching 1 filter

Mechanism Branch

Layer 1

Mechanisms

Top-level concepts: biophysical action modes such as heterodimerization, photocleavage, or RNA binding.

Layer 2

Architectures

Arrangements that realize or deploy mechanisms, including switches, construct patterns, and delivery strategies.

Layer 3

Components

Low-level parts and sequence-defined elements used inside architectures, including protein domains and RNA elements.

Technique Branch

Layer 1

Approaches

High-level engineering practices such as computational design, directed evolution, sequence verification, and functional assay.

Layer 2

Methods

Concrete methods used to design, build, verify, or characterize engineered systems.

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genome editing

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six-helix bundle DNA origami-CRISPR complexes

Construct Pattern

we engineered six-helix bundle DNA origami-CRISPR complexes that achieved nucleolin-targeted genome editing in cervical cancer cells, coupling GFP-based diagnostics with therapeutic E7 oncogene disruption

CFBacMamMusHumTxRep
Ev 32Rep 9Pr 71

genome editing with CRISPR

Assay Method

This review covers latest approaches, such as genome editing with CRISPR, targeting susceptibility genes

CFBacMamMusHumTxRep
Ev 26Rep 9Pr 71

precise cis-regulatory editing

Engineering Method

We present translational routes, sentinel epimarkers (bisulfite amplicons, CUT&Tag), haplotype-by-epigenotype prediction, and precise cis-regulatory editing to accelerate marker development, genomic prediction and the breeding of resilient soybean varieties with stable yields.

CFBacMamMusHumTxRep
Ev 26Rep 9Pr 71

CRISPR-Cas-mediated genome editing

Engineering Method

CRISPR-Cas-mediated genome editing is a programmable genome-editing approach discussed here in the context of bacterial systems. The cited review summarizes the main approaches for bacterial CRISPR-Cas editing and the difficulties associated with applying these systems in bacteria.

CFBacMamMusHumTxRep
Ev 20Rep 9Pr 71

engineered immune cells

Engineering Method
Since 2018genome editing

Engineered immune cells in this evidence context are immune cells rapidly modified using CRISPR-Cas9 for cancer immunotherapeutic applications. The supplied evidence supports CRISPR-Cas9-based generation of such cells but does not identify specific immune cell types, edited loci, or therapeutic payloads.

CFBacMamMusHumTxRep
Ev 20Rep 9Pr 71

ex vivo stem cell modification and re-transplantation

Delivery Strategy

Ex vivo stem cell modification and re-transplantation is a clinical delivery workflow in which a patient's own stem cells are isolated, genetically modified outside the body with CRISPR-based approaches, and returned to the same patient. The supplied evidence identifies this format as common among current clinical CRISPR trials.

CFBacMamMusHumTxRep
Ev 20Rep 9Pr 71

gene editing technology

Engineering Method

Gene editing technology is an engineering method used for animal model construction. The supplied evidence specifically states that it has been widely applied to nonhuman primate model generation in recent years.

CFBacMamMusHumTxRep
Ev 20Rep 9Pr 71

oncolytic viruses

Delivery Strategy
Since 2018genome editing

Oncolytic viruses are described in this evidence set as viral platforms that can be rapidly engineered with CRISPR-Cas9 for cancer immunotherapeutic applications. The cited role is as an editable delivery harness within cancer therapy development.

CFBacMamMusHumTxRep
Ev 20Rep 9Pr 71

CRISPR/Cas9 mediated genome editing

Engineering Method
Since 2016genome editing

CRISPR/Cas9 mediated genome editing is a genome engineering method used in the cited 2016 Scientific Reports study to investigate the functional role of human Interleukin-8 gene haplotypes. The supplied evidence supports its application in editing a specific human gene-haplotype context.

CFBacMamMusHumTxRep
Ev 28Rep 9Pr 59

duplex CRISPR/Cas9 technology

Engineering Method

Duplex CRISPR/Cas9 technology is a genome-editing method that uses two guide RNAs to target intronic sequences flanking an exon, enabling excision of the intervening exon by Cas9-mediated cleavage. In human U-2 OS osteosarcoma cells, it was applied to generate CRY1 knockout, CRY2 knockout, and CRY1/CRY2 double knockout cell models.

CFBacMamMusHumTxRep
Ev 28Rep 9Pr 59

CRISPR/Cas9 genome editing technique

Engineering Method

CRISPR/Cas9 is a genome editing technique used in the cited study to generate Cib1 and Cib2 knockout mice. In this evidence set, its demonstrated function is targeted gene disruption for mouse model production.

CFBacMamMusHumTxRep
Ev 24Rep 9Pr 59

CRISPR/Cas with long-acting slow-effective release antiretroviral therapy

Multi-Component Switch

Precision genome editing can be achieved by using clustered regularly interspaced short palindromic repeats (CRISPR)/CRISPR-associated protein (Cas) along with long-acting slow-effective release antiretroviral therapy.

CFBacMamMusHumTxRep
Ev 28Rep 9Pr 49

CRISPR-based editing strategies

Engineering Method

Looking ahead, continued refinements in vector design, CRISPR-based editing strategies, and delivery platforms are expected to expand the therapeutic reach of gene therapy beyond monogenic disorders.

CFBacMamMusHumTxRep

CRISPR-based isoform editing

Engineering Method

Future progress will require integrated multi-omics, fluxomics, and proximity-labeling approaches, combined with CRISPR-based isoform editing and promoter engineering.

CFBacMamMusHumTxRep

CRISPR/Cas9-based cytokine pathway editing

Engineering Method

Recent technological advances-such as clustered regularly interspaced short palindromic repeats (CRISPR)/CRISPR-associated protein 9 (CRISPR/Cas9)-based cytokine pathway editing...are reshaping adoptive immunotherapy.

CFBacMamMusHumTxRep

CRISPR/Cas9-based genome editing for CAR engineering

Engineering Method

further genetic engineering through CRISPR/Cas9- and TALEN-based approaches for genome editing will pave the way for successful clinical applications

CFBacMamMusHumTxRep

CRISPR/Cas9 gene editing

Engineering Method

Advances in molecular genetics have led to the development of targeted treatments, including gene replacement therapy, RNA-based therapies, and CRISPR/Cas9 gene editing

CFBacMamMusHumTxRep

CRISPR-Cas9 toolkits

Engineering Method

Recent advances in synthetic biology, particularly the development of CRISPR-Cas genome editing technology, offer a revolutionary approach to designing Lactobacillus strains with customized traits... we reviewed the research progress of CRISPR-Cas9 gene editing in Lactobacillus... CRISPR-Cas9 toolkits are expected to achieve directed evolution of strain performance.

CFBacMamMusHumTxRep

CRISPR/Cas-based genome editing

Engineering Method

This review focuses on the fundamental technologies that have enabled such advances, which include DNA synthesis, programmable gene circuits, and CRISPR/Cas-based genome editing.

CFBacMamMusHumTxRep

genome-editing therapeutic interventions targeting splicing

Engineering Method

These findings make the spliceosome an attractive new target for small-molecule, antisense, and genome-editing therapeutic interventions.

CFBacMamMusHumTxRep

TALEN-based genome editing for CAR engineering

Engineering Method

further genetic engineering through CRISPR/Cas9- and TALEN-based approaches for genome editing will pave the way for successful clinical applications

CFBacMamMusHumTxRep
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