Toolkit Items

Browse the toolkit beneath workflows. The mechanism branch runs mechanism -> architecture -> component, while the technique branch runs from high-level approaches down to concrete methods.

5 items matching 1 filter

Mechanism Branch

Layer 1

Mechanisms

Top-level concepts: biophysical action modes such as heterodimerization, photocleavage, or RNA binding.

Layer 2

Architectures

Arrangements that realize or deploy mechanisms, including switches, construct patterns, and delivery strategies.

Layer 3

Components

Low-level parts and sequence-defined elements used inside architectures, including protein domains and RNA elements.

Technique Branch

Layer 1

Approaches

High-level engineering practices such as computational design, directed evolution, sequence verification, and functional assay.

Layer 2

Methods

Concrete methods used to design, build, verify, or characterize engineered systems.

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homologous recombination

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LIGHT knockout by homologous recombination

Engineering Method

LIGHT knockout by homologous recombination is a mouse gene-targeting method used to generate LIGHT-/- mice. In the cited study, these knockout mice were used to test how LIGHT deficiency influences cardiac allograft survival and responses to cyclosporine A.

CFBacMamMusHumTxRep
Ev 43Rep 9Pr 59

gene replacement by homologous recombination

Engineering Method

Gene replacement by homologous recombination in Physcomitrella patens is a targeted genome engineering method for plant genome modification. The cited evidence states that this moss supports gene replacement at high frequency through homologous recombination.

CFBacMamMusHumTxRep
Ev 28Rep 9Pr 71

Cib1(-/-) mice

Engineering Method

Cib1(-/-) mice are a constitutive Mus musculus knockout line generated by homologous recombination in embryonic stem cells to disrupt the Cib1 gene. This in vivo genetic perturbation was used to define CIB1 function and revealed that CIB1 is essential for male spermatogenesis.

CFBacMamMusHumTxRep
Ev 36Rep 9Pr 59
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