Toolkit Items

Browse the toolkit beneath workflows. The mechanism branch runs mechanism -> architecture -> component, while the technique branch runs from high-level approaches down to concrete methods.

3 items matching 1 filter

Mechanism Branch

Layer 1

Mechanisms

Top-level concepts: biophysical action modes such as heterodimerization, photocleavage, or RNA binding.

Layer 2

Architectures

Arrangements that realize or deploy mechanisms, including switches, construct patterns, and delivery strategies.

Layer 3

Components

Low-level parts and sequence-defined elements used inside architectures, including protein domains and RNA elements.

Technique Branch

Layer 1

Approaches

High-level engineering practices such as computational design, directed evolution, sequence verification, and functional assay.

Layer 2

Methods

Concrete methods used to design, build, verify, or characterize engineered systems.

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light-dependent protein degradation

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Light-Activated Degron

Construct Pattern

The Light-Activated Degron is a light-responsive construct pattern used for optogenetic control of gene expression in combination with Cryptochrome 2. The available evidence indicates that it enables regulation of gene expression through light-dependent control of protein stability.

CFBacMamMusHumTxRep
Ev 28Rep 9Pr 59

CRY2 and LOV-fused degron light-responsive repression/degradation system

Multi-Component Switch

The CRY2 and LOV-fused degron light-responsive repression/degradation system is a multi-component optogenetic platform reported in mammalian cells that uses light to simultaneously block transcription and deplete protein levels. It is based on Arabidopsis cryptochrome 2 (CRY2), which interacts with CIB1 upon illumination, together with a LOV-fused degron configuration.

CFBacMamMusHumTxRep
Ev 28Rep 9Pr 37
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