Toolkit Items

Browse the toolkit beneath workflows. The mechanism branch runs mechanism -> architecture -> component, while the technique branch runs from high-level approaches down to concrete methods.

5 items matching 1 filter

Mechanism Branch

Layer 1

Mechanisms

Top-level concepts: biophysical action modes such as heterodimerization, photocleavage, or RNA binding.

Layer 2

Architectures

Arrangements that realize or deploy mechanisms, including switches, construct patterns, and delivery strategies.

Layer 3

Components

Low-level parts and sequence-defined elements used inside architectures, including protein domains and RNA elements.

Technique Branch

Layer 1

Approaches

High-level engineering practices such as computational design, directed evolution, sequence verification, and functional assay.

Layer 2

Methods

Concrete methods used to design, build, verify, or characterize engineered systems.

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light-induced dimerization

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TAEL is an engineered optogenetic transcription factor optimized for zebrafish in which blue light induces TAEL dimerization, binding to the C120 promoter element, and activation of downstream transcription. TAEL 2.0 is an improved transgenic implementation that enables inducible expression at late embryonic and larval stages and produces faster, higher reporter expression than the original system.

CFBacMamMusHumTxRep
Ev 25Rep 20Pr 71

TAEL 2.0 is a modified version of the TAEL/C120 optogenetic transcription system in which both the TAEL transcriptional activator and the C120 regulatory element were altered. In zebrafish embryos, blue light induces TAEL dimerization, binding to the C120 element, and transcriptional activation to drive light-inducible gene expression.

CFBacMamMusHumTxRep
Ev 37Rep 9Pr 49

light-inducible split Cre recombinase

Multi-Component Switch

The light-inducible split Cre recombinase is an optogenetic multi-component switch in which split Cre recombinase fragments are coupled to light-inducible dimerization modules to achieve inducible post-translational control of Cre activity. It was characterized by comprehensive screening of split sites across the Cre protein using a pooled, sequencing-based domain insertion profiling approach.

CFBacMamMusHumTxRep
Ev 28Rep 9Pr 37
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