Toolkit Items

Browse the toolkit beneath workflows. The mechanism branch runs mechanism -> architecture -> component, while the technique branch runs from high-level approaches down to concrete methods.

2 items matching 1 filter

Mechanism Branch

Layer 1

Mechanisms

Top-level concepts: biophysical action modes such as heterodimerization, photocleavage, or RNA binding.

Layer 2

Architectures

Arrangements that realize or deploy mechanisms, including switches, construct patterns, and delivery strategies.

Layer 3

Components

Low-level parts and sequence-defined elements used inside architectures, including protein domains and RNA elements.

Technique Branch

Layer 1

Approaches

High-level engineering practices such as computational design, directed evolution, sequence verification, and functional assay.

Layer 2

Methods

Concrete methods used to design, build, verify, or characterize engineered systems.

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light-induced oligomerization

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optogenetic Amyloid-b2 peptide

Construct Pattern

The optogenetic Amyloid-β2 peptide is a fluorescently tagged construct, also referred to as Aβ2-CRY2-mCherry, designed for blue-light-controlled oligomerization of an amyloid-β species in vivo. It enables inducible amyloid-β oligomerization for neurodegeneration-related studies.

CFBacMamMusHumTxRep
Ev 28Rep 9Pr 59

CRY2-mCherry-Drosophila β-catenin optogenetic switch

Multi-Component Switch

The CRY2-mCherry-Drosophila β-catenin optogenetic switch is a fusion protein comprising Arabidopsis thaliana CRY2, mCherry, and Drosophila β-catenin. Blue light induces oligomerization of the fusion protein, which inhibits downstream Wnt signaling in vitro and in vivo and enables temporal inactivation of β-catenin.

CFBacMamMusHumTxRep
Ev 28Rep 9Pr 37
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