Toolkit Items

Browse the toolkit beneath workflows. The mechanism branch runs mechanism -> architecture -> component, while the technique branch runs from high-level approaches down to concrete methods.

3 items matching 1 filter

Mechanism Branch

Layer 1

Mechanisms

Top-level concepts: biophysical action modes such as heterodimerization, photocleavage, or RNA binding.

Layer 2

Architectures

Arrangements that realize or deploy mechanisms, including switches, construct patterns, and delivery strategies.

Layer 3

Components

Low-level parts and sequence-defined elements used inside architectures, including protein domains and RNA elements.

Technique Branch

Layer 1

Approaches

High-level engineering practices such as computational design, directed evolution, sequence verification, and functional assay.

Layer 2

Methods

Concrete methods used to design, build, verify, or characterize engineered systems.

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light-inducible recombination

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viral vectors expressing light-inducible recombinases

Delivery Strategy

This delivery harness consists of viral vectors generated to express light-inducible recombinases in vivo. In the cited RecV system, Cre, Dre, and Flp were combined with the blue-light-responsive Vivid module to enable light-triggered genomic recombination in live mouse brain under one-photon or two-photon illumination.

CFBacMamMusHumTxRep
Ev 36Rep 9Pr 59

red light-inducible recombinase library

Construct Pattern

The red light-inducible recombinase library is a set of light-responsive recombination constructs reported in mammalian cells. It was applied to direct patterned myogenesis in a mesenchymal fibroblast-like cell line.

CFBacMamMusHumTxRep
Ev 28Rep 9Pr 59

light-inducible antibiotic resistance toolkit

Multi-Component Switch

The light-inducible antibiotic resistance toolkit is an optogenetic multi-component switch in Escherichia coli that uses light-inducible Cre recombinase to activate antibiotic resistance gene expression. It confers blue-light-dependent survival under otherwise lethal antibiotic treatment and has been demonstrated for carbenicillin, kanamycin, chloramphenicol, and tetracycline resistance.

CFBacMamMusHumTxRep
Ev 36Rep 9Pr 37
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