Toolkit Items

Browse the toolkit beneath workflows. The mechanism branch runs mechanism -> architecture -> component, while the technique branch runs from high-level approaches down to concrete methods.

8 items matching 1 filter

Mechanism Branch

Layer 1

Mechanisms

Top-level concepts: biophysical action modes such as heterodimerization, photocleavage, or RNA binding.

Layer 2

Architectures

Arrangements that realize or deploy mechanisms, including switches, construct patterns, and delivery strategies.

Layer 3

Components

Low-level parts and sequence-defined elements used inside architectures, including protein domains and RNA elements.

Technique Branch

Layer 1

Approaches

High-level engineering practices such as computational design, directed evolution, sequence verification, and functional assay.

Layer 2

Methods

Concrete methods used to design, build, verify, or characterize engineered systems.

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light-triggered activation

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photo-caged PROTACs

Construct Pattern

Photo-caged PROTACs (pc-PROTACs) are light-activated proteolysis-targeting chimeras designed to trigger targeted protein degradation only after irradiation. The reported study presented pc-PROTACs as a general strategy for inducing degradation activity with light and showed that pc-PROTAC1 was potently active in live cells only after light exposure.

CFBacMamMusHumTxRep
Ev 28Rep 9Pr 59

photocontrollable nucleic acid displacement reaction

Engineering Method

Photocontrollable nucleic acid displacement reaction is a light-gated nucleic acid engineering method used within a near-infrared-activatable cascade recycling amplification system. In the cited implementation, it is integrated with exonuclease III-assisted nucleic acid amplification and upconversion nanoparticles to enable spatiotemporally controllable, signal-amplified mRNA imaging in selected living cancer cells.

CFBacMamMusHumTxRep
Ev 28Rep 9Pr 59

upconversion nanoparticle

Delivery Strategy

An upconversion nanoparticle is used as a light-transducing component in an immunodevice that converts near-infrared input into activation of a UV light-activatable immunostimulatory agent. In the reported 2019 Nature Communications system, this enabled remote and spatially selective control of antitumor immunity in vitro and in vivo.

CFBacMamMusHumTxRep
Ev 28Rep 9Pr 59

photosensitive compounds

Construct Pattern

Moreover, we highlight the principal guidelines for the development of light-responsive materials and photosensitive compounds.

CFBacMamMusHumTxRep
Ev 20Rep 9Pr 59

upconversion nanoparticle-based immunodevice

Multi-Component Switch

The upconversion nanoparticle-based immunodevice is a multi-component, light-activatable immunodevice for remote optical control of antitumor immunity in vitro and in vivo. It combines a rationally designed UV light-activatable immunostimulatory agent with an upconversion nanoparticle that transduces near-infrared light sensitivity into device activation.

CFBacMamMusHumTxRep
Ev 28Rep 9Pr 37
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