Toolkit Items

Browse the toolkit beneath workflows. The mechanism branch runs mechanism -> architecture -> component, while the technique branch runs from high-level approaches down to concrete methods.

5 items matching 1 filter

Mechanism Branch

Layer 1

Mechanisms

Top-level concepts: biophysical action modes such as heterodimerization, photocleavage, or RNA binding.

Layer 2

Architectures

Arrangements that realize or deploy mechanisms, including switches, construct patterns, and delivery strategies.

Layer 3

Components

Low-level parts and sequence-defined elements used inside architectures, including protein domains and RNA elements.

Technique Branch

Layer 1

Approaches

High-level engineering practices such as computational design, directed evolution, sequence verification, and functional assay.

Layer 2

Methods

Concrete methods used to design, build, verify, or characterize engineered systems.

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nucleic acid hybridization

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Affymetrix ATH1 microarray

Assay Method

The Affymetrix ATH1 microarray is a transcript expression assay for genome-scale expression profiling in Arabidopsis thaliana. In the cited AtGenExpress study, it was used to generate a comprehensive transcript dataset across abiotic stress conditions including UV-B light, drought, and cold.

CFBacMamMusHumTxRep
Ev 28Rep 9Pr 59

expressed sequence tag-based microarray

Assay Method

An expressed sequence tag-based microarray is a microarray expression-profiling assay used to measure genome-scale transcript patterns in Arabidopsis. In the cited study, it was applied to profile gene expression underlying light-controlled development across different light conditions.

CFBacMamMusHumTxRep
Ev 28Rep 9Pr 59
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