Toolkit Items

Browse the toolkit beneath workflows. The mechanism branch runs mechanism -> architecture -> component, while the technique branch runs from high-level approaches down to concrete methods.

7 items matching 1 filter

Mechanism Branch

Layer 1

Mechanisms

Top-level concepts: biophysical action modes such as heterodimerization, photocleavage, or RNA binding.

Layer 2

Architectures

Arrangements that realize or deploy mechanisms, including switches, construct patterns, and delivery strategies.

Layer 3

Components

Low-level parts and sequence-defined elements used inside architectures, including protein domains and RNA elements.

Technique Branch

Layer 1

Approaches

High-level engineering practices such as computational design, directed evolution, sequence verification, and functional assay.

Layer 2

Methods

Concrete methods used to design, build, verify, or characterize engineered systems.

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optogenetic photoactivation

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Bessel beam stimulation source integrated into LLSM

Assay Method

The Bessel beam stimulation source integrated into lattice light-sheet microscopy (LLSM) is an optical assay configuration that adds Bessel-beam-based optogenetic stimulation to LLSM without changing the microscope optical configuration. It enables three-dimensional photoactivation with improved spatiotemporal control and has been used to manipulate subcellular membrane ruffling and guide cell migration.

CFBacMamMusHumTxRep
Ev 28Rep 9Pr 59

voltage-sensitive dye imaging

Assay Method

We review recently developed functional mapping methods that use optogenetic single-point stimulation in the rodent brain and employ cellular electrophysiology, evoked motor movements, voltage sensitive dyes (VSDs), calcium indicators, or functional magnetic resonance imaging (fMRI) to assess activity.

CFBacMamMusHumTxRep
Ev 28Rep 9Pr 59

projection-specific optogenetic manipulation

Construct Pattern

The supplied web research summary describes projection-specific manipulation as a central strategy across the anchor review and linked primary papers for dissection of pathways such as BNST→VTA and VTA→NAc/mPFC.

CFBacMamMusHumTxRep
Ev 18Rep 9Pr 59

optokindling

Engineering Method

An optogenetic variant of the classical kindling model of epileptic seizures, in which activatable cells are genetically defined, is called optokindling.

CFBacMamMusHumTxRep
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