Toolkit Items

Browse the toolkit beneath workflows. The mechanism branch runs mechanism -> architecture -> component, while the technique branch runs from high-level approaches down to concrete methods.

3 items matching 1 filter

Mechanism Branch

Layer 1

Mechanisms

Top-level concepts: biophysical action modes such as heterodimerization, photocleavage, or RNA binding.

Layer 2

Architectures

Arrangements that realize or deploy mechanisms, including switches, construct patterns, and delivery strategies.

Layer 3

Components

Low-level parts and sequence-defined elements used inside architectures, including protein domains and RNA elements.

Technique Branch

Layer 1

Approaches

High-level engineering practices such as computational design, directed evolution, sequence verification, and functional assay.

Layer 2

Methods

Concrete methods used to design, build, verify, or characterize engineered systems.

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rna interference-mediated gene knockdown

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short-hairpin RNA depletion of CIB1

Engineering Method

Short-hairpin RNA depletion of CIB1 is an RNA interference-based gene knockdown method used in HEK293 cells to reduce CIB1 expression. In the cited study, stable and transient CIB1 depletion increased cellular Ca2+ responses to the InsP3-generating ligands ATP, UTP, and carbachol.

CFBacMamMusHumTxRep
Ev 28Rep 9Pr 71

2-OMe-modified HSPA12B siRNA

Construct Pattern

The mice were treated by nasal inhalation of 2-OMe-modified HSPA12B siRNA... Nasal inhalation of nano-polymer-encapsulated HSPA12B siRNA specifically downregulated mRNA and protein expression levels of HSPA12B in lung tissues.

CFBacMamMusHumTxRep
Ev 20Rep 9Pr 71

lentivirus-mediated short hairpin RNA targeting Cib1

Construct Pattern

Lentivirus-mediated short hairpin RNA targeting Cib1 is a gene-silencing perturbation used to reduce CIB1 expression in mouse cardiac settings. In the cited study, intramuscular delivery of a lentiviral shRNA construct was used to examine how CIB1 downregulation affects myocardial fibrosis, cardiac dysfunction, and PI3K/Akt signaling after myocardial infarction or during angiotensin II stimulation.

CFBacMamMusHumTxRep
Ev 20Rep 9Pr 71
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