Toolkit Items

Browse the toolkit beneath workflows. The mechanism branch runs mechanism -> architecture -> component, while the technique branch runs from high-level approaches down to concrete methods.

11 items matching 1 filter

Mechanism Branch

Layer 1

Mechanisms

Top-level concepts: biophysical action modes such as heterodimerization, photocleavage, or RNA binding.

Layer 2

Architectures

Arrangements that realize or deploy mechanisms, including switches, construct patterns, and delivery strategies.

Layer 3

Components

Low-level parts and sequence-defined elements used inside architectures, including protein domains and RNA elements.

Technique Branch

Layer 1

Approaches

High-level engineering practices such as computational design, directed evolution, sequence verification, and functional assay.

Layer 2

Methods

Concrete methods used to design, build, verify, or characterize engineered systems.

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split-protein reconstitution

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EGxxFP Cas9 reporter

Construct Pattern

EGxxFP is a Cas9 reporter construct used in split-Cas9 synthetic circuits to convert successful Cas9 reconstitution into a fluorescent readout. In the cited 2023 Scientific Reports study, it reported cellular states and events including cancer epithelial origin, epithelial-to-mesenchymal transition, and cell-cell fusion.

CFBacMamMusHumTxRep
Ev 58Rep 9Pr 71

split luminescent enzyme reconstituted by magnetic stimulus

Construct Pattern

This tool is a split luminescent enzyme construct engineered with a magneto-sensitive protein so that enzyme reconstitution is driven by a 50 mT magnetic stimulus. It was described as a component of a magneto-photonic gene circuit in mammalian cells for minimally invasive control of gene expression.

CFBacMamMusHumTxRep
Ev 28Rep 9Pr 71

intein-mediated split-Cas9 system

Multi-Component Switch

The intein-mediated split-Cas9 system is a multi-component CRISPR-Cas9 architecture in which Cas9 is divided into separate parts and reconstituted through split inteins. It was developed to bypass packaging limits while retaining nuclease activity comparable to wild-type Cas9, and a split-Cas9D10A version showed activity similar to Cas9D10A nickase.

CFBacMamMusHumTxRep
Ev 28Rep 9Pr 49

split and inducible adenine base editor

Multi-Component Switch

The split and inducible adenine base editor is a multi-component adenine base editing system reported for precise in vivo base editing. The available evidence indicates that the editor is both split and inducible, but the supplied material does not specify its molecular architecture or induction modality.

CFBacMamMusHumTxRep
Ev 28Rep 9Pr 49

light-inducible split Cre recombinase

Multi-Component Switch

The light-inducible split Cre recombinase is an optogenetic multi-component switch in which split Cre recombinase fragments are coupled to light-inducible dimerization modules to achieve inducible post-translational control of Cre activity. It was characterized by comprehensive screening of split sites across the Cre protein using a pooled, sequencing-based domain insertion profiling approach.

CFBacMamMusHumTxRep
Ev 28Rep 9Pr 37

Here, we present the CRISTAL (Control of RNA with Inducible SpliT CAs13 Orthologs and Exogenous Ligands) platform. CRISTAL is powered by a collection (10 total) of orthogonal split inducible Cas13 effectors that can be turned ON or OFF via small molecules in multiple cell types, providing precise temporal control.

CFBacMamMusHumTxRep
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