Toolkit Items

Browse the toolkit beneath workflows. The mechanism branch runs mechanism -> architecture -> component, while the technique branch runs from high-level approaches down to concrete methods.

5 items matching 1 filter

Mechanism Branch

Layer 1

Mechanisms

Top-level concepts: biophysical action modes such as heterodimerization, photocleavage, or RNA binding.

Layer 2

Architectures

Arrangements that realize or deploy mechanisms, including switches, construct patterns, and delivery strategies.

Layer 3

Components

Low-level parts and sequence-defined elements used inside architectures, including protein domains and RNA elements.

Technique Branch

Layer 1

Approaches

High-level engineering practices such as computational design, directed evolution, sequence verification, and functional assay.

Layer 2

Methods

Concrete methods used to design, build, verify, or characterize engineered systems.

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synthetic notch receptor activation

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Dual synthetic pathway and dual-ligand microfluidic tissue patterning

Construct Pattern

Dual synthetic pathway and dual-ligand microfluidic tissue patterning is a synNotch-based material-to-cell signaling strategy in which mammalian cells carrying two distinct synthetic pathways are cultured on surfaces microfluidically patterned with two synNotch ligands. In the cited 2023 study, this configuration generated tissues containing up to three distinct cell phenotypes in user-defined spatial arrangements.

CFBacMamMusHumTxRep
Ev 28Rep 9Pr 71

Fibronectin-conjugated synNotch ligand display

Construct Pattern

Fibronectin-conjugated synNotch ligand display is a material-to-cell signaling construct in which synNotch ligands such as GFP are conjugated to cell-generated extracellular matrix proteins through genetic engineering of fibronectin produced by fibroblasts. The resulting ECM-presented ligand can activate synthetic Notch receptors and induce prescribed transcriptional programs in mammalian cells.

CFBacMamMusHumTxRep
Ev 28Rep 9Pr 71

Gelatin-linked synNotch ligand hydrogel platform

Construct Pattern

The gelatin-linked synNotch ligand hydrogel platform is a material-to-cell signaling system in which synNotch ligands are covalently attached to gelatin polymers by enzymatic conjugation or click chemistry. These ligand-functionalized hydrogels activate synthetic Notch receptors in mammalian cells cultured on or within the material, enabling prescribed transcriptional responses and spatial control of cell phenotypes.

CFBacMamMusHumTxRep
Ev 28Rep 9Pr 71

Material-to-cell synNotch ligand platforms

Delivery Strategy

Material-to-cell synNotch ligand platforms are engineered biomaterial and extracellular matrix systems that present synNotch ligands to mammalian cells. In the reported 2023 implementation, ligands were covalently incorporated into gelatin hydrogels or into cell-generated fibronectin-containing extracellular matrix to activate synthetic Notch receptors and induce programmed transcriptional outputs.

CFBacMamMusHumTxRep
Ev 28Rep 9Pr 71
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