Toolkit/exonuclease III assisted nucleic acid cascade recycling amplification

exonuclease III assisted nucleic acid cascade recycling amplification

Engineering Method·Research·Since 2020

Also known as: EXO III assisted nucleic acid cascade recycling amplification

Taxonomy: Technique Branch / Method. Workflows sit above the mechanism and technique branches rather than replacing them.

Summary

Exonuclease III assisted nucleic acid cascade recycling amplification is an engineered nucleic acid signal amplification method used within a near-infrared light-activatable circuit. In the cited implementation, it is combined with a photocontrollable nucleic acid displacement reaction and upconversion nanoparticles to enable spatiotemporally controllable amplified mRNA imaging in living cancer cells.

Usefulness & Problems

Why this is useful

This method is useful because it couples enzymatic nucleic acid recycling amplification to optical triggering, allowing amplification to be turned on by near-infrared light rather than proceeding constitutively. The reported application is signal-amplified mRNA imaging in selected living cancer cells with spatiotemporal control.

Source:

As a proof of concept, we demonstrate this developed NIR light triggered signal amplification process in selected living cancer cells for spatiotemporally controllable signal amplified mRNA imaging.

Problem solved

It addresses the problem of achieving controllable nucleic acid signal amplification for intracellular mRNA imaging, specifically adding near-infrared light control over when and where amplification occurs. The cited work frames this as a spatiotemporally controllable signal amplification strategy in living cancer cells.

Source:

As a proof of concept, we demonstrate this developed NIR light triggered signal amplification process in selected living cancer cells for spatiotemporally controllable signal amplified mRNA imaging.

Problem links

Need precise spatiotemporal control with light input

Derived

Exonuclease III assisted nucleic acid cascade recycling amplification is an engineering method for light-triggered nucleic acid signal amplification. In the cited implementation, it is integrated with a photocontrollable nucleic acid displacement reaction and upconversion nanoparticles to enable near-infrared (NIR) activated, spatiotemporally controllable amplified mRNA imaging in living cancer cells.

Taxonomy & Function

Implementation Constraints

cofactor dependency: cofactor requirement unknownencoding mode: genetically encodedimplementation constraint: context specific validationimplementation constraint: spectral hardware requirementoperating role: builder

The reported implementation requires exonuclease III, a photocontrollable nucleic acid displacement module, and upconversion nanoparticles to achieve NIR activation. The evidence supports use in living cancer cells for mRNA imaging, but it does not specify construct sequences, irradiation parameters, delivery methods, or nanoparticle composition.

The supplied evidence is limited to a single cited implementation and does not report quantitative performance metrics such as gain, sensitivity, background suppression, kinetics, or multiplexing capacity. Independent replication, broader organismal validation, and detailed operating constraints are not provided in the evidence.

Validation

Cell-freeBacteriaMammalianMouseHumanTherapeuticIndep. Replication

Supporting Sources

Ranked Claims

Claim 1application demosupports2020Source 1needs review

The developed NIR light triggered signal amplification process was demonstrated in selected living cancer cells for spatiotemporally controllable signal amplified mRNA imaging.

As a proof of concept, we demonstrate this developed NIR light triggered signal amplification process in selected living cancer cells for spatiotemporally controllable signal amplified mRNA imaging.
Claim 2application demosupports2020Source 1needs review

The developed NIR light triggered signal amplification process was demonstrated in selected living cancer cells for spatiotemporally controllable signal amplified mRNA imaging.

As a proof of concept, we demonstrate this developed NIR light triggered signal amplification process in selected living cancer cells for spatiotemporally controllable signal amplified mRNA imaging.
Claim 3application demosupports2020Source 1needs review

The developed NIR light triggered signal amplification process was demonstrated in selected living cancer cells for spatiotemporally controllable signal amplified mRNA imaging.

As a proof of concept, we demonstrate this developed NIR light triggered signal amplification process in selected living cancer cells for spatiotemporally controllable signal amplified mRNA imaging.
Claim 4application demosupports2020Source 1needs review

The developed NIR light triggered signal amplification process was demonstrated in selected living cancer cells for spatiotemporally controllable signal amplified mRNA imaging.

As a proof of concept, we demonstrate this developed NIR light triggered signal amplification process in selected living cancer cells for spatiotemporally controllable signal amplified mRNA imaging.
Claim 5application demosupports2020Source 1needs review

The developed NIR light triggered signal amplification process was demonstrated in selected living cancer cells for spatiotemporally controllable signal amplified mRNA imaging.

As a proof of concept, we demonstrate this developed NIR light triggered signal amplification process in selected living cancer cells for spatiotemporally controllable signal amplified mRNA imaging.
Claim 6application demosupports2020Source 1needs review

The developed NIR light triggered signal amplification process was demonstrated in selected living cancer cells for spatiotemporally controllable signal amplified mRNA imaging.

As a proof of concept, we demonstrate this developed NIR light triggered signal amplification process in selected living cancer cells for spatiotemporally controllable signal amplified mRNA imaging.
Claim 7application demosupports2020Source 1needs review

The developed NIR light triggered signal amplification process was demonstrated in selected living cancer cells for spatiotemporally controllable signal amplified mRNA imaging.

As a proof of concept, we demonstrate this developed NIR light triggered signal amplification process in selected living cancer cells for spatiotemporally controllable signal amplified mRNA imaging.
Claim 8application demosupports2020Source 1needs review

The developed NIR light triggered signal amplification process was demonstrated in selected living cancer cells for spatiotemporally controllable signal amplified mRNA imaging.

As a proof of concept, we demonstrate this developed NIR light triggered signal amplification process in selected living cancer cells for spatiotemporally controllable signal amplified mRNA imaging.
Claim 9application demosupports2020Source 1needs review

The developed NIR light triggered signal amplification process was demonstrated in selected living cancer cells for spatiotemporally controllable signal amplified mRNA imaging.

As a proof of concept, we demonstrate this developed NIR light triggered signal amplification process in selected living cancer cells for spatiotemporally controllable signal amplified mRNA imaging.
Claim 10application demosupports2020Source 1needs review

The developed NIR light triggered signal amplification process was demonstrated in selected living cancer cells for spatiotemporally controllable signal amplified mRNA imaging.

As a proof of concept, we demonstrate this developed NIR light triggered signal amplification process in selected living cancer cells for spatiotemporally controllable signal amplified mRNA imaging.
Claim 11method compositionsupports2020Source 1needs review

The NIR-activatable amplification strategy is achieved by integrating a photocontrollable nucleic acid displacement reaction, exonuclease III assisted nucleic acid cascade recycling amplification, and upconversion nanoparticles.

This strategy is achieved by integrating photocontrollable nucleic acid displacement reaction with exonuclease III (EXO III) assisted nucleic acid cascade recycling amplification and combination with upconversion nanoparticles (UCNPs), thus resulting in a NIR light activatable signal amplification.
Claim 12method compositionsupports2020Source 1needs review

The NIR-activatable amplification strategy is achieved by integrating a photocontrollable nucleic acid displacement reaction, exonuclease III assisted nucleic acid cascade recycling amplification, and upconversion nanoparticles.

This strategy is achieved by integrating photocontrollable nucleic acid displacement reaction with exonuclease III (EXO III) assisted nucleic acid cascade recycling amplification and combination with upconversion nanoparticles (UCNPs), thus resulting in a NIR light activatable signal amplification.
Claim 13method compositionsupports2020Source 1needs review

The NIR-activatable amplification strategy is achieved by integrating a photocontrollable nucleic acid displacement reaction, exonuclease III assisted nucleic acid cascade recycling amplification, and upconversion nanoparticles.

This strategy is achieved by integrating photocontrollable nucleic acid displacement reaction with exonuclease III (EXO III) assisted nucleic acid cascade recycling amplification and combination with upconversion nanoparticles (UCNPs), thus resulting in a NIR light activatable signal amplification.
Claim 14method compositionsupports2020Source 1needs review

The NIR-activatable amplification strategy is achieved by integrating a photocontrollable nucleic acid displacement reaction, exonuclease III assisted nucleic acid cascade recycling amplification, and upconversion nanoparticles.

This strategy is achieved by integrating photocontrollable nucleic acid displacement reaction with exonuclease III (EXO III) assisted nucleic acid cascade recycling amplification and combination with upconversion nanoparticles (UCNPs), thus resulting in a NIR light activatable signal amplification.
Claim 15method compositionsupports2020Source 1needs review

The NIR-activatable amplification strategy is achieved by integrating a photocontrollable nucleic acid displacement reaction, exonuclease III assisted nucleic acid cascade recycling amplification, and upconversion nanoparticles.

This strategy is achieved by integrating photocontrollable nucleic acid displacement reaction with exonuclease III (EXO III) assisted nucleic acid cascade recycling amplification and combination with upconversion nanoparticles (UCNPs), thus resulting in a NIR light activatable signal amplification.
Claim 16method compositionsupports2020Source 1needs review

The NIR-activatable amplification strategy is achieved by integrating a photocontrollable nucleic acid displacement reaction, exonuclease III assisted nucleic acid cascade recycling amplification, and upconversion nanoparticles.

This strategy is achieved by integrating photocontrollable nucleic acid displacement reaction with exonuclease III (EXO III) assisted nucleic acid cascade recycling amplification and combination with upconversion nanoparticles (UCNPs), thus resulting in a NIR light activatable signal amplification.
Claim 17method compositionsupports2020Source 1needs review

The NIR-activatable amplification strategy is achieved by integrating a photocontrollable nucleic acid displacement reaction, exonuclease III assisted nucleic acid cascade recycling amplification, and upconversion nanoparticles.

This strategy is achieved by integrating photocontrollable nucleic acid displacement reaction with exonuclease III (EXO III) assisted nucleic acid cascade recycling amplification and combination with upconversion nanoparticles (UCNPs), thus resulting in a NIR light activatable signal amplification.
Claim 18method compositionsupports2020Source 1needs review

The NIR-activatable amplification strategy is achieved by integrating a photocontrollable nucleic acid displacement reaction, exonuclease III assisted nucleic acid cascade recycling amplification, and upconversion nanoparticles.

This strategy is achieved by integrating photocontrollable nucleic acid displacement reaction with exonuclease III (EXO III) assisted nucleic acid cascade recycling amplification and combination with upconversion nanoparticles (UCNPs), thus resulting in a NIR light activatable signal amplification.
Claim 19method compositionsupports2020Source 1needs review

The NIR-activatable amplification strategy is achieved by integrating a photocontrollable nucleic acid displacement reaction, exonuclease III assisted nucleic acid cascade recycling amplification, and upconversion nanoparticles.

This strategy is achieved by integrating photocontrollable nucleic acid displacement reaction with exonuclease III (EXO III) assisted nucleic acid cascade recycling amplification and combination with upconversion nanoparticles (UCNPs), thus resulting in a NIR light activatable signal amplification.
Claim 20method compositionsupports2020Source 1needs review

The NIR-activatable amplification strategy is achieved by integrating a photocontrollable nucleic acid displacement reaction, exonuclease III assisted nucleic acid cascade recycling amplification, and upconversion nanoparticles.

This strategy is achieved by integrating photocontrollable nucleic acid displacement reaction with exonuclease III (EXO III) assisted nucleic acid cascade recycling amplification and combination with upconversion nanoparticles (UCNPs), thus resulting in a NIR light activatable signal amplification.
Claim 21method compositionsupports2020Source 1needs review

The NIR-activatable amplification strategy is achieved by integrating a photocontrollable nucleic acid displacement reaction, exonuclease III assisted nucleic acid cascade recycling amplification, and upconversion nanoparticles.

This strategy is achieved by integrating photocontrollable nucleic acid displacement reaction with exonuclease III (EXO III) assisted nucleic acid cascade recycling amplification and combination with upconversion nanoparticles (UCNPs), thus resulting in a NIR light activatable signal amplification.
Claim 22method compositionsupports2020Source 1needs review

The NIR-activatable amplification strategy is achieved by integrating a photocontrollable nucleic acid displacement reaction, exonuclease III assisted nucleic acid cascade recycling amplification, and upconversion nanoparticles.

This strategy is achieved by integrating photocontrollable nucleic acid displacement reaction with exonuclease III (EXO III) assisted nucleic acid cascade recycling amplification and combination with upconversion nanoparticles (UCNPs), thus resulting in a NIR light activatable signal amplification.
Claim 23method compositionsupports2020Source 1needs review

The NIR-activatable amplification strategy is achieved by integrating a photocontrollable nucleic acid displacement reaction, exonuclease III assisted nucleic acid cascade recycling amplification, and upconversion nanoparticles.

This strategy is achieved by integrating photocontrollable nucleic acid displacement reaction with exonuclease III (EXO III) assisted nucleic acid cascade recycling amplification and combination with upconversion nanoparticles (UCNPs), thus resulting in a NIR light activatable signal amplification.
Claim 24method compositionsupports2020Source 1needs review

The NIR-activatable amplification strategy is achieved by integrating a photocontrollable nucleic acid displacement reaction, exonuclease III assisted nucleic acid cascade recycling amplification, and upconversion nanoparticles.

This strategy is achieved by integrating photocontrollable nucleic acid displacement reaction with exonuclease III (EXO III) assisted nucleic acid cascade recycling amplification and combination with upconversion nanoparticles (UCNPs), thus resulting in a NIR light activatable signal amplification.
Claim 25method compositionsupports2020Source 1needs review

The NIR-activatable amplification strategy is achieved by integrating a photocontrollable nucleic acid displacement reaction, exonuclease III assisted nucleic acid cascade recycling amplification, and upconversion nanoparticles.

This strategy is achieved by integrating photocontrollable nucleic acid displacement reaction with exonuclease III (EXO III) assisted nucleic acid cascade recycling amplification and combination with upconversion nanoparticles (UCNPs), thus resulting in a NIR light activatable signal amplification.
Claim 26method compositionsupports2020Source 1needs review

The NIR-activatable amplification strategy is achieved by integrating a photocontrollable nucleic acid displacement reaction, exonuclease III assisted nucleic acid cascade recycling amplification, and upconversion nanoparticles.

This strategy is achieved by integrating photocontrollable nucleic acid displacement reaction with exonuclease III (EXO III) assisted nucleic acid cascade recycling amplification and combination with upconversion nanoparticles (UCNPs), thus resulting in a NIR light activatable signal amplification.
Claim 27method compositionsupports2020Source 1needs review

The NIR-activatable amplification strategy is achieved by integrating a photocontrollable nucleic acid displacement reaction, exonuclease III assisted nucleic acid cascade recycling amplification, and upconversion nanoparticles.

This strategy is achieved by integrating photocontrollable nucleic acid displacement reaction with exonuclease III (EXO III) assisted nucleic acid cascade recycling amplification and combination with upconversion nanoparticles (UCNPs), thus resulting in a NIR light activatable signal amplification.
Claim 28method introductionsupports2020Source 1needs review

The paper presents a photocontrollable nucleic acid cascade recycling amplification strategy that uses near-infrared light to control and trigger the amplification process.

Herein, we present a conceptual study termed as photocontrollable nucleic acid cascade recycling amplification which uses near-infrared (NIR) light to precisely control and trigger the whole process.
Claim 29method introductionsupports2020Source 1needs review

The paper presents a photocontrollable nucleic acid cascade recycling amplification strategy that uses near-infrared light to control and trigger the amplification process.

Herein, we present a conceptual study termed as photocontrollable nucleic acid cascade recycling amplification which uses near-infrared (NIR) light to precisely control and trigger the whole process.
Claim 30method introductionsupports2020Source 1needs review

The paper presents a photocontrollable nucleic acid cascade recycling amplification strategy that uses near-infrared light to control and trigger the amplification process.

Herein, we present a conceptual study termed as photocontrollable nucleic acid cascade recycling amplification which uses near-infrared (NIR) light to precisely control and trigger the whole process.
Claim 31method introductionsupports2020Source 1needs review

The paper presents a photocontrollable nucleic acid cascade recycling amplification strategy that uses near-infrared light to control and trigger the amplification process.

Herein, we present a conceptual study termed as photocontrollable nucleic acid cascade recycling amplification which uses near-infrared (NIR) light to precisely control and trigger the whole process.
Claim 32method introductionsupports2020Source 1needs review

The paper presents a photocontrollable nucleic acid cascade recycling amplification strategy that uses near-infrared light to control and trigger the amplification process.

Herein, we present a conceptual study termed as photocontrollable nucleic acid cascade recycling amplification which uses near-infrared (NIR) light to precisely control and trigger the whole process.
Claim 33method introductionsupports2020Source 1needs review

The paper presents a photocontrollable nucleic acid cascade recycling amplification strategy that uses near-infrared light to control and trigger the amplification process.

Herein, we present a conceptual study termed as photocontrollable nucleic acid cascade recycling amplification which uses near-infrared (NIR) light to precisely control and trigger the whole process.
Claim 34method introductionsupports2020Source 1needs review

The paper presents a photocontrollable nucleic acid cascade recycling amplification strategy that uses near-infrared light to control and trigger the amplification process.

Herein, we present a conceptual study termed as photocontrollable nucleic acid cascade recycling amplification which uses near-infrared (NIR) light to precisely control and trigger the whole process.
Claim 35method introductionsupports2020Source 1needs review

The paper presents a photocontrollable nucleic acid cascade recycling amplification strategy that uses near-infrared light to control and trigger the amplification process.

Herein, we present a conceptual study termed as photocontrollable nucleic acid cascade recycling amplification which uses near-infrared (NIR) light to precisely control and trigger the whole process.
Claim 36method introductionsupports2020Source 1needs review

The paper presents a photocontrollable nucleic acid cascade recycling amplification strategy that uses near-infrared light to control and trigger the amplification process.

Herein, we present a conceptual study termed as photocontrollable nucleic acid cascade recycling amplification which uses near-infrared (NIR) light to precisely control and trigger the whole process.
Claim 37method introductionsupports2020Source 1needs review

The paper presents a photocontrollable nucleic acid cascade recycling amplification strategy that uses near-infrared light to control and trigger the amplification process.

Herein, we present a conceptual study termed as photocontrollable nucleic acid cascade recycling amplification which uses near-infrared (NIR) light to precisely control and trigger the whole process.

Approval Evidence

1 source1 linked approval claimfirst-pass slug exonuclease-iii-assisted-nucleic-acid-cascade-recycling-amplification
This strategy is achieved by integrating photocontrollable nucleic acid displacement reaction with exonuclease III (EXO III) assisted nucleic acid cascade recycling amplification

Source:

method compositionsupports

The NIR-activatable amplification strategy is achieved by integrating a photocontrollable nucleic acid displacement reaction, exonuclease III assisted nucleic acid cascade recycling amplification, and upconversion nanoparticles.

This strategy is achieved by integrating photocontrollable nucleic acid displacement reaction with exonuclease III (EXO III) assisted nucleic acid cascade recycling amplification and combination with upconversion nanoparticles (UCNPs), thus resulting in a NIR light activatable signal amplification.

Source:

Comparisons

Source-backed strengths

The main demonstrated strength is integration into a NIR-triggered amplification process for spatiotemporally controllable, signal-amplified mRNA imaging in living cancer cells. The method composition explicitly combines photocontrollable nucleic acid displacement, EXO III-assisted cascade recycling amplification, and upconversion nanoparticles, supporting modular control of activation.

exonuclease III assisted nucleic acid cascade recycling amplification and Method for efficient synthesis of phycocyanobilin in cultured mammalian cells address a similar problem space.

Shared frame: same top-level item type; same primary input modality: light

Strengths here: may avoid an exogenous cofactor requirement.

exonuclease III assisted nucleic acid cascade recycling amplification and photocontrollable nucleic acid cascade recycling amplification address a similar problem space.

Shared frame: same top-level item type; shared mechanisms: nucleic acid strand displacement; same primary input modality: light

exonuclease III assisted nucleic acid cascade recycling amplification and photocontrollable nucleic acid displacement reaction address a similar problem space.

Shared frame: same top-level item type; shared mechanisms: upconversion nanoparticle-mediated nir activation; same primary input modality: light

Ranked Citations

  1. 1.
    StructuralSource 1Analytical Chemistry2020Claim 10Claim 10Claim 10

    Extracted from this source document.