Toolkit Items

Browse the toolkit beneath workflows. The mechanism branch runs mechanism -> architecture -> component, while the technique branch runs from high-level approaches down to concrete methods.

6 items matching 1 filter

Mechanism Branch

Layer 1

Mechanisms

Top-level concepts: biophysical action modes such as heterodimerization, photocleavage, or RNA binding.

Layer 2

Architectures

Arrangements that realize or deploy mechanisms, including switches, construct patterns, and delivery strategies.

Layer 3

Components

Low-level parts and sequence-defined elements used inside architectures, including protein domains and RNA elements.

Technique Branch

Layer 1

Approaches

High-level engineering practices such as computational design, directed evolution, sequence verification, and functional assay.

Layer 2

Methods

Concrete methods used to design, build, verify, or characterize engineered systems.

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light-inducible heterodimerization

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PhyB/PIF is a genetically encoded red/far-red light-inducible dimerization system built from phytochrome B and phytochrome-interacting factor. It enables reversible light-controlled protein association and dissociation on the second time scale and has been applied to gene regulation, protein transport, and subcellular recruitment.

CFBacMamMusHumTxRep
Ev 74Rep 31Pr 37

optogenetic GEF specific for Cdc42

Multi-Component Switch

The optogenetic GEF specific for Cdc42 is an iLID-based multi-component light-responsive system used to control a Cdc42-specific guanine nucleotide exchange factor. It enables optical recruitment or control of a GEF to manipulate localized Cdc42-family Rho GTPase signaling while bypassing upstream extracellular signaling events.

CFBacMamMusHumTxRep
Ev 28Rep 9Pr 59

BphP1-QPAS1 is a near-infrared light-inducible protein interaction system in which the bacterial phytochrome BphP1 binds an engineered partner, QPAS1, for optical protein regulation in mammalian cells. It has been incorporated into multi-component optogenetic tools for transcriptional control and protein targeting, including use in neurons and non-neuronal cells.

CFBacMamMusHumTxRep
Ev 28Rep 9Pr 37

PA-Tet-OFF/ON system

Multi-Component Switch

The PA-Tet-OFF/ON system is a photoactivatable version of the Tet gene expression platform that incorporates the Cry2-CIB1 light-inducible binding switch to control expression of a gene of interest. It enables light- and drug-regulated transcription with precise temporal control and was demonstrated for optogenetic regulation of exogenous gene expression in developing and adult mouse brains.

CFBacMamMusHumTxRep
Ev 28Rep 9Pr 37
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