Toolkit Items

Browse the toolkit beneath workflows. The mechanism branch runs mechanism -> architecture -> component, while the technique branch runs from high-level approaches down to concrete methods.

30 items matching 1 filter

Mechanism Branch

Layer 1

Mechanisms

Top-level concepts: biophysical action modes such as heterodimerization, photocleavage, or RNA binding.

Layer 2

Architectures

Arrangements that realize or deploy mechanisms, including switches, construct patterns, and delivery strategies.

Layer 3

Components

Low-level parts and sequence-defined elements used inside architectures, including protein domains and RNA elements.

Technique Branch

Layer 1

Approaches

High-level engineering practices such as computational design, directed evolution, sequence verification, and functional assay.

Layer 2

Methods

Concrete methods used to design, build, verify, or characterize engineered systems.

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photoisomerization

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azobenzene-cyclodextrin host-guest siRNA release module

Construct Pattern

The azobenzene-cyclodextrin host-guest siRNA release module is a light-responsive siRNA carrier motif built on azobenzene–cyclodextrin host-guest association. In the reported system, near-infrared irradiation is converted by upconversion nanoparticles into UV emission that induces azobenzene photoisomerization and controlled siRNA release.

CFBacMamMusHumTxRep
Ev 28Rep 9Pr 59

azobenzene-incorporated polymers and surfaces

Construct Pattern

This review describes polymers and surfaces that have been prepared recently that incorporate azobenzene groups, and some of the interesting physical and chemical properties that can be switched reversibly as a result.

CFBacMamMusHumTxRep
Ev 20Rep 9Pr 59

azobenzene-carbon nanotube hybrids

Construct Pattern

The supplied web research summary states that the review explicitly centers on hybrids with azobenzene motifs and carbon nanomaterials, especially carbon nanotubes.

CFBacMamMusHumTxRep
Ev 20Rep 9Pr 59

light-activatable nanoplatforms

Delivery Strategy

Light-activatable nanoplatforms are light-responsive nano-regulators designed to modulate cellular events. The reviewed systems use light input, including UV-Vis-triggered photocleavage and photoisomerization, to control biological interventions across multiple application areas.

CFBacMamMusHumTxRep
Ev 20Rep 9Pr 59

light responsive hydrogels

Construct Pattern

Thus, light responsive hydrogels are of particular interests to researchers in developing accurate and controlled drug delivery systems. Light responsive hydrogels are obtained by incorporating photosensitive moieties into their polymeric structures.

CFBacMamMusHumTxRep
Ev 20Rep 9Pr 59

light-responsive nano-regulators

Delivery Strategy

Light-responsive nano-regulators are light-activatable nanoplatforms used to manipulate cellular functions with high spatiotemporal precision. The cited 2019 review describes their application to neuromodulation, stem cell monitoring, immunomanipulation, cancer therapy, and other biological target interventions.

CFBacMamMusHumTxRep
Ev 20Rep 9Pr 59

photoisomerization

Engineering Method

Photoisomerization is a light-responsive engineering method described in a 2019 review of nano-regulators for biological modulation. In that review, it is presented as a UV-Vis light-triggered approach used within light-activatable nanoplatforms to control cellular events.

CFBacMamMusHumTxRep
Ev 20Rep 9Pr 59

azobenzene-based molecular photoswitches

Protein Domain

Molecular photoswitches are a class of chemical structures that can readily isomerize between distinct geometries upon irradiation with light. Molecular photoswitches are utilized to control protein structure and function with temporal and spatial precision. In this review, we summarize the recent progress in the development of azobenzene-based molecular photoswitches and their applications in the photocontrol of protein structure and function.

CFBacMamMusHumTxRep

donor-acceptor Stenhouse adduct (DASA) photoswitch

Protein Domain

Donor-acceptor Stenhouse adduct (DASA) photoswitches have gained a lot of attention since their discovery in 2014. Their negative photochromism, visible light absorbance, synthetic tunability, and the large property changes between their photoisomers make them attractive candidates over other commonly used photoswitches for use in materials with responsive or adaptive properties.

CFBacMamMusHumTxRep

photoswitchable diarylethene-containing gramicidin S analogs

Protein Domain

LD50 values for gramicidin S and photoisomeric forms of its photoswitchable diarylethene-containing analogs were determined using mice.

CFBacMamMusHumTxRep

photoswitchable peptides

Protein Domain

Photoswitchable peptides have been recognized for many years; however, their functional implementation in biological systems has only recently been achieved... These exciting proof-of-principle studies highlight the tremendous potential of photocontrollable peptides as optochemical tools for chemical biology and biomedicine.

CFBacMamMusHumTxRep
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