Source 1review2012Protein & Cell
Toolkit/plant transcriptome profiling
plant transcriptome profiling
Taxonomy: Technique Branch / Method. Workflows sit above the mechanism and technique branches rather than replacing them.
Summary
Plant transcriptome profiling is a genomic assay approach used to measure light-induced changes in plant gene expression. The cited review describes light as causing massive reprogramming of plant transcriptomes and places transcriptome-scale profiling within genomic studies of light-controlled plant development.
Usefulness & Problems
Why this is useful
This assay method is useful for characterizing how light reshapes gene expression programs across the plant transcriptome. The cited review also situates such genomic profiling alongside studies of epigenetic regulation and genome-wide transcription factor binding in light signaling.
Problem solved
Plant transcriptome profiling helps address the problem of identifying transcriptome-wide gene expression changes triggered by light during plant development. Based on the supplied evidence, it provides a way to capture the large-scale reprogramming of gene expression induced by light.
Problem links
Need precise spatiotemporal control with light input
DerivedPlant transcriptome profiling is a genomic assay approach used to measure light-induced changes in plant gene expression. The cited review describes light as causing massive reprogramming of plant transcriptomes and places transcriptome-scale profiling within genomic studies of light-controlled plant development.
Taxonomy & Function
Primary hierarchy
Technique Branch
Method: A concrete measurement method used to characterize an engineered system.
Techniques
Functional AssayTarget processes
No target processes tagged yet.
Input: Light
Implementation Constraints
cofactor dependency: cofactor requirement unknownencoding mode: genetically encodedimplementation constraint: context specific validationimplementation constraint: spectral hardware requirementoperating role: sensor
The available evidence only supports that this is a genomic profiling approach applied to light-regulated plant gene expression. Specific implementation details such as RNA preparation, assay platform, sequencing or array workflow, construct requirements, or instrumentation are not provided.
The supplied evidence is limited to review-level statements and does not specify a particular platform, plant species, temporal resolution, sensitivity, or benchmarking data. No direct experimental protocol, performance metrics, or independent validation details are provided in the evidence set.
Validation
Cell-freeBacteriaMammalianMouseHumanTherapeuticIndep. Replication
Supporting Sources
Ranked Claims
Recent genomic studies have identified genome-wide binding sites for several pivotal transcription factors involved in light signaling.
identified binding sites across the entire genome of several pivotal transcription factors in light signaling
Recent genomic studies have identified genome-wide binding sites for several pivotal transcription factors involved in light signaling.
identified binding sites across the entire genome of several pivotal transcription factors in light signaling
Recent genomic studies have identified genome-wide binding sites for several pivotal transcription factors involved in light signaling.
identified binding sites across the entire genome of several pivotal transcription factors in light signaling
Recent genomic studies have identified genome-wide binding sites for several pivotal transcription factors involved in light signaling.
identified binding sites across the entire genome of several pivotal transcription factors in light signaling
Recent genomic studies have identified genome-wide binding sites for several pivotal transcription factors involved in light signaling.
identified binding sites across the entire genome of several pivotal transcription factors in light signaling
Recent genomic studies have identified genome-wide binding sites for several pivotal transcription factors involved in light signaling.
identified binding sites across the entire genome of several pivotal transcription factors in light signaling
Recent genomic studies have identified genome-wide binding sites for several pivotal transcription factors involved in light signaling.
identified binding sites across the entire genome of several pivotal transcription factors in light signaling
Recent genomic studies indicate that light causes massive reprogramming of plant transcriptomes.
recent genomic studies have revealed massive reprogramming of plant transcriptomes by light
Recent genomic studies indicate that light causes massive reprogramming of plant transcriptomes.
recent genomic studies have revealed massive reprogramming of plant transcriptomes by light
Recent genomic studies indicate that light causes massive reprogramming of plant transcriptomes.
recent genomic studies have revealed massive reprogramming of plant transcriptomes by light
Recent genomic studies indicate that light causes massive reprogramming of plant transcriptomes.
recent genomic studies have revealed massive reprogramming of plant transcriptomes by light
Recent genomic studies indicate that light causes massive reprogramming of plant transcriptomes.
recent genomic studies have revealed massive reprogramming of plant transcriptomes by light
Recent genomic studies indicate that light causes massive reprogramming of plant transcriptomes.
recent genomic studies have revealed massive reprogramming of plant transcriptomes by light
Recent genomic studies indicate that light causes massive reprogramming of plant transcriptomes.
recent genomic studies have revealed massive reprogramming of plant transcriptomes by light
Recent genomic studies support involvement of epigenetic regulation in light-regulated gene expression.
discovered the involvement of epigenetic regulation in light-regulated gene expression
Recent genomic studies support involvement of epigenetic regulation in light-regulated gene expression.
discovered the involvement of epigenetic regulation in light-regulated gene expression
Recent genomic studies support involvement of epigenetic regulation in light-regulated gene expression.
discovered the involvement of epigenetic regulation in light-regulated gene expression
Recent genomic studies support involvement of epigenetic regulation in light-regulated gene expression.
discovered the involvement of epigenetic regulation in light-regulated gene expression
Recent genomic studies support involvement of epigenetic regulation in light-regulated gene expression.
discovered the involvement of epigenetic regulation in light-regulated gene expression
Recent genomic studies support involvement of epigenetic regulation in light-regulated gene expression.
discovered the involvement of epigenetic regulation in light-regulated gene expression
Recent genomic studies support involvement of epigenetic regulation in light-regulated gene expression.
discovered the involvement of epigenetic regulation in light-regulated gene expression
Approval Evidence
1 source1 linked approval claimfirst-pass slug plant-transcriptome-profiling
recent genomic studies have revealed massive reprogramming of plant transcriptomes by light
Source:
review scope summarysupports
Recent genomic studies indicate that light causes massive reprogramming of plant transcriptomes.
recent genomic studies have revealed massive reprogramming of plant transcriptomes by light
Source:
Comparisons
Source-backed strengths
The main strength supported by the evidence is transcriptome-wide scope, enabling detection of massive light-driven reprogramming rather than single-gene effects. The review further indicates that genomic studies can connect expression changes with epigenetic regulation and genome-wide binding of pivotal light-signaling transcription factors.
Compared with CLARITY technology
plant transcriptome profiling and CLARITY technology address a similar problem space.
Shared frame: same top-level item type; same primary input modality: light
Compared with Langendorff perfused heart electrical recordings
plant transcriptome profiling and Langendorff perfused heart electrical recordings address a similar problem space.
Shared frame: same top-level item type; same primary input modality: light
Compared with native green gel system
plant transcriptome profiling and native green gel system address a similar problem space.
Shared frame: same top-level item type; same primary input modality: light
Ranked Citations
- 1.