Toolkit/two-dimensional transient absorption

two-dimensional transient absorption

Assay Method·Research·Since 2014

Also known as: 2D-TA

Taxonomy: Technique Branch / Method. Workflows sit above the mechanism and technique branches rather than replacing them.

Summary

Two-dimensional transient absorption (2D-TA) is a transient absorption spectroscopy assay used with a streak camera to search for short-lived photochemical intermediates in LOV domain photocycles. In the cited study, it was applied extensively and did not detect an intermediate with a rate constant between fluorescence decay and triplet-state decay.

Usefulness & Problems

Why this is useful

This method is useful for interrogating whether transient photochemical intermediates arise during LOV domain photocycling. The cited evidence supports its use as a negative-screening assay for intermediates in a kinetic window bounded by fluorescence decay and triplet-state decay.

Problem solved

2D-TA addresses the problem of testing for elusive radical or other transient intermediates in LOV domain photocycles. In the cited work, it was specifically used to search for an intermediate with kinetics between fluorescence decay and triplet-state decay.

Taxonomy & Function

Primary hierarchy

Technique Branch

Method: A concrete measurement method used to characterize an engineered system.

Target processes

No target processes tagged yet.

Implementation Constraints

cofactor dependency: cofactor requirement unknownencoding mode: genetically encodedimplementation constraint: context specific validationoperating role: sensor

The assay was implemented as two-dimensional transient absorption with a streak camera. The available evidence does not specify construct design, cofactors, illumination conditions, or sample preparation parameters.

The cited evidence reports non-detection of a transient intermediate rather than positive identification of a species. No details are provided here on sensitivity, spectral range, temporal resolution, sample requirements, or performance outside LOV domains.

Validation

Cell-freeBacteriaMammalianMouseHumanTherapeuticIndep. Replication

Supporting Sources

Ranked Claims

Claim 1negative detectionsupports2014Source 1needs review

Two-dimensional transient absorption did not detect a transient intermediate with a rate constant between fluorescence decay and triplet-state decay in LOV domains.

However, no transient with a rate constant between the decay of fluorescence and the decay of the triplet state could be detected.
Claim 2negative detectionsupports2014Source 1needs review

Two-dimensional transient absorption did not detect a transient intermediate with a rate constant between fluorescence decay and triplet-state decay in LOV domains.

However, no transient with a rate constant between the decay of fluorescence and the decay of the triplet state could be detected.
Claim 3negative detectionsupports2014Source 1needs review

Two-dimensional transient absorption did not detect a transient intermediate with a rate constant between fluorescence decay and triplet-state decay in LOV domains.

However, no transient with a rate constant between the decay of fluorescence and the decay of the triplet state could be detected.
Claim 4negative detectionsupports2014Source 1needs review

Two-dimensional transient absorption did not detect a transient intermediate with a rate constant between fluorescence decay and triplet-state decay in LOV domains.

However, no transient with a rate constant between the decay of fluorescence and the decay of the triplet state could be detected.
Claim 5negative detectionsupports2014Source 1needs review

Two-dimensional transient absorption did not detect a transient intermediate with a rate constant between fluorescence decay and triplet-state decay in LOV domains.

However, no transient with a rate constant between the decay of fluorescence and the decay of the triplet state could be detected.
Claim 6negative detectionsupports2014Source 1needs review

Two-dimensional transient absorption did not detect a transient intermediate with a rate constant between fluorescence decay and triplet-state decay in LOV domains.

However, no transient with a rate constant between the decay of fluorescence and the decay of the triplet state could be detected.
Claim 7negative detectionsupports2014Source 1needs review

Two-dimensional transient absorption did not detect a transient intermediate with a rate constant between fluorescence decay and triplet-state decay in LOV domains.

However, no transient with a rate constant between the decay of fluorescence and the decay of the triplet state could be detected.
Claim 8negative detectionsupports2014Source 1needs review

Two-dimensional transient absorption did not detect a transient intermediate with a rate constant between fluorescence decay and triplet-state decay in LOV domains.

However, no transient with a rate constant between the decay of fluorescence and the decay of the triplet state could be detected.
Claim 9negative detectionsupports2014Source 1needs review

Two-dimensional transient absorption did not detect a transient intermediate with a rate constant between fluorescence decay and triplet-state decay in LOV domains.

However, no transient with a rate constant between the decay of fluorescence and the decay of the triplet state could be detected.
Claim 10negative detectionsupports2014Source 1needs review

Two-dimensional transient absorption did not detect a transient intermediate with a rate constant between fluorescence decay and triplet-state decay in LOV domains.

However, no transient with a rate constant between the decay of fluorescence and the decay of the triplet state could be detected.
Claim 11negative detectionsupports2014Source 1needs review

Two-dimensional transient absorption did not detect a transient intermediate with a rate constant between fluorescence decay and triplet-state decay in LOV domains.

However, no transient with a rate constant between the decay of fluorescence and the decay of the triplet state could be detected.
Claim 12negative detectionsupports2014Source 1needs review

Two-dimensional transient absorption did not detect a transient intermediate with a rate constant between fluorescence decay and triplet-state decay in LOV domains.

However, no transient with a rate constant between the decay of fluorescence and the decay of the triplet state could be detected.
Claim 13negative detectionsupports2014Source 1needs review

Two-dimensional transient absorption did not detect a transient intermediate with a rate constant between fluorescence decay and triplet-state decay in LOV domains.

However, no transient with a rate constant between the decay of fluorescence and the decay of the triplet state could be detected.
Claim 14negative detectionsupports2014Source 1needs review

Two-dimensional transient absorption did not detect a transient intermediate with a rate constant between fluorescence decay and triplet-state decay in LOV domains.

However, no transient with a rate constant between the decay of fluorescence and the decay of the triplet state could be detected.
Claim 15negative detectionsupports2014Source 1needs review

Two-dimensional transient absorption did not detect a transient intermediate with a rate constant between fluorescence decay and triplet-state decay in LOV domains.

However, no transient with a rate constant between the decay of fluorescence and the decay of the triplet state could be detected.
Claim 16negative detectionsupports2014Source 1needs review

Two-dimensional transient absorption did not detect a transient intermediate with a rate constant between fluorescence decay and triplet-state decay in LOV domains.

However, no transient with a rate constant between the decay of fluorescence and the decay of the triplet state could be detected.
Claim 17negative detectionsupports2014Source 1needs review

Two-dimensional transient absorption did not detect a transient intermediate with a rate constant between fluorescence decay and triplet-state decay in LOV domains.

However, no transient with a rate constant between the decay of fluorescence and the decay of the triplet state could be detected.

Approval Evidence

1 source1 linked approval claimfirst-pass slug two-dimensional-transient-absorption
We performed an extensive search for these intermediates by two-dimensional transient absorption (2D-TA) with a streak camera.

Source:

negative detectionsupports

Two-dimensional transient absorption did not detect a transient intermediate with a rate constant between fluorescence decay and triplet-state decay in LOV domains.

However, no transient with a rate constant between the decay of fluorescence and the decay of the triplet state could be detected.

Source:

Comparisons

Source-backed strengths

The method was used in an extensive search for intermediates in LOV domains, indicating suitability for time-resolved photochemical interrogation. The available evidence only supports a negative finding in this application and does not provide broader performance metrics.

two-dimensional transient absorption and Field-domain rapid-scan EPR at 240 GHz address a similar problem space.

Shared frame: same top-level item type

two-dimensional transient absorption and fluorescence line narrowing address a similar problem space.

Shared frame: same top-level item type

two-dimensional transient absorption and native green gel system address a similar problem space.

Shared frame: same top-level item type

Strengths here: looks easier to implement in practice.

Ranked Citations

  1. 1.
    StructuralSource 1Photochemical & Photobiological Sciences2014Claim 12Claim 11Claim 11

    Extracted from this source document.