Toolkit/CRISPR/Cas9

CRISPR/Cas9

Multi-Component Switch·Research·Since 2015

Also known as: Cas9, CRISPR, CRISPR-Cas9, CRISPR/Cas9, CRISPR-Cas9 genome editing technique, CRISPR-Cas9 technology, multiplex CRISPR/Cas9, Type II Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR)/Cas9 genome editing system

Taxonomy: Mechanism Branch / Architecture. Workflows sit above the mechanism and technique branches rather than replacing them.

Summary

CRISPR/Cas9 is a bacterial type II genome editing system repurposed as a programmable nuclease for target DNA cleavage and site-specific genome modification. The supplied evidence states that it was engineered for gene editing in mammalian cells by 2013 and is used to interrupt gene expression through cleavage of target DNA.

Usefulness & Problems

Why this is useful

The supplied literature describes CRISPR/Cas9 as accelerating gene editing applications and expanding gene therapy from semi-random gene addition to site-specific genome modification. It is also described as a potentially powerful and effective platform in cancer therapy contexts, reflecting utility where efficient and accurate genome modification is needed.

Source:

By 2013, CRISPR/Cas9 systems had been engineered to allow gene editing in mammalian cells.

Source:

With the advent of novel programmable nucleases, such as CRISPR/Cas9, it has been possible to expand the applications of gene therapy beyond semi-random gene addition to site-specific modification of the genome

Source:

CRISPR-Cas9 can be employed to rapidly engineer immune cells and oncolytic viruses for cancer immunotherapeutic applications.

Source:

CRISPR-Cas9 has shown an unprecedented clinical potential to discover novel targets for cancer therapy and to dissect chemical-genetic interactions, providing insight into how tumours respond to drug treatment.

Problem solved

This tool addresses the problem of making targeted genomic changes rather than relying on semi-random gene addition. The evidence also indicates that it can interrupt gene expression by cleaving target DNA, providing a programmable route to gene disruption.

Source:

By 2013, CRISPR/Cas9 systems had been engineered to allow gene editing in mammalian cells.

Source:

CRISPR-Cas9 can be employed to rapidly engineer immune cells and oncolytic viruses for cancer immunotherapeutic applications.

Source:

CRISPR-Cas9 has shown an unprecedented clinical potential to discover novel targets for cancer therapy and to dissect chemical-genetic interactions, providing insight into how tumours respond to drug treatment.

Source:

Because of its high efficiency and accuracy, the CRISPR-Cas9 genome editing technique has recently emerged as a potentially powerful tool in the arsenal of cancer therapy.

Problem links

addresses the need for targeted treatments against viral infection in KSHV-associated malignancies

Literature

It is positioned as a candidate virus-directed targeted treatment where current therapies remain suboptimal.

Source:

It is positioned as a candidate virus-directed targeted treatment where current therapies remain suboptimal.

addressing limitations of CAR-T therapy in solid tumors

Literature

It is being explored to help enhance CAR-T cell specificity, improve resistance to immunosuppressive signals, and optimize in vivo functionality.

Source:

It is being explored to help enhance CAR-T cell specificity, improve resistance to immunosuppressive signals, and optimize in vivo functionality.

editing genetic material as a therapeutic strategy

Literature

It offers a route to directly edit genetic material rather than only regulating expression.

Source:

It offers a route to directly edit genetic material rather than only regulating expression.

editing mutated hemophilia genes

Literature

It addresses the goal of permanently correcting or compensating for F8 or F9 defects by precise editing or targeted cDNA integration.

Source:

It addresses the goal of permanently correcting or compensating for F8 or F9 defects by precise editing or targeted cDNA integration.

enables controlled generation of arrhythmia models beyond patient-derived backgrounds

Literature

It helps build controlled arrhythmia models and supports targeted manipulation of ion-channel determinants of electrophysiology. This expands modeling beyond only naturally patient-derived variants.

Source:

It helps build controlled arrhythmia models and supports targeted manipulation of ion-channel determinants of electrophysiology. This expands modeling beyond only naturally patient-derived variants.

enables introduction of disease-associated variants into flies for in vivo study

Literature

It helps convert human genetic findings into tractable fly models for functional study. This supports interpretation of newly discovered variants.

Source:

It helps convert human genetic findings into tractable fly models for functional study. This supports interpretation of newly discovered variants.

enables targeted DNA sequence editing with guide-directed specificity

Literature

It enables targeted genome editing and gene-function studies in poultry, including knockout-based functional genomics and trait engineering. The paper also frames it as less contentious than transgenic integration-based methods when no exogenous DNA is integrated.

Source:

It enables targeted genome editing and gene-function studies in poultry, including knockout-based functional genomics and trait engineering. The paper also frames it as less contentious than transgenic integration-based methods when no exogenous DNA is integrated.

enables targeted genetic manipulation of cells to improve tissue construct functionality

Literature

It helps make engineered cells and tissues more functional and physiologically relevant. The review frames it as a way to genetically tailor tissue constructs for regenerative medicine.

Source:

It helps make engineered cells and tissues more functional and physiologically relevant. The review frames it as a way to genetically tailor tissue constructs for regenerative medicine.

enables targeted genetic modification of HSCs

Literature

It addresses the need for targeted genetic modification of HSCs to improve antitumor therapeutic potential.

Source:

It addresses the need for targeted genetic modification of HSCs to improve antitumor therapeutic potential.

enables targeted genome modification in organoid systems

Literature

It helps enable precise modeling of human-specific pathologies and drug responses in organoids.

Source:

It helps enable precise modeling of human-specific pathologies and drug responses in organoids.

enables targeted manipulation of sex-determining genes and regulatory elements

Literature

It addresses the need for targeted manipulation of pathogenic loci or regulatory elements implicated in DSD.

Source:

It addresses the need for targeted manipulation of pathogenic loci or regulatory elements implicated in DSD.

enables targeting of root molecular pathologies underlying ischemic stroke

Literature

The review frames CRISPR-Cas9 as a way to more precisely target molecular drivers of ischemic stroke than current treatments. It is positioned as a neuroprotective strategy aimed at reducing neuronal damage and improving function.

Source:

The review frames CRISPR-Cas9 as a way to more precisely target molecular drivers of ischemic stroke than current treatments. It is positioned as a neuroprotective strategy aimed at reducing neuronal damage and improving function.

enabling stable coagulation factor expression through genome integration

Literature

It addresses the goal of permanently correcting or compensating for F8 or F9 defects by precise editing or targeted cDNA integration.

Source:

It addresses the goal of permanently correcting or compensating for F8 or F9 defects by precise editing or targeted cDNA integration.

enabling transgenic manipulation for optogenetic probe expression

Literature

It supports generation of flies expressing optogenetic probes in defined cell groups.

Source:

It supports generation of flies expressing optogenetic probes in defined cell groups.

expands treatment options in sickle cell disease gene therapy

Literature

It expands treatment options for sickle cell disease within the gene-therapy landscape.

Source:

It expands treatment options for sickle cell disease within the gene-therapy landscape.

modifying seed composition traits

Literature

It is used to improve protein quality traits and reduce antinutritional factors.

Source:

It is used to improve protein quality traits and reduce antinutritional factors.

need for precise genetic engineering tools in microalgae

Literature

It addresses the need for targeted strain modification rather than relying only on non-specific improvement methods.

Source:

It addresses the need for targeted strain modification rather than relying only on non-specific improvement methods.

proposed gene-editing intervention for central sensitization syndromes

Literature

It is proposed as a way to therapeutically edit disease-relevant biology in central sensitization syndromes. The supplied evidence does not identify a specific edited target.

Source:

It is proposed as a way to therapeutically edit disease-relevant biology in central sensitization syndromes. The supplied evidence does not identify a specific edited target.

provides an alternative gene-editing strategy for HbF modulation

Literature

It is presented as an approach used to modulate HbF expression in the context of sickle cell disease.

Source:

It is presented as an approach used to modulate HbF expression in the context of sickle cell disease.

provides a programmable gene-editing approach for PD-relevant kinase targets

Literature

It offers a programmable way to edit PD-associated genes, especially kinase-encoding targets discussed in the review. The review suggests this could accelerate neurodegenerative disease research and possibly therapy.

Source:

It offers a programmable way to edit PD-associated genes, especially kinase-encoding targets discussed in the review. The review suggests this could accelerate neurodegenerative disease research and possibly therapy.

provides more precise molecular intervention than existing stroke treatments

Literature

The review frames CRISPR-Cas9 as a way to more precisely target molecular drivers of ischemic stroke than current treatments. It is positioned as a neuroprotective strategy aimed at reducing neuronal damage and improving function.

Source:

The review frames CRISPR-Cas9 as a way to more precisely target molecular drivers of ischemic stroke than current treatments. It is positioned as a neuroprotective strategy aimed at reducing neuronal damage and improving function.

reduces design complexity relative to earlier nuclease platforms

Literature

It enables targeted genome editing and gene-function studies in poultry, including knockout-based functional genomics and trait engineering. The paper also frames it as less contentious than transgenic integration-based methods when no exogenous DNA is integrated.

Source:

It enables targeted genome editing and gene-function studies in poultry, including knockout-based functional genomics and trait engineering. The paper also frames it as less contentious than transgenic integration-based methods when no exogenous DNA is integrated.

reducing undesirable antinutritional compounds

Literature

It is used to improve protein quality traits and reduce antinutritional factors.

Source:

It is used to improve protein quality traits and reduce antinutritional factors.

supports gene delivery or engineering during CAR-T production

Literature

It contributes to improving production of engineered CAR-T cells.

Source:

It contributes to improving production of engineered CAR-T cells.

supports precise genetic intervention strategies for genetically heterogeneous RP

Literature

It addresses the need for more precise intervention in a genetically heterogeneous retinal disease. The review positions it as part of personalized medicine for RP.

Source:

It addresses the need for more precise intervention in a genetically heterogeneous retinal disease. The review positions it as part of personalized medicine for RP.

supports targeted modification of ion-channel content in iPSC-CMs

Literature

It helps build controlled arrhythmia models and supports targeted manipulation of ion-channel determinants of electrophysiology. This expands modeling beyond only naturally patient-derived variants.

Source:

It helps build controlled arrhythmia models and supports targeted manipulation of ion-channel determinants of electrophysiology. This expands modeling beyond only naturally patient-derived variants.

Published Workflows

Objective: Test whether SWCNT- or CD-based plasmid delivery by leaf infiltration can enable reporter expression and CRISPR-Cas9 editing in cowpea, a legume described as recalcitrant for transformation.

Why it works: The abstract states that plasmid DNA delivered by SWCNTs and CDs can diffuse through plant cell walls, enabling transient expression of genetic material in plant tissues.

diffusion of plasmid-loaded nanocarriers through plant cell wallstransient expression of delivered genetic materialtargeted CRISPR-Cas9 editing at PDSleaf infiltrationreporter-gene readoutCRISPR-Cas9 vector delivery

Stages

  1. 1.
    Reporter-gene delivery and transient expression test(functional_characterization)

    This stage tests whether the nanocarrier system can deliver plasmid DNA and produce observable reporter expression in cowpea leaves.

    Selection: Ability of SWCNT- or CD-based plasmid delivery to express a target gene in cowpea leaves after infiltration.

  2. 2.
    CRISPR-Cas9 delivery and editing assessment(confirmatory_validation)

    This stage tests whether the nanocarrier delivery approach extends beyond transient reporter expression to CRISPR-Cas9-mediated editing.

    Selection: Whether infiltrated CRISPR-Cas9 vectors targeting PDS produce editing outcomes in cowpea leaves.

Steps

  1. 1.
    Infiltrate cowpea leaves with SWCNT- or CD-delivered GUS reporter plasmidnanocarrier delivery harness

    Introduce a reporter plasmid into cowpea leaf tissue to test whether the delivery system can support expression.

    The abstract presents reporter-gene expression testing as the initial investigation before CRISPR-Cas9 delivery assessment.

  2. 2.
    Assess temporary GUS expression near the infiltration site by blue-color observation

    Determine whether delivered reporter plasmid is transiently expressed in the surrounding infiltrated area.

    This provides the stated readout for whether the nanocarrier delivery system achieved local expression before moving to CRISPR-Cas9 editing assessment.

  3. 3.
    Infiltrate cowpea leaves with CRISPR-Cas9 vectors targeting PDS using SWCNTs or CDsnanocarrier delivery harness

    Test whether the nanocarrier system can deliver genome-editing constructs into cowpea leaves.

    The abstract presents this as a follow-on test after reporter-gene delivery, extending the system from expression to editing.

  4. 4.
    Assess PDS editing outcomes for multiplex editing and large deletions

    Determine whether delivered CRISPR-Cas9 vectors produced target-gene knockout-associated editing outcomes.

    This is the confirmatory readout for whether nanocarrier-mediated delivery supports functional genome editing beyond transient expression.

Objective: Develop and apply a rapid plant assay to evaluate somatic genome editing efficiency and use it to optimize the ISAam1 TnpB nuclease.

Why it works: The workflow uses a hairy-root-transformation-based system that is described as simple, rapid, easy to implement, non-sterile, and able to visually identify transgenic hairy roots within two weeks, enabling practical evaluation of plant somatic editing activity.

somatic genome editing in plantsprotein engineering of ISAam1 TnpB variantshairy root transformationassay-based editor evaluationprotein engineering

Stages

  1. 1.
    Hairy-root assay system development(functional_characterization)

    To create an efficient plant evaluation system for genome editing activity given variability across editing systems and target sites.

    Selection: Establish a simple, rapid, and efficient plant system for evaluating somatic genome editing efficiency.

  2. 2.
    CRISPR/Cas9 validation of assay system(confirmatory_validation)

    To validate the newly developed assay before applying it to ISAam1 TnpB evaluation.

    Selection: Confirm the effectiveness of the hairy-root-based evaluation system using an established genome editing platform.

  3. 3.
    ISAam1 somatic editing assessment(functional_characterization)

    To evaluate the plant somatic editing performance of ISAam1 after assay validation.

    Selection: Assess somatic editing activity of ISAam1 TnpB in the validated plant assay system.

  4. 4.
    Protein engineering-based ISAam1 optimization(hit_picking)

    To optimize ISAam1 performance in plants by finding improved variants.

    Selection: Identify ISAam1 variants with enhanced somatic editing efficiency.

Steps

  1. 1.
    Develop hairy-root-transformation-based somatic editing evaluation systemassay method

    Create a simple, rapid, and efficient plant assay for somatic genome editing efficiency.

    An efficient evaluation system is needed because editing activity varies across genome editing systems and target sites in plants.

  2. 2.
    Validate the assay system using CRISPR/Cas9assay platform under validation

    Confirm that the newly developed hairy-root assay effectively reports plant genome editing activity.

    The system is validated before being applied to ISAam1 so that subsequent ISAam1 measurements are supported by an effective assay.

  3. 3.
    Assess ISAam1 somatic editing activity in the validated assayengineered nuclease evaluated in assay system

    Measure somatic editing activity of ISAam1 in plants.

    ISAam1 is tested after assay validation to evaluate its plant editing activity in a confirmed system.

  4. 4.
    Identify improved ISAam1 variants by protein engineeringparent nuclease and improved variants evaluated in assay

    Find ISAam1 variants with higher somatic editing efficiency.

    Variant optimization follows baseline ISAam1 assessment so improved versions can be identified using the established assay.

Objective: Develop sustainable microalgae-based protein production platforms by combining upstream cultivation optimization, strain modification, downstream processing, extracted-protein recovery, and biorefinery integration.

Why it works: The review frames protein production as a multi-stage engineering problem in which upstream cultivation and strain modification increase biomass and protein accumulation, while downstream processing and recovery determine product quality and application range, and biorefinery integration improves economic viability.

metabolic flux toward protein biosynthesisstrain modification for increased protein accumulationdownstream processing to improve nutritional and functional propertiesintegrated biomass valorization in protein-first recoverymixotrophic cultivationbiochemical engineeringgenetic engineeringrandom mutagenesisdryingextrusion formingfermentationcell disruption/extractionpurificationhydrolysisbiorefinery strategies

Stages

  1. 1.
    Upstream cultivation optimization(functional_characterization)

    The review states that mixotrophic cultivation is often preferred to maximize protein production and that light quality, carbon sources, and nitrogen availability direct metabolic fluxes toward protein biosynthesis.

    Selection: Optimize cultivation mode and environmental inputs to maximize protein production and biomass yield.

  2. 2.
    Strain modification(functional_characterization)

    The abstract identifies CRISPR/Cas9 as promising but still challenging and limited for enhancing microalgal protein production, while random mutagenesis is described as proven effective across multiple strains.

    Selection: Apply genetic or mutational approaches to improve strains for protein accumulation.

  3. 3.
    Whole-cell downstream processing(secondary_characterization)

    The abstract emphasizes drying, extrusion forming, and fermentation as downstream engineering approaches for improving whole-cell product properties.

    Selection: Use downstream processing methods to improve nutritional and functional properties of whole-cell microalgal protein products for food and feed.

  4. 4.
    Extracted-protein recovery and quality shaping(secondary_characterization)

    The abstract states that extracted proteins broaden potential applications and that their quality is significantly affected by cell disruption/extraction, purification, and hydrolysis methods.

    Selection: Choose extraction, purification, and hydrolysis methods that support desired quality in extracted microalgal proteins.

  5. 5.
    Protein-first biorefinery integration(decision_gate)

    The abstract states that novel biorefinery strategies enhance economic viability by integrating value-added biomass utilization within a protein-first recovery scheme.

    Selection: Integrate value-added biomass utilization around a protein-first recovery scheme to improve economic viability.

Objective: Faithfully recapitulate in vitro arrhythmogenic events in a high-throughput manner for personalized arrhythmia monitoring and drug screening.

Why it works: The review proposes that combining patient-relevant iPSC-CM models with targeted engineering, more physiologic 3D culture formats, and non-invasive high-throughput optical phenotyping can jointly improve fidelity and scalability of arrhythmia modeling.

modulation of specific ion channelsrecapitulation of arrhythmogenic electrophysiologyimproved excitation-contraction coupling relevanceiPSC-derived cardiomyocyte disease modelingCRISPR/Cas9 gene editing3D culture modelingall-optical electrophysiologyoptogenetic engineering

Stages

  1. 1.
    Establish patient-specific or engineered iPSC-CM arrhythmia models(library_design)

    The review states that traditional animal models and heterologous cell cultures do not truly reflect human cardiac electro-pathophysiology, motivating patient-specific and variant-defined iPSC-CM models.

    Selection: Use patient-specific genetic background or engineered variants to create arrhythmia-relevant iPSC-CM models.

  2. 2.
    Gene-editing-based model engineering and ion-channel modification(library_build)

    The review describes CRISPR/Cas9 as enabling patient-independent and variant-induced iPSC-CM arrhythmia models and later links gene editing to maturity improvement through ion-channel modification.

    Selection: Apply CRISPR/Cas9 or related editing to establish patient-independent or variant-induced models and modify specific ion channels.

  3. 3.
    Upgrade model format with 3D iPSC-CM culture(functional_characterization)

    The review explicitly states that novel 3D iPSC-CM models can better capture in vitro characteristics.

    Selection: Use novel 3D iPSC-CM models to better capture in vitro characteristics.

  4. 4.
    All-optical electrophysiological phenotyping for variant stratification and drug discovery(confirmatory_validation)

    The review states that all-optical platforms provide non-invasive and high-throughput electrophysiological data useful for stratification of emerging arrhythmogenic variants and drug discovery.

    Selection: Collect non-invasive, high-throughput electrophysiological data using all-optical platforms.

Objective: Generate and analyze Drosophila models carrying disease-associated epilepsy variants in order to interpret pathogenic consequences, study seizure-related phenotypes, and explore therapeutic implications.

Why it works: The review abstract describes a linked workflow in which disease-associated variants are introduced into flies, then screened for organism-level seizure-related phenotypes and drug responses, and further interrogated with optogenetic and imaging methods to trace functional alterations.

seizure inductionneuronal activity modulationmutation-associated functional alteration tracinggene editingphenotypic screeningbehavioral screeningdrug-response screeningoptogeneticscalcium imagingfluorescent imaging

Stages

  1. 1.
    Generate flies carrying disease-associated variants(library_build)

    This stage creates the fly models needed for downstream epilepsy phenotyping and functional analysis.

    Selection: Introduction of disease-associated variants into Drosophila using gene editing techniques such as CRISPR/Cas9.

  2. 2.
    Screen variant-carrying flies for seizure-related phenotypes and drug responses(broad_screen)

    This stage identifies observable consequences of disease-associated variants and potential therapeutic-response patterns.

    Selection: Phenotypic and behavioral abnormalities, shifting of seizure thresholds, and response to anti-seizure medications and other substances.

  3. 3.
    Manipulate neuronal activity and induce seizures with optogenetic tools(functional_characterization)

    This stage provides controlled perturbation of neural activity to probe seizure mechanisms beyond passive phenotype observation.

    Selection: Ability to modify neuronal activity and induce seizures using optogenetic tools.

  4. 4.
    Trace mutation-associated functional alterations with calcium and fluorescent imaging(secondary_characterization)

    This stage adds mechanistic readouts that can connect epilepsy-gene mutations to functional changes.

    Selection: Imaging-based tracing of functional alterations caused by mutations in epilepsy genes.

Objective: Generate transgenic Drosophila that express optogenetic probes in specific cell groups and use them in basic neuroscience experiments.

Why it works: The review frames Drosophila optogenetics as depending on first generating transgenic flies and then using binary expression systems to restrict probe expression to specific cells before running optogenetic experiments.

cell-specific gene expressionoptical perturbation of neural activitytransgenesisbinary expression systemsoptogenetic experimentation

Stages

  1. 1.
    Generate transgenic flies(library_build)

    The review states that transgenic techniques are crucial for Drosophila optogenetics and describes generating flies that express optogenetic probes in specific cells.

    Selection: Establish flies expressing optogenetic probes

  2. 2.
    Specify cell-targeted expression(functional_characterization)

    Binary expression systems are described specifically in the context of cell-specific gene expression techniques.

    Selection: Use binary expression systems for cell-specific gene expression

  3. 3.
    Run basic larval optogenetic experiment(confirmatory_validation)

    The review states that it presents a short and basic optogenetic experiment with Drosophila larvae as a practical example.

    Selection: Practical example of optogenetic use in Drosophila larvae

Taxonomy & Function

Primary hierarchy

Mechanism Branch

Architecture: A composed arrangement of multiple parts that instantiates one or more mechanisms.

Target processes

editingrecombinationselectiontranslation

Input: Chemical

Implementation Constraints

cofactor dependency: requires exogenous cofactorencoding mode: genetically encodedimplementation constraint: context specific validationimplementation constraint: multi component delivery burdenimplementation constraint: payload burdenoperating role: sensorswitch architecture: cleavageswitch architecture: multi component

The evidence identifies CRISPR/Cas9 as a bacterial type II CRISPR/Cas9 system engineered for use in mammalian cells. No specific construct architecture, guide design rules, delivery modality, cofactors, or expression system details are provided in the supplied text.

The supplied evidence does not provide specific quantitative performance metrics, off-target profiles, delivery constraints, or comparative limitations. Although cancer therapy and gene therapy applications are mentioned, the excerpts do not document detailed validation outcomes or boundary conditions.

Validation

Cell-freeBacteriaMammalianMouseHumanTherapeuticIndep. Replication

Supporting Sources

Ranked Claims

Claim 1clinical gapsupports2026Source 24needs review

KSHV-associated malignancies lack virus-specific targeted treatments and current clinical outcomes remain suboptimal, especially in immunocompromised patients.

Claim 2comparison scopesupports2026Source 17needs review

The review compares prime editing with CRISPR-Cas9 and Base editing as gene-editing strategies for HbF modulation.

This review also provides a comparative overview of prime editing and other gene-editing strategies for HbF modulation, such as CRISPR-Cas9 and Base editing.
Claim 3delivery requirementsupports2026Source 4needs review

Viral vectors, nanocarriers, and extracellular vesicles are described as important CRISPR delivery systems for achieving access to neural cells.

Various CRISPR delivery systems, including viral vectors, nanocarriers, and extracellular vesicles, play crucial roles in the effective access of this tool to neural cells.
Claim 4diagnostic limitationsupports2026Source 24needs review

LANA immunostaining and histopathology have important limitations in early or atypical lesions and in distinguishing latent from lytic infection.

Claim 5diagnostic standardsupports2026Source 24needs review

Histopathology and LANA immunostaining remain the diagnostic standard and gold standard for current KS diagnosis.

Claim 6engineering capabilitysupports2026Source 17needs review

Prime editing has emerged as an experimental approach capable of introducing multiple HPFH-like mutations within b3-globin promoters.

Regarding advances in b3-globin editing, "prime editing", although still in the experimental phase, has recently emerged as an innovative approach capable of introducing multiple HPFH-like mutations within b3-globin promoters...
Claim 7future promisesupports2026Source 26needs review

Promoter engineering and Prime Editing are expected to improve precision of soybean genetic modification and minimize pleiotropic effects.

The integration of new approaches, such as promoter engineering and Prime Editing, promises to further enhance the precision of genetic modifications, minimizing pleiotropic effects.
Claim 8gene editing effectsupports2026Source 26needs review

Editing SWEET10a and SWEET10b allows modulation of the soybean oil-protein balance.

the editing of sugar transporters SWEET10a and SWEET10b allows the modulation of the oil-protein balance
Claim 9gene inactivation effectsupports2026Source 26needs review

Inactivation of genes related to antinutritional factors has reduced expression of phytate and protease inhibitors in soybean.

Simultaneously, the inactivation of genes related to antinutritional factors has significantly reduced the expression of compounds such as phytate and protease inhibitors.
Claim 10gene silencing effectsupports2026Source 26needs review

Silencing negative regulatory genes such as CIF1 and AIP2 can elevate soybean seed protein content.

Recent studies demonstrate that the silencing of negative regulatory genes, such as CIF1 and AIP2, can elevate the protein content of seeds
Claim 11limitationsupports2026Source 4needs review

Targeted and safe delivery remains a persistent challenge for CRISPR-based therapy in ischemic stroke.

Despite persistent challenges in targeted and safe delivery, substantial preclinical advances, primarily in rodent models, underscore the potential for CRISPR-based therapies to transform future stroke treatment.
Claim 12mechanism activitysupports2026Source 4needs review

Reviewed studies report that CRISPR-Cas9 modulation of inflammation, oxidative stress, and cell-death pathways can prevent neuronal damage and improve neurological function in ischemic stroke contexts.

Studies have shown that the use of CRISPR-Cas9 to modulate key pathogenic pathways, including those governing inflammation, oxidative stress, and cell death, can prevent neuronal damage and improve neurological function.
Claim 13mechanism of actionsupports2026Source 16needs review

Programmable nucleases including CRISPR/Cas9, TALENs, and ZFNs induce double-stranded DNA breaks at specific sites, enabling precise correction or targeted transgene integration.

This approach involves the use of programmable nucleases (CRISPR/Cas9, TALENs, ZFNs) that induce double-stranded DNA breaks at specific sites, allowing precise correction or targeted transgene integration.
Claim 14therapeutic potentialsupports2026Source 24needs review

CRISPR-Cas9 is presented as a next-generation approach that aims to inhibit viral replication, modulate oncogenic pathways, and enhance immune responses in KSHV-associated disease.

Claim 15therapeutic rationalesupports2026Source 16needs review

Gene editing for hemophilia is presented as an emerging approach that aims to provide a permanent cure by precise correction of the mutated gene or targeted integration of coagulation factor cDNA for stable expression.

Gene editing for hemophilia is an emerging approach that aims to provide a permanent cure by editing the mutated gene precisely or targeted integration of coagulation factor cDNA into the host genome for stable expression.
Claim 16tool rolesupports2026Source 26needs review

RNAi, CRISPR/Cas9, and AlphaFold2-guided gene editing are used to modify genes involved in carbon and nitrogen metabolism and storage proteins in soybean.

This work reviews the main progress achieved through transgenesis, induced mutagenesis, and precision gene editing, highlighting the role of tools such as RNAi, CRISPR/Cas9, and AlphaFold2-guided gene editing in modifying genes involved in carbon and nitrogen metabolism and storage proteins.
Claim 17application demosupports2025Source 20needs review

AAV-based vectors including AAV8 and AAVDJ effectively delivered genes such as Lhcgr into testicular interstitial tissues and restored testosterone synthesis and fertility in mouse models.

AAV-based vectors-including AAV8 and synthetic AAVDJ-have demonstrated effective delivery of genes like Lhcgr into testicular interstitial tissues, restoring testosterone synthesis and fertility in mouse models.
Claim 18application demosupports2025Source 20needs review

Lentiviral vectors enabled stable overexpression of SOX9 or NR5A1 in hiPSCs, inducing differentiation into Sertoli-like and Leydig-like cells with partial restoration of testicular function in vitro.

Lentiviral vectors have enabled stable overexpression of transcriptional regulators (e.g., SOX9, NR5A1) in hiPSCs, inducing differentiation into Sertoli- and Leydig-like cells, with partial restoration of testicular function in vitro.
Claim 19application performancesupports2025Source 12needs review

The PaGZ-1-Aiia variant inhibited biofilm formation and disrupted established biofilms.

the PaGZ-1-Aiia variant showed significant promise in both inhibiting biofilm formation and disrupting established biofilms
Claim 20capabilitysupports2025Source 3needs review

CRISPR/Cas9-mediated gene editing enables precise genetic modification in soybean and has produced improved oil composition, increased isoflavone content, and resistance to biotic stresses.

Claim 21capabilitysupports2025Source 11needs review

Lentiviral vector-mediated gene addition and CRISPR/Cas9 gene editing offer curative potential for sickle cell disease.

Recent advances in gene therapy have transformed the therapeutic landscape of SCD, offering curative potential through techniques such as lentiviral vector-mediated gene addition and CRISPR/Cas9 gene editing.
Claim 22capabilitysupports2025Source 3needs review

Marker-assisted selection using SSRs and SNPs facilitates efficient identification and incorporation of desired soybean traits including disease resistance, abiotic stress tolerance, and improved seed quality.

Claim 23capabilitysupports2025Source 3needs review

RNA interference modulates gene expression in soybean to optimize nutritional properties and stress responses.

Claim 24challenge statementsupports2025Source 2needs review

CAR-T cell therapy has shown success in hematological malignancies but faces significant challenges in solid tumors such as colorectal cancer.

Claim 25challenge statementsupports2025Source 22needs review

Current challenges in developing heat-tolerant rice include integrating regulatory mechanisms, developing realistic heat simulation systems, validating candidate-gene functionality, and managing trait trade-offs.

Finally, we address current challenges, including integrating regulatory mechanisms, developing realistic heat simulation systems, validating the functionality of candidate genes, and managing trait trade-offs.
Claim 26challenge summarysupports2025Source 23needs review

The review identifies long-term genetic stability, scalability, and off-target effects as challenges for genetically engineered tissues.

We address the field's challenges, including long-term genetic stability, scalability, and off-target effects, while also considering the ethical implications and evolving regulatory landscape of genetically engineered tissues.
Claim 27clinical outcome summarysupports2025Source 11needs review

Clinical trial outcomes for emerging sickle cell disease gene therapies are encouraging, including reduced vaso-occlusive crises and transfusion independence.

While clinical trial outcomes are encouraging, with reduced vaso-occlusive crises and transfusion independence, major challenges remain
transfusion status transfusion independencevaso-occlusive crises reduced
Claim 28comparative advantagesupports2025Source 3needs review

These molecular breeding approaches overcome limitations of traditional methods by shortening the breeding cycle and allowing simultaneous improvement of multiple traits.

Claim 29comparative performancesupports2025Source 12needs review

The engineered PaGZ-1 phages showed superior inhibition of biofilm formation compared with the wild-type phage.

The resulting engineered phages demonstrated superior inhibition of biofilm formation compared to the wild-type phage.
Claim 30delivery tradeoffmixed2025Source 21needs review

Electroporation and other non-viral delivery methods may offer safer gene editing for HSCs but require further optimization.

Claim 31delivery tradeoffmixed2025Source 21needs review

Lentiviral vectors were the most common delivery method in the reviewed studies, but insertional mutagenesis remains a concern.

Claim 32design rationalesupports2025Source 9needs review

Plasmid-based ARG expression hinders stable in vivo expression and limits space for inserting drug-release regulatory components.

ARGs are often tested on plasmids, which hinders stable expression in vivo and limits the space for inserting components that regulate drug release.
Claim 33downstream processing rolesupports2025Source 13needs review

Drying, extrusion forming, and fermentation are emphasized as downstream engineering approaches for improving the nutritional and functional properties of whole-cell microalgal proteins for food and feed applications.

Claim 34editing outcomesupports2025Source 27needs review

Two T0 lines, HL40 and HL64, showed successful edits in all seven target genes.

Two T0 lines (HL40 and HL64) exhibited successful edits in all seven target genes, with mutations consisting of single-base insertions and deletions up to 26 bp.
edited T0 lines 2maximum indel size 26 bptarget gene count 7
Claim 35editing tradeoffmixed2025Source 21needs review

Base editing avoids the need for HDR but still faces delivery challenges in HSC applications.

Claim 36editing tradeoffmixed2025Source 21needs review

CRISPR/Cas9 provides precise editing in HSCs but is limited by low HDR efficiency in quiescent HSCs.

Claim 37effectiveness summarysupports2025Source 13needs review

Random mutagenesis has been proven effective in improving multiple microalgal strains for increased protein accumulation.

Claim 38emerging capabilitysupports2025Source 23needs review

The review describes base editing and synthetic genetic circuits as emerging technologies explored for creating smart tissues capable of dynamic environmental responses.

Emerging technologies in genetic engineering, including base editing and synthetic genetic circuits, have been explored for their potential to create "smart" tissues capable of dynamic environmental responses.
Claim 39engineering goalsupports2025Source 2needs review

The explored improvement strategies aim to enhance CAR-T cell specificity, improve resistance to immunosuppressive signals, and optimize in vivo functionality.

Claim 40engineering outcomesupports2025Source 12needs review

CRISPR-Cas9 was used to engineer the P. aeruginosa phage PaGZ-1 to express Aiia or a phage-derived depolymerase.

we then used CRISPR-Cas9 to engineer the P. aeruginosa phage PaGZ-1 to express these biofilm-disrupting genes
Claim 41engineering resultsupports2025Source 9needs review

CRISPR-Cas9-mediated genome insertion of ARGs with promoter and copy-number optimization produced ultrasound-visible engineered bacteria expressing gas vesicles from the genome.

By using CRISPR-Cas9 technology, we inserted ARGs into the genome and optimized the promoter strength and copy number for ARG expression, constructing ultrasound-visible engineered bacteria expressing gas vesicles on the genome.
Claim 42engineering strategy effectsupports2025Source 8needs review

Dual CARs, tandem CARs, SynNotch systems, and universal or inhibitory CARs expand antigen targeting and reduce off-tumor toxicity.

novel engineering strategies such as dual CARs, tandem CARs, SynNotch systems, and universal or inhibitory CARs have expanded antigen targeting and reduced off-tumor toxicity
Claim 43field progresssupports2025Source 31needs review

Emerging gene editing approaches such as CRISPR/Cas9 are expanding treatment options and moving sickle cell disease gene therapy into clinical application.

Emerging gene editing approaches such as CRISPR/Cas9 are expanding treatment options, marking the transition of SCD gene therapy from theoretical concept to clinical application.
Claim 44functional benefitsupports2025Source 21needs review

CAR-engineered HSCs showed durable tumor clearance and multilineage immune reconstitution in the reviewed preclinical evidence.

Claim 45functional capabilitysupports2025Source 20needs review

CRISPR/Cas9 has been used in vitro for gene correction or epigenetic activation, including SRY promoter demethylation in embryonic stem cells, and for targeted disruption of SOX9 enhancers in mice to model 46,XX testicular DSD.

CRISPR/Cas9 has been utilized to correct or epigenetically activate gene expression in vitro, such as SRY promoter demethylation in embryonic stem cells, and targeted disruption of SOX9 enhancers to model 46, XX testicular DSD in mice.
Claim 46functional capabilitysupports2025Source 9needs review

The constructed ultrasound-visible engineered bacteria can stably synthesize gas vesicles, output ultrasound signals, and directly carry drug plasmids for tumor therapy.

The constructed ultrasound-visible engineered bacteria can stably synthesize gas vesicles and output ultrasound signals while directly carrying drug plasmids for tumor therapy.
Claim 47functional outcomesupports2025Source 27needs review

Heterozygous alleles segregated to homozygous genotypes in T2 and this was accompanied by confirmed loss of enzymatic activity.

Heterozygous alleles segregated into homozygous genotypes in the T2 generation, accompanied by confirmed loss of enzymatic activity.
Claim 48future outlooksupports2025Source 14needs review

Emerging technologies including organoid fusion, xenografting, and optogenetics are expected to enhance understanding of cellular interactions and microenvironmental dynamics.

Claim 49implementation limitationsupports2025Source 11needs review

Major challenges for emerging sickle cell disease gene therapies include high costs, the need for myeloablative conditioning, and limited access in high-burden regions.

major challenges remain, including high costs, need for myeloablative conditioning, and limited access in high-burden regions
Claim 50integration summarysupports2025Source 23needs review

The review states that integrating genetic engineering with 3D-bioprinting, microfluidics, and smart biomaterials expands the horizons of complex tissue fabrication.

We further investigate the integration of these genetic approaches with emerging technologies such as 3D-bioprinting, microfluidics, and smart biomaterials, which collectively expand the horizons of complex tissue fabrication.
Claim 51limitation statementsupports2025Source 2needs review

Major challenges for CAR-T therapy in colorectal cancer include antigen heterogeneity, an immunosuppressive tumor microenvironment, and on-target off-tumor toxicity.

Claim 52mechanistic aimsupports2025Source 11needs review

The emerging gene-therapy approaches discussed aim to restore normal hemoglobin production or reactivate fetal hemoglobin expression.

These approaches aim to restore normal hemoglobin production or reactivate fetal hemoglobin expression.
Claim 53method applicationsupports2025Source 27needs review

Multiplex CRISPR/Cas9 was applied in Nicotiana benthamiana to simultaneously target five α-1,3-fucosyltransferase genes and two β-1,2-xylosyltransferase genes.

We applied multiplex CRISPR/Cas9 genome editing in Nicotiana benthamiana to simultaneously target five α-1,3-fucosyltransferase genes and two β-1,2-xylosyltransferase genes.
Claim 54method capabilitysupports2025Source 12needs review

The study provides a straightforward method for introducing exogenous genes into non-model P. aeruginosa phage genomes.

Our findings provide a straightforward method for introducing exogenous genes into non-model P. aeruginosa phage genomes
Claim 55modality membershipsupports2025Source 2needs review

Chimeric antigen receptor T cells, tumor-infiltrating lymphocytes, and T cell receptor-engineered T cells are key adoptive cell therapy modalities in colorectal cancer discussion.

Claim 56noveltysupports2025Source 27needs review

The work establishes the first Nicotiana benthamiana lines reported to be fully Cas9-free and homozygously edited at all seven key glycosyltransferase loci.

This work establishes the first N. benthamiana lines that are fully Cas9-free and homozygously edited at all seven key glycosyltransferase loci.
Claim 57performancesupports2025Source 3needs review

Genomic selection improves prediction accuracy for complex quantitative soybean traits such as yield by integrating genome-wide molecular markers with phenotypic data.

Claim 58performance improvementsupports2025Source 9needs review

Knocking out htrA in VNP20009 increased the maximum injection dose tenfold and tumor specificity hundredfold.

by knocking out the stress protein gene htrA in VNP20009, we increased the maximum injection dose by tenfold and the tumor specificity by a hundredfold.
maximum injection dose increase 10tumor specificity increase 100
Claim 59phenotypesupports2025Source 27needs review

T2 plants showed no detectable morphological or growth differences compared with wild-type plants.

T2 plants showed no detectable morphological or growth differences compared with wild-type plants, indicating no adverse phenotypic effects.
Claim 60preference or advantagesupports2025Source 13needs review

Mixotrophic cultivation is often preferred for maximizing microalgal protein production because it enables significantly higher biomass yields.

Claim 61production methodsupports2025Source 8needs review

Viral vectors, transposons, CRISPR/Cas9, and RNA-based electroporation are emerging gene delivery technologies that improve CAR-T production.

Emerging gene delivery technologies, including viral vectors, transposons, CRISPR/Cas9, and RNA-based electroporation, are improving CAR-T production.
Claim 62quality dependencysupports2025Source 13needs review

The quality of extracted microalgal proteins is significantly affected by the methods used for cell disruption/extraction, purification, and hydrolysis.

Claim 63review scope summarysupports2025Source 23needs review

The review examines CRISPR-Cas9, TALENs, and synthetic biology as genetic engineering approaches for modifying cellular behaviors and functions in tissue engineering.

We critically examine the application of advanced genetic engineering techniques, including CRISPR-Cas9, TALENs, and synthetic biology, in modifying cellular behaviors and functions for tissue engineering.
Claim 64review summarysupports2025Source 14needs review

Integration of genetic tools such as CRISPR-Cas9, prime editing, and lineage tracing has facilitated precise modeling of human-specific pathologies and drug responses in organoids.

Claim 65safety strategysupports2025Source 21needs review

Suicide gene strategies were effective in mitigating safety risks in the reviewed HSC engineering context.

Claim 66selection outcomesupports2025Source 27needs review

The study identified stable Cas9-free homozygous Nicotiana benthamiana lines with mutations across all targeted loci and ultimately generated 12 independent lines.

In later generations, we identified stable Cas9-free homozygous lines containing mutations across all targeted loci... Ultimately, we generated 12 independent Cas9-free, glycoengineered, homozygous lines.
independent lines generated 12target loci count 7
Claim 67strategy statementsupports2025Source 2needs review

Combinatorial approaches including immune checkpoint inhibitors, cytokines, and CRISPR/Cas9 are being explored to address CAR-T limitations in colorectal cancer.

Claim 68technology applicationsupports2025Source 22needs review

Multi-omics integration, CRISPR/Cas9 genome editing, marker-assisted selection, and rational design breeding have recent applications in enhancing heat-tolerant rice varieties.

Additionally, we summarize recent applications of cutting-edge technologies in the enhancement of heat-tolerant rice varieties, including multi-omics integration, CRISPR/Cas9 genome editing, marker-assisted selection (MAS), and rational design breeding.
Claim 69therapeutic framingsupports2025Source 5needs review

The paper frames CRISPR/Cas9 delivered by nanoparticle-based non-viral approaches as a potential nanotherapy direction for rare central sensitization syndromes.

Title: CRISPR-guided nanotherapy for rare central sensitization syndromes. Web research summary: the anchor PMC full text explicitly frames the topic around CRISPR/Cas9 as a potential CNS therapeutic modality and nanoparticle-based non-viral delivery for CRISPR.
Claim 70therapeutic outcomesupports2025Source 31needs review

Clinical trials using lentiviral vector-mediated gene insertion showed promising therapeutic outcomes by preventing hemoglobin aggregation in sickle cell disease.

Clinical trials utilizing lentiviral vector-mediated gene insertion have demonstrated promising therapeutic outcomes by preventing hemoglobin aggregation.
Claim 71tool promise with limitationsmixed2025Source 13needs review

CRISPR/Cas9 is a promising precise gene editing tool in microalgae, but its application to enhancing microalgal protein production remains challenging and limited.

Claim 72engineering capabilitysupports2023Source 10needs review

CRISPR/Cas9 is described as a convenient way to generate flies carrying disease-associated variants.

Gene editing techniques, such as CRISPR/Cas9, are a convenient way to generate flies carrying disease-associated variants.
Claim 73functional readoutsupports2023Source 10needs review

Calcium and fluorescent imaging can be used to trace functional alterations caused by mutations in epilepsy genes.

In combination with calcium and fluorescent imaging, functional alterations caused by mutations in epilepsy genes can be traced.
Claim 74phenotype descriptionsupports2023Source 10needs review

Bang-sensitive mutants respond to mechanical stimulation such as a brief vortex with stereotypic seizures and paralysis.

These flies respond to mechanical stimulation, such as a brief vortex, with stereotypic seizures and paralysis.
Claim 75screening capabilitysupports2023Source 10needs review

Variant-carrying flies can be screened for phenotypic and behavioral abnormalities, seizure-threshold shifts, and responses to anti-seizure medications and other substances.

These flies can be screened for phenotypic and behavioral abnormalities, shifting of seizure thresholds, and response to anti-seizure medications and other substances.
Claim 76precision medicine enablersupports2022Source 30needs review

Effective delivery vectors, CRISPR/Cas9 technology, and iPSC-based cell transplantation are described as accelerating personalized precision medicine in RP.

Specifically, technologies, such as effective delivery vectors, CRISPR/Cas9 technology, and iPSC-based cell transplantation, hasten the pace of personalized precision medicine in RP.
Claim 77application scopesupports2021Source 15needs review

By 2013, CRISPR/Cas9 systems had been engineered to allow gene editing in mammalian cells.

By 2013, CRISPR/Cas9 systems had been engineered to allow gene editing in mammalian cells.
Claim 78application scopesupports2021Source 15needs review

By 2013, CRISPR/Cas9 systems had been engineered to allow gene editing in mammalian cells.

By 2013, CRISPR/Cas9 systems had been engineered to allow gene editing in mammalian cells.
Claim 79application scopesupports2021Source 15needs review

By 2013, CRISPR/Cas9 systems had been engineered to allow gene editing in mammalian cells.

By 2013, CRISPR/Cas9 systems had been engineered to allow gene editing in mammalian cells.
Claim 80application scopesupports2021Source 15needs review

By 2013, CRISPR/Cas9 systems had been engineered to allow gene editing in mammalian cells.

By 2013, CRISPR/Cas9 systems had been engineered to allow gene editing in mammalian cells.
Claim 81application scopesupports2021Source 15needs review

By 2013, CRISPR/Cas9 systems had been engineered to allow gene editing in mammalian cells.

By 2013, CRISPR/Cas9 systems had been engineered to allow gene editing in mammalian cells.
Claim 82application scopesupports2021Source 15needs review

By 2013, CRISPR/Cas9 systems had been engineered to allow gene editing in mammalian cells.

By 2013, CRISPR/Cas9 systems had been engineered to allow gene editing in mammalian cells.
Claim 83application scopesupports2021Source 15needs review

By 2013, CRISPR/Cas9 systems had been engineered to allow gene editing in mammalian cells.

By 2013, CRISPR/Cas9 systems had been engineered to allow gene editing in mammalian cells.
Claim 84capability scopesupports2021Source 18needs review

Programmable nucleases such as CRISPR/Cas9 expanded gene therapy applications from semi-random gene addition to site-specific genome modification.

With the advent of novel programmable nucleases, such as CRISPR/Cas9, it has been possible to expand the applications of gene therapy beyond semi-random gene addition to site-specific modification of the genome
Claim 85comparative advantagesupports2021Source 15needs review

CRISPR/Cas9 and related systems are described as designer nucleases of choice because of ease of design, low cytotoxicity, and increased efficiency.

The ease of design, low cytotoxicity, and increased efficiency have made CRISPR/Cas9 and its related systems the designer nucleases of choice for many.
Claim 86comparative advantagesupports2021Source 15needs review

CRISPR/Cas9 and related systems are described as designer nucleases of choice because of ease of design, low cytotoxicity, and increased efficiency.

The ease of design, low cytotoxicity, and increased efficiency have made CRISPR/Cas9 and its related systems the designer nucleases of choice for many.
Claim 87comparative advantagesupports2021Source 15needs review

CRISPR/Cas9 and related systems are described as designer nucleases of choice because of ease of design, low cytotoxicity, and increased efficiency.

The ease of design, low cytotoxicity, and increased efficiency have made CRISPR/Cas9 and its related systems the designer nucleases of choice for many.
Claim 88comparative advantagesupports2021Source 15needs review

CRISPR/Cas9 and related systems are described as designer nucleases of choice because of ease of design, low cytotoxicity, and increased efficiency.

The ease of design, low cytotoxicity, and increased efficiency have made CRISPR/Cas9 and its related systems the designer nucleases of choice for many.
Claim 89comparative advantagesupports2021Source 15needs review

CRISPR/Cas9 and related systems are described as designer nucleases of choice because of ease of design, low cytotoxicity, and increased efficiency.

The ease of design, low cytotoxicity, and increased efficiency have made CRISPR/Cas9 and its related systems the designer nucleases of choice for many.
Claim 90comparative advantagesupports2021Source 15needs review

CRISPR/Cas9 and related systems are described as designer nucleases of choice because of ease of design, low cytotoxicity, and increased efficiency.

The ease of design, low cytotoxicity, and increased efficiency have made CRISPR/Cas9 and its related systems the designer nucleases of choice for many.
Claim 91comparative advantagesupports2021Source 15needs review

CRISPR/Cas9 and related systems are described as designer nucleases of choice because of ease of design, low cytotoxicity, and increased efficiency.

The ease of design, low cytotoxicity, and increased efficiency have made CRISPR/Cas9 and its related systems the designer nucleases of choice for many.
Claim 92comparative utilitysupports2021Source 15needs review

ZFN and TALEN provided sequence-specific gene-editing capacity but their broad utility was limited by laborious nuclease design and synthesis, limited target choices, and poor editing efficiency.

While these approaches provided sequence-specific gene-editing capacity, the laborious process of designing and synthesizing recombinant nucleases to recognize a specific target sequence, combined with limited target choices and poor editing efficiency, ultimately minimized the broad utility of these systems.
Claim 93comparative utilitysupports2021Source 15needs review

ZFN and TALEN provided sequence-specific gene-editing capacity but their broad utility was limited by laborious nuclease design and synthesis, limited target choices, and poor editing efficiency.

While these approaches provided sequence-specific gene-editing capacity, the laborious process of designing and synthesizing recombinant nucleases to recognize a specific target sequence, combined with limited target choices and poor editing efficiency, ultimately minimized the broad utility of these systems.
Claim 94comparative utilitysupports2021Source 15needs review

ZFN and TALEN provided sequence-specific gene-editing capacity but their broad utility was limited by laborious nuclease design and synthesis, limited target choices, and poor editing efficiency.

While these approaches provided sequence-specific gene-editing capacity, the laborious process of designing and synthesizing recombinant nucleases to recognize a specific target sequence, combined with limited target choices and poor editing efficiency, ultimately minimized the broad utility of these systems.
Claim 95comparative utilitysupports2021Source 15needs review

ZFN and TALEN provided sequence-specific gene-editing capacity but their broad utility was limited by laborious nuclease design and synthesis, limited target choices, and poor editing efficiency.

While these approaches provided sequence-specific gene-editing capacity, the laborious process of designing and synthesizing recombinant nucleases to recognize a specific target sequence, combined with limited target choices and poor editing efficiency, ultimately minimized the broad utility of these systems.
Claim 96comparative utilitysupports2021Source 15needs review

ZFN and TALEN provided sequence-specific gene-editing capacity but their broad utility was limited by laborious nuclease design and synthesis, limited target choices, and poor editing efficiency.

While these approaches provided sequence-specific gene-editing capacity, the laborious process of designing and synthesizing recombinant nucleases to recognize a specific target sequence, combined with limited target choices and poor editing efficiency, ultimately minimized the broad utility of these systems.
Claim 97comparative utilitysupports2021Source 15needs review

ZFN and TALEN provided sequence-specific gene-editing capacity but their broad utility was limited by laborious nuclease design and synthesis, limited target choices, and poor editing efficiency.

While these approaches provided sequence-specific gene-editing capacity, the laborious process of designing and synthesizing recombinant nucleases to recognize a specific target sequence, combined with limited target choices and poor editing efficiency, ultimately minimized the broad utility of these systems.
Claim 98comparative utilitysupports2021Source 15needs review

ZFN and TALEN provided sequence-specific gene-editing capacity but their broad utility was limited by laborious nuclease design and synthesis, limited target choices, and poor editing efficiency.

While these approaches provided sequence-specific gene-editing capacity, the laborious process of designing and synthesizing recombinant nucleases to recognize a specific target sequence, combined with limited target choices and poor editing efficiency, ultimately minimized the broad utility of these systems.
Claim 99enabling method rolesupports2021Source 29needs review

Transgenic techniques are crucial for applying optogenetics in Drosophila neuroscience.

Claim 100functional rolesupports2021Source 29needs review

Gal4-UAS, LexA-lexAop, and Q-system are binary expression systems used for cell-specific gene expression in Drosophila optogenetics.

Claim 101historical functionsupports2021Source 15needs review

CRISPR and Cas proteins were identified as part of a microbial adaptive immune system that targets phage DNA to fight bacteriophage reinfection.

CRISPR and the CRISPR-associated (Cas) proteins were identified as part of the microbial adaptive immune system, by targeting phage DNA, to fight bacteriophage reinfection.
Claim 102historical functionsupports2021Source 15needs review

CRISPR and Cas proteins were identified as part of a microbial adaptive immune system that targets phage DNA to fight bacteriophage reinfection.

CRISPR and the CRISPR-associated (Cas) proteins were identified as part of the microbial adaptive immune system, by targeting phage DNA, to fight bacteriophage reinfection.
Claim 103historical functionsupports2021Source 15needs review

CRISPR and Cas proteins were identified as part of a microbial adaptive immune system that targets phage DNA to fight bacteriophage reinfection.

CRISPR and the CRISPR-associated (Cas) proteins were identified as part of the microbial adaptive immune system, by targeting phage DNA, to fight bacteriophage reinfection.
Claim 104historical functionsupports2021Source 15needs review

CRISPR and Cas proteins were identified as part of a microbial adaptive immune system that targets phage DNA to fight bacteriophage reinfection.

CRISPR and the CRISPR-associated (Cas) proteins were identified as part of the microbial adaptive immune system, by targeting phage DNA, to fight bacteriophage reinfection.
Claim 105historical functionsupports2021Source 15needs review

CRISPR and Cas proteins were identified as part of a microbial adaptive immune system that targets phage DNA to fight bacteriophage reinfection.

CRISPR and the CRISPR-associated (Cas) proteins were identified as part of the microbial adaptive immune system, by targeting phage DNA, to fight bacteriophage reinfection.
Claim 106historical functionsupports2021Source 15needs review

CRISPR and Cas proteins were identified as part of a microbial adaptive immune system that targets phage DNA to fight bacteriophage reinfection.

CRISPR and the CRISPR-associated (Cas) proteins were identified as part of the microbial adaptive immune system, by targeting phage DNA, to fight bacteriophage reinfection.
Claim 107historical functionsupports2021Source 15needs review

CRISPR and Cas proteins were identified as part of a microbial adaptive immune system that targets phage DNA to fight bacteriophage reinfection.

CRISPR and the CRISPR-associated (Cas) proteins were identified as part of the microbial adaptive immune system, by targeting phage DNA, to fight bacteriophage reinfection.
Claim 108review scope statementsupports2021Source 15needs review

The review discusses various CRISPR systems and their broad utility in genome manipulation, including how CRISPR-controlled modification of DNA repair genes has advanced understanding of genome stability mechanisms.

In this review, we discuss the various CRISPR systems and their broad utility in genome manipulation. We will explore how CRISPR-controlled modifications have advanced our understanding of the mechanisms of genome stability, using the modulation of DNA repair genes as examples.
Claim 109review scope statementsupports2021Source 15needs review

The review discusses various CRISPR systems and their broad utility in genome manipulation, including how CRISPR-controlled modification of DNA repair genes has advanced understanding of genome stability mechanisms.

In this review, we discuss the various CRISPR systems and their broad utility in genome manipulation. We will explore how CRISPR-controlled modifications have advanced our understanding of the mechanisms of genome stability, using the modulation of DNA repair genes as examples.
Claim 110review scope statementsupports2021Source 15needs review

The review discusses various CRISPR systems and their broad utility in genome manipulation, including how CRISPR-controlled modification of DNA repair genes has advanced understanding of genome stability mechanisms.

In this review, we discuss the various CRISPR systems and their broad utility in genome manipulation. We will explore how CRISPR-controlled modifications have advanced our understanding of the mechanisms of genome stability, using the modulation of DNA repair genes as examples.
Claim 111review scope statementsupports2021Source 15needs review

The review discusses various CRISPR systems and their broad utility in genome manipulation, including how CRISPR-controlled modification of DNA repair genes has advanced understanding of genome stability mechanisms.

In this review, we discuss the various CRISPR systems and their broad utility in genome manipulation. We will explore how CRISPR-controlled modifications have advanced our understanding of the mechanisms of genome stability, using the modulation of DNA repair genes as examples.
Claim 112review scope statementsupports2021Source 15needs review

The review discusses various CRISPR systems and their broad utility in genome manipulation, including how CRISPR-controlled modification of DNA repair genes has advanced understanding of genome stability mechanisms.

In this review, we discuss the various CRISPR systems and their broad utility in genome manipulation. We will explore how CRISPR-controlled modifications have advanced our understanding of the mechanisms of genome stability, using the modulation of DNA repair genes as examples.
Claim 113review scope statementsupports2021Source 15needs review

The review discusses various CRISPR systems and their broad utility in genome manipulation, including how CRISPR-controlled modification of DNA repair genes has advanced understanding of genome stability mechanisms.

In this review, we discuss the various CRISPR systems and their broad utility in genome manipulation. We will explore how CRISPR-controlled modifications have advanced our understanding of the mechanisms of genome stability, using the modulation of DNA repair genes as examples.
Claim 114review scope statementsupports2021Source 15needs review

The review discusses various CRISPR systems and their broad utility in genome manipulation, including how CRISPR-controlled modification of DNA repair genes has advanced understanding of genome stability mechanisms.

In this review, we discuss the various CRISPR systems and their broad utility in genome manipulation. We will explore how CRISPR-controlled modifications have advanced our understanding of the mechanisms of genome stability, using the modulation of DNA repair genes as examples.
Claim 115safety promisesupports2021Source 18needs review

Site-specific genome modification is presented as holding promise for safer genetic manipulation.

site-specific modification of the genome, holding the promise for safer genetic manipulation
Claim 116safety promisesupports2021Source 18needs review

Site-specific genome modification is presented as holding promise for safer genetic manipulation.

site-specific modification of the genome, holding the promise for safer genetic manipulation
Claim 117safety promisesupports2021Source 18needs review

Site-specific genome modification is presented as holding promise for safer genetic manipulation.

site-specific modification of the genome, holding the promise for safer genetic manipulation
Claim 118safety promisesupports2021Source 18needs review

Site-specific genome modification is presented as holding promise for safer genetic manipulation.

site-specific modification of the genome, holding the promise for safer genetic manipulation
Claim 119safety promisesupports2021Source 18needs review

Site-specific genome modification is presented as holding promise for safer genetic manipulation.

site-specific modification of the genome, holding the promise for safer genetic manipulation
Claim 120safety promisesupports2021Source 18needs review

Site-specific genome modification is presented as holding promise for safer genetic manipulation.

site-specific modification of the genome, holding the promise for safer genetic manipulation
Claim 121safety promisesupports2021Source 18needs review

Site-specific genome modification is presented as holding promise for safer genetic manipulation.

site-specific modification of the genome, holding the promise for safer genetic manipulation
Claim 122translation challengemixed2021Source 18needs review

Clinical translation of gene editing in human HSPCs faces current challenges despite potential advantages.

We highlight the potential advantages and the current challenges toward safe and effective clinical translation of gene editing for the treatment of hematological diseases.
Claim 123translation challengemixed2021Source 18needs review

Clinical translation of gene editing in human HSPCs faces current challenges despite potential advantages.

We highlight the potential advantages and the current challenges toward safe and effective clinical translation of gene editing for the treatment of hematological diseases.
Claim 124translation challengemixed2021Source 18needs review

Clinical translation of gene editing in human HSPCs faces current challenges despite potential advantages.

We highlight the potential advantages and the current challenges toward safe and effective clinical translation of gene editing for the treatment of hematological diseases.
Claim 125translation challengemixed2021Source 18needs review

Clinical translation of gene editing in human HSPCs faces current challenges despite potential advantages.

We highlight the potential advantages and the current challenges toward safe and effective clinical translation of gene editing for the treatment of hematological diseases.
Claim 126translation challengemixed2021Source 18needs review

Clinical translation of gene editing in human HSPCs faces current challenges despite potential advantages.

We highlight the potential advantages and the current challenges toward safe and effective clinical translation of gene editing for the treatment of hematological diseases.
Claim 127translation challengemixed2021Source 18needs review

Clinical translation of gene editing in human HSPCs faces current challenges despite potential advantages.

We highlight the potential advantages and the current challenges toward safe and effective clinical translation of gene editing for the treatment of hematological diseases.
Claim 128translation challengemixed2021Source 18needs review

Clinical translation of gene editing in human HSPCs faces current challenges despite potential advantages.

We highlight the potential advantages and the current challenges toward safe and effective clinical translation of gene editing for the treatment of hematological diseases.
Claim 129capability summarysupports2019Source 19needs review

Gene therapy can result in stable or inducible transgene expression and can allow nearly specific expression in target cells.

Claim 130capability summarysupports2019Source 19needs review

HSV-1-derived viral vectors are presented as potential tools for simultaneous delivery and expression of multiple transgene cassettes.

Claim 131mechanism summarysupports2019Source 19needs review

Cell-specific and inducible promoters allow gene products to be expressed only in specific cells and allow control of transcriptional activation.

Claim 132mechanism summarysupports2019Source 19needs review

DREADDs are presented as systems allowing spatial or temporal control of expression in CNS disease applications.

Claim 133mechanism summarysupports2019Source 19needs review

RNA interference is presented as a post-transcriptional regulation system applied to CNS diseases.

Claim 134scope summarysupports2019Source 19needs review

CRISPR/Cas9 and zinc finger proteins are included as gene-editing technologies relevant to CNS disease applications.

Claim 135adoption statussupports2018Source 28needs review

CRISPR/Cas9 rapidly became an essential component of research on apicomplexan parasites after its first reported application in this group.

this technology has rapidly become an essential component of research on apicomplexan parasites
Claim 136application scopesupports2018Source 6needs review

CRISPR-Cas9 can be used to rapidly engineer immune cells and oncolytic viruses for cancer immunotherapeutic applications.

CRISPR-Cas9 can be employed to rapidly engineer immune cells and oncolytic viruses for cancer immunotherapeutic applications.
Claim 137application scopesupports2018Source 6needs review

CRISPR-Cas9 can be used to rapidly engineer immune cells and oncolytic viruses for cancer immunotherapeutic applications.

CRISPR-Cas9 can be employed to rapidly engineer immune cells and oncolytic viruses for cancer immunotherapeutic applications.
Claim 138application scopesupports2018Source 6needs review

CRISPR-Cas9 can be used to rapidly engineer immune cells and oncolytic viruses for cancer immunotherapeutic applications.

CRISPR-Cas9 can be employed to rapidly engineer immune cells and oncolytic viruses for cancer immunotherapeutic applications.
Claim 139application scopesupports2018Source 6needs review

CRISPR-Cas9 can be used to rapidly engineer immune cells and oncolytic viruses for cancer immunotherapeutic applications.

CRISPR-Cas9 can be employed to rapidly engineer immune cells and oncolytic viruses for cancer immunotherapeutic applications.
Claim 140application scopesupports2018Source 6needs review

CRISPR-Cas9 can be used to rapidly engineer immune cells and oncolytic viruses for cancer immunotherapeutic applications.

CRISPR-Cas9 can be employed to rapidly engineer immune cells and oncolytic viruses for cancer immunotherapeutic applications.
Claim 141application scopesupports2018Source 6needs review

CRISPR-Cas9 can be used to rapidly engineer immune cells and oncolytic viruses for cancer immunotherapeutic applications.

CRISPR-Cas9 can be employed to rapidly engineer immune cells and oncolytic viruses for cancer immunotherapeutic applications.
Claim 142application scopesupports2018Source 6needs review

CRISPR-Cas9 can be used to rapidly engineer immune cells and oncolytic viruses for cancer immunotherapeutic applications.

CRISPR-Cas9 can be employed to rapidly engineer immune cells and oncolytic viruses for cancer immunotherapeutic applications.
Claim 143application scopesupports2018Source 6needs review

CRISPR-Cas9 has clinical potential for discovering novel targets for cancer therapy and dissecting chemical-genetic interactions related to tumor drug response.

CRISPR-Cas9 has shown an unprecedented clinical potential to discover novel targets for cancer therapy and to dissect chemical-genetic interactions, providing insight into how tumours respond to drug treatment.
Claim 144future potentialsupports2018Source 28needs review

New variations of CRISPR/Cas9 had not yet been implemented in apicomplexans at the time of the review, and the technology's full potential remained unrealized pending integration of new variations and innovations.

we consider new variations of CRISPR/Cas9 that have yet to be implemented in apicomplexans... the full potential of this technology is yet to be realized as new variations and innovations are integrated into the field
Claim 145genetic manipulation applicationsupports2018Source 28needs review

CRISPR/Cas9 has been used for seminal genetic manipulations of Cryptosporidium species.

highlight its use for seminal genetic manipulations of Cryptosporidium spp.
Claim 146implementation scopesupports2018Source 28needs review

The review documents implementation of CRISPR/Cas9 in apicomplexan parasites, especially Plasmodium spp. and Toxoplasma gondii.

documenting its implementation in apicomplexan parasites, especially Plasmodium spp. and Toxoplasma gondii
Claim 147screening applicationsupports2018Source 28needs review

CRISPR/Cas9 has been used for whole-genome screening of gene knockout mutants in Toxoplasma gondii.

the recent use of CRISPR/Cas9 for whole genome screening of gene knockout mutants in T. gondii
Claim 148screening applicationsupports2018Source 28needs review

CRISPR/Cas9 has been used for whole-genome screening of gene knockout mutants in Toxoplasma gondii.

the recent use of CRISPR/Cas9 for whole genome screening of gene knockout mutants in T. gondii
Claim 149screening applicationsupports2018Source 28needs review

CRISPR/Cas9 has been used for whole-genome screening of gene knockout mutants in Toxoplasma gondii.

the recent use of CRISPR/Cas9 for whole genome screening of gene knockout mutants in T. gondii
Claim 150screening applicationsupports2018Source 28needs review

CRISPR/Cas9 has been used for whole-genome screening of gene knockout mutants in Toxoplasma gondii.

the recent use of CRISPR/Cas9 for whole genome screening of gene knockout mutants in T. gondii
Claim 151screening applicationsupports2018Source 28needs review

CRISPR/Cas9 has been used for whole-genome screening of gene knockout mutants in Toxoplasma gondii.

the recent use of CRISPR/Cas9 for whole genome screening of gene knockout mutants in T. gondii
Claim 152screening applicationsupports2018Source 28needs review

CRISPR/Cas9 has been used for whole-genome screening of gene knockout mutants in Toxoplasma gondii.

the recent use of CRISPR/Cas9 for whole genome screening of gene knockout mutants in T. gondii
Claim 153screening applicationsupports2018Source 28needs review

CRISPR/Cas9 has been used for whole-genome screening of gene knockout mutants in Toxoplasma gondii.

the recent use of CRISPR/Cas9 for whole genome screening of gene knockout mutants in T. gondii
Claim 154therapeutic potentialsupports2018Source 6needs review

CRISPR-Cas9 is presented as a potentially powerful tool for cancer therapy.

Because of its high efficiency and accuracy, the CRISPR-Cas9 genome editing technique has recently emerged as a potentially powerful tool in the arsenal of cancer therapy.
Claim 155translational challengesupports2018Source 6needs review

Important considerations and major challenges remain to be addressed before CRISPR/Cas9 can be clinically translated for cancer, a complex and polygenic disease.

In this review, we discuss important considerations for the use of CRISPR/Cas9 in therapeutic settings and major challenges that will need to be addressed prior to its clinical translation for a complex and polygenic disease such as cancer.
Claim 156capability summarysupports2017Source 25needs review

Targetable DNA-binding systems such as CRISPR/Cas9 and sensor-actuator devices enable precise control of complex cellular behaviors with high spatial and temporal resolution.

The invention of new research tools, including targetable DNA-binding systems such as CRISPR/Cas9 and sensor-actuator devices that can recognize and respond to diverse chemical, mechanical, and optical inputs, has enabled precise control of complex cellular behaviors at unprecedented spatial and temporal resolution.
Claim 157capability summarysupports2017Source 25needs review

Targetable DNA-binding systems such as CRISPR/Cas9 and sensor-actuator devices enable precise control of complex cellular behaviors with high spatial and temporal resolution.

The invention of new research tools, including targetable DNA-binding systems such as CRISPR/Cas9 and sensor-actuator devices that can recognize and respond to diverse chemical, mechanical, and optical inputs, has enabled precise control of complex cellular behaviors at unprecedented spatial and temporal resolution.
Claim 158capability summarysupports2017Source 25needs review

Targetable DNA-binding systems such as CRISPR/Cas9 and sensor-actuator devices enable precise control of complex cellular behaviors with high spatial and temporal resolution.

The invention of new research tools, including targetable DNA-binding systems such as CRISPR/Cas9 and sensor-actuator devices that can recognize and respond to diverse chemical, mechanical, and optical inputs, has enabled precise control of complex cellular behaviors at unprecedented spatial and temporal resolution.
Claim 159capability summarysupports2017Source 25needs review

Targetable DNA-binding systems such as CRISPR/Cas9 and sensor-actuator devices enable precise control of complex cellular behaviors with high spatial and temporal resolution.

The invention of new research tools, including targetable DNA-binding systems such as CRISPR/Cas9 and sensor-actuator devices that can recognize and respond to diverse chemical, mechanical, and optical inputs, has enabled precise control of complex cellular behaviors at unprecedented spatial and temporal resolution.
Claim 160capability summarysupports2017Source 25needs review

Targetable DNA-binding systems such as CRISPR/Cas9 and sensor-actuator devices enable precise control of complex cellular behaviors with high spatial and temporal resolution.

The invention of new research tools, including targetable DNA-binding systems such as CRISPR/Cas9 and sensor-actuator devices that can recognize and respond to diverse chemical, mechanical, and optical inputs, has enabled precise control of complex cellular behaviors at unprecedented spatial and temporal resolution.
Claim 161capability summarysupports2017Source 25needs review

Targetable DNA-binding systems such as CRISPR/Cas9 and sensor-actuator devices enable precise control of complex cellular behaviors with high spatial and temporal resolution.

The invention of new research tools, including targetable DNA-binding systems such as CRISPR/Cas9 and sensor-actuator devices that can recognize and respond to diverse chemical, mechanical, and optical inputs, has enabled precise control of complex cellular behaviors at unprecedented spatial and temporal resolution.
Claim 162capability summarysupports2017Source 25needs review

Targetable DNA-binding systems such as CRISPR/Cas9 and sensor-actuator devices enable precise control of complex cellular behaviors with high spatial and temporal resolution.

The invention of new research tools, including targetable DNA-binding systems such as CRISPR/Cas9 and sensor-actuator devices that can recognize and respond to diverse chemical, mechanical, and optical inputs, has enabled precise control of complex cellular behaviors at unprecedented spatial and temporal resolution.
Claim 163field enabling technology summarysupports2017Source 25needs review

Improvements in DNA sequencing and synthesis have expanded the set of genetic components available for programming mammalian cell biology.

Continued improvements in the capacity to sequence and synthesize DNA have rapidly increased our understanding of mechanisms of gene function and regulation on a genome-wide scale and have expanded the set of genetic components available for programming cell biology.
Claim 164field enabling technology summarysupports2017Source 25needs review

Improvements in DNA sequencing and synthesis have expanded the set of genetic components available for programming mammalian cell biology.

Continued improvements in the capacity to sequence and synthesize DNA have rapidly increased our understanding of mechanisms of gene function and regulation on a genome-wide scale and have expanded the set of genetic components available for programming cell biology.
Claim 165field enabling technology summarysupports2017Source 25needs review

Improvements in DNA sequencing and synthesis have expanded the set of genetic components available for programming mammalian cell biology.

Continued improvements in the capacity to sequence and synthesize DNA have rapidly increased our understanding of mechanisms of gene function and regulation on a genome-wide scale and have expanded the set of genetic components available for programming cell biology.
Claim 166field enabling technology summarysupports2017Source 25needs review

Improvements in DNA sequencing and synthesis have expanded the set of genetic components available for programming mammalian cell biology.

Continued improvements in the capacity to sequence and synthesize DNA have rapidly increased our understanding of mechanisms of gene function and regulation on a genome-wide scale and have expanded the set of genetic components available for programming cell biology.
Claim 167field enabling technology summarysupports2017Source 25needs review

Improvements in DNA sequencing and synthesis have expanded the set of genetic components available for programming mammalian cell biology.

Continued improvements in the capacity to sequence and synthesize DNA have rapidly increased our understanding of mechanisms of gene function and regulation on a genome-wide scale and have expanded the set of genetic components available for programming cell biology.
Claim 168field enabling technology summarysupports2017Source 25needs review

Improvements in DNA sequencing and synthesis have expanded the set of genetic components available for programming mammalian cell biology.

Continued improvements in the capacity to sequence and synthesize DNA have rapidly increased our understanding of mechanisms of gene function and regulation on a genome-wide scale and have expanded the set of genetic components available for programming cell biology.
Claim 169field enabling technology summarysupports2017Source 25needs review

Improvements in DNA sequencing and synthesis have expanded the set of genetic components available for programming mammalian cell biology.

Continued improvements in the capacity to sequence and synthesize DNA have rapidly increased our understanding of mechanisms of gene function and regulation on a genome-wide scale and have expanded the set of genetic components available for programming cell biology.
Claim 170field expansion summarysupports2017Source 25needs review

These tools were critical for extending synthetic biology techniques from prokaryotic and lower eukaryotic hosts to mammalian systems.

These tools have been critical for the expansion of synthetic biology techniques from prokaryotic and lower eukaryotic hosts to mammalian systems.
Claim 171field expansion summarysupports2017Source 25needs review

These tools were critical for extending synthetic biology techniques from prokaryotic and lower eukaryotic hosts to mammalian systems.

These tools have been critical for the expansion of synthetic biology techniques from prokaryotic and lower eukaryotic hosts to mammalian systems.
Claim 172field expansion summarysupports2017Source 25needs review

These tools were critical for extending synthetic biology techniques from prokaryotic and lower eukaryotic hosts to mammalian systems.

These tools have been critical for the expansion of synthetic biology techniques from prokaryotic and lower eukaryotic hosts to mammalian systems.
Claim 173field expansion summarysupports2017Source 25needs review

These tools were critical for extending synthetic biology techniques from prokaryotic and lower eukaryotic hosts to mammalian systems.

These tools have been critical for the expansion of synthetic biology techniques from prokaryotic and lower eukaryotic hosts to mammalian systems.
Claim 174field expansion summarysupports2017Source 25needs review

These tools were critical for extending synthetic biology techniques from prokaryotic and lower eukaryotic hosts to mammalian systems.

These tools have been critical for the expansion of synthetic biology techniques from prokaryotic and lower eukaryotic hosts to mammalian systems.
Claim 175field expansion summarysupports2017Source 25needs review

These tools were critical for extending synthetic biology techniques from prokaryotic and lower eukaryotic hosts to mammalian systems.

These tools have been critical for the expansion of synthetic biology techniques from prokaryotic and lower eukaryotic hosts to mammalian systems.
Claim 176field expansion summarysupports2017Source 25needs review

These tools were critical for extending synthetic biology techniques from prokaryotic and lower eukaryotic hosts to mammalian systems.

These tools have been critical for the expansion of synthetic biology techniques from prokaryotic and lower eukaryotic hosts to mammalian systems.
Claim 177translational potential summarysupports2017Source 25needs review

Progress in genome editing, epigenome editing, and programmable genetic circuits is expanding approaches to disease prevention, diagnosis, treatment, and personalized theranostic strategies.

Recent progress in the development of genome and epigenome editing tools and in the engineering of designer cells with programmable genetic circuits is expanding approaches to prevent, diagnose, and treat disease and to establish personalized theranostic strategies for next-generation medicines.
Claim 178translational potential summarysupports2017Source 25needs review

Progress in genome editing, epigenome editing, and programmable genetic circuits is expanding approaches to disease prevention, diagnosis, treatment, and personalized theranostic strategies.

Recent progress in the development of genome and epigenome editing tools and in the engineering of designer cells with programmable genetic circuits is expanding approaches to prevent, diagnose, and treat disease and to establish personalized theranostic strategies for next-generation medicines.
Claim 179translational potential summarysupports2017Source 25needs review

Progress in genome editing, epigenome editing, and programmable genetic circuits is expanding approaches to disease prevention, diagnosis, treatment, and personalized theranostic strategies.

Recent progress in the development of genome and epigenome editing tools and in the engineering of designer cells with programmable genetic circuits is expanding approaches to prevent, diagnose, and treat disease and to establish personalized theranostic strategies for next-generation medicines.
Claim 180translational potential summarysupports2017Source 25needs review

Progress in genome editing, epigenome editing, and programmable genetic circuits is expanding approaches to disease prevention, diagnosis, treatment, and personalized theranostic strategies.

Recent progress in the development of genome and epigenome editing tools and in the engineering of designer cells with programmable genetic circuits is expanding approaches to prevent, diagnose, and treat disease and to establish personalized theranostic strategies for next-generation medicines.
Claim 181translational potential summarysupports2017Source 25needs review

Progress in genome editing, epigenome editing, and programmable genetic circuits is expanding approaches to disease prevention, diagnosis, treatment, and personalized theranostic strategies.

Recent progress in the development of genome and epigenome editing tools and in the engineering of designer cells with programmable genetic circuits is expanding approaches to prevent, diagnose, and treat disease and to establish personalized theranostic strategies for next-generation medicines.
Claim 182translational potential summarysupports2017Source 25needs review

Progress in genome editing, epigenome editing, and programmable genetic circuits is expanding approaches to disease prevention, diagnosis, treatment, and personalized theranostic strategies.

Recent progress in the development of genome and epigenome editing tools and in the engineering of designer cells with programmable genetic circuits is expanding approaches to prevent, diagnose, and treat disease and to establish personalized theranostic strategies for next-generation medicines.
Claim 183translational potential summarysupports2017Source 25needs review

Progress in genome editing, epigenome editing, and programmable genetic circuits is expanding approaches to disease prevention, diagnosis, treatment, and personalized theranostic strategies.

Recent progress in the development of genome and epigenome editing tools and in the engineering of designer cells with programmable genetic circuits is expanding approaches to prevent, diagnose, and treat disease and to establish personalized theranostic strategies for next-generation medicines.
Claim 184application scopesupports2016Source 7needs review

Possible applications of Cas9 in biomedical research and therapeutics are only beginning to be explored.

With all of these advances, we have just begun to explore the possible applications of Cas9 in biomedical research and therapeutics.
Claim 185application scopesupports2016Source 7needs review

Possible applications of Cas9 in biomedical research and therapeutics are only beginning to be explored.

With all of these advances, we have just begun to explore the possible applications of Cas9 in biomedical research and therapeutics.
Claim 186application scopesupports2016Source 7needs review

Possible applications of Cas9 in biomedical research and therapeutics are only beginning to be explored.

With all of these advances, we have just begun to explore the possible applications of Cas9 in biomedical research and therapeutics.
Claim 187application scopesupports2016Source 7needs review

Possible applications of Cas9 in biomedical research and therapeutics are only beginning to be explored.

With all of these advances, we have just begun to explore the possible applications of Cas9 in biomedical research and therapeutics.
Claim 188application scopesupports2016Source 7needs review

Possible applications of Cas9 in biomedical research and therapeutics are only beginning to be explored.

With all of these advances, we have just begun to explore the possible applications of Cas9 in biomedical research and therapeutics.
Claim 189application scopesupports2016Source 7needs review

Possible applications of Cas9 in biomedical research and therapeutics are only beginning to be explored.

With all of these advances, we have just begun to explore the possible applications of Cas9 in biomedical research and therapeutics.
Claim 190application scopesupports2016Source 7needs review

Possible applications of Cas9 in biomedical research and therapeutics are only beginning to be explored.

With all of these advances, we have just begun to explore the possible applications of Cas9 in biomedical research and therapeutics.
Claim 191broad capabilitysupports2016Source 7needs review

Cas9 is described as a powerful tool for engineering the genome in diverse organisms.

The Cas9 protein ... is emerging as a powerful tool for engineering the genome in diverse organisms.
Claim 192comparative advantagesupports2016Source 7needs review

Development of Cas9 as a tool made sequence-specific gene editing several magnitudes easier.

its development as a tool has made sequence-specific gene editing several magnitudes easier
Claim 193comparative advantagesupports2016Source 7needs review

Development of Cas9 as a tool made sequence-specific gene editing several magnitudes easier.

its development as a tool has made sequence-specific gene editing several magnitudes easier
Claim 194comparative advantagesupports2016Source 7needs review

Development of Cas9 as a tool made sequence-specific gene editing several magnitudes easier.

its development as a tool has made sequence-specific gene editing several magnitudes easier
Claim 195comparative advantagesupports2016Source 7needs review

Development of Cas9 as a tool made sequence-specific gene editing several magnitudes easier.

its development as a tool has made sequence-specific gene editing several magnitudes easier
Claim 196comparative advantagesupports2016Source 7needs review

Development of Cas9 as a tool made sequence-specific gene editing several magnitudes easier.

its development as a tool has made sequence-specific gene editing several magnitudes easier
Claim 197comparative advantagesupports2016Source 7needs review

Development of Cas9 as a tool made sequence-specific gene editing several magnitudes easier.

its development as a tool has made sequence-specific gene editing several magnitudes easier
Claim 198comparative advantagesupports2016Source 7needs review

Development of Cas9 as a tool made sequence-specific gene editing several magnitudes easier.

its development as a tool has made sequence-specific gene editing several magnitudes easier
Claim 199mechanism or programmabilitysupports2016Source 7needs review

Cas9 is an RNA-guided DNA endonuclease that can be reprogrammed to new target sites by changing the guide RNA sequence.

As an RNA-guided DNA endonuclease, Cas9 can be easily programmed to target new sites by altering its guide RNA sequence
Claim 200mechanism summarysupports2015Source 1needs review

CRISPR/Cas9 is described as a genome editing system that interrupts gene expression through cleavage of target DNA.

The bacterial Type II Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR)/Cas9 genome editing system is the latest method of interrupting gene expression through cleavage of target DNA.
Claim 201mechanism summarysupports2015Source 1needs review

siRNAs are described as a method for transient downregulation of target gene expression through the RNA interference pathway.

Short-interfering RNAs (siRNAs) are one method of transiently down regulating the expression of any target gene through the exploitation of the RNA interference pathway
Claim 202mechanism summarysupports2015Source 1needs review

siRNAs are described as a method for transient downregulation of target gene expression through the RNA interference pathway.

Short-interfering RNAs (siRNAs) are one method of transiently down regulating the expression of any target gene through the exploitation of the RNA interference pathway
Claim 203mechanism summarysupports2015Source 1needs review

siRNAs are described as a method for transient downregulation of target gene expression through the RNA interference pathway.

Short-interfering RNAs (siRNAs) are one method of transiently down regulating the expression of any target gene through the exploitation of the RNA interference pathway
Claim 204mechanism summarysupports2015Source 1needs review

siRNAs are described as a method for transient downregulation of target gene expression through the RNA interference pathway.

Short-interfering RNAs (siRNAs) are one method of transiently down regulating the expression of any target gene through the exploitation of the RNA interference pathway
Claim 205mechanism summarysupports2015Source 1needs review

siRNAs are described as a method for transient downregulation of target gene expression through the RNA interference pathway.

Short-interfering RNAs (siRNAs) are one method of transiently down regulating the expression of any target gene through the exploitation of the RNA interference pathway
Claim 206mechanism summarysupports2015Source 1needs review

siRNAs are described as a method for transient downregulation of target gene expression through the RNA interference pathway.

Short-interfering RNAs (siRNAs) are one method of transiently down regulating the expression of any target gene through the exploitation of the RNA interference pathway
Claim 207mechanism summarysupports2015Source 1needs review

siRNAs are described as a method for transient downregulation of target gene expression through the RNA interference pathway.

Short-interfering RNAs (siRNAs) are one method of transiently down regulating the expression of any target gene through the exploitation of the RNA interference pathway
Claim 208mechanism summarysupports2015Source 1needs review

TALENs are described as artificial systems that can be designed and constructed relatively quickly to bind practically anywhere in the genome and cleave double-stranded DNA, thereby interrupting expression of a target gene.

Transcription activator-like effector nucleases (TALENs) are artificial systems that can be designed and constructed relatively quickly to bind practically anywhere in the genome and cleave double stranded DNA, thus interrupting the expression of any given target gene
Claim 209mechanism summarysupports2015Source 1needs review

TALENs are described as artificial systems that can be designed and constructed relatively quickly to bind practically anywhere in the genome and cleave double-stranded DNA, thereby interrupting expression of a target gene.

Transcription activator-like effector nucleases (TALENs) are artificial systems that can be designed and constructed relatively quickly to bind practically anywhere in the genome and cleave double stranded DNA, thus interrupting the expression of any given target gene
Claim 210mechanism summarysupports2015Source 1needs review

TALENs are described as artificial systems that can be designed and constructed relatively quickly to bind practically anywhere in the genome and cleave double-stranded DNA, thereby interrupting expression of a target gene.

Transcription activator-like effector nucleases (TALENs) are artificial systems that can be designed and constructed relatively quickly to bind practically anywhere in the genome and cleave double stranded DNA, thus interrupting the expression of any given target gene
Claim 211mechanism summarysupports2015Source 1needs review

TALENs are described as artificial systems that can be designed and constructed relatively quickly to bind practically anywhere in the genome and cleave double-stranded DNA, thereby interrupting expression of a target gene.

Transcription activator-like effector nucleases (TALENs) are artificial systems that can be designed and constructed relatively quickly to bind practically anywhere in the genome and cleave double stranded DNA, thus interrupting the expression of any given target gene
Claim 212mechanism summarysupports2015Source 1needs review

TALENs are described as artificial systems that can be designed and constructed relatively quickly to bind practically anywhere in the genome and cleave double-stranded DNA, thereby interrupting expression of a target gene.

Transcription activator-like effector nucleases (TALENs) are artificial systems that can be designed and constructed relatively quickly to bind practically anywhere in the genome and cleave double stranded DNA, thus interrupting the expression of any given target gene
Claim 213mechanism summarysupports2015Source 1needs review

TALENs are described as artificial systems that can be designed and constructed relatively quickly to bind practically anywhere in the genome and cleave double-stranded DNA, thereby interrupting expression of a target gene.

Transcription activator-like effector nucleases (TALENs) are artificial systems that can be designed and constructed relatively quickly to bind practically anywhere in the genome and cleave double stranded DNA, thus interrupting the expression of any given target gene
Claim 214mechanism summarysupports2015Source 1needs review

TALENs are described as artificial systems that can be designed and constructed relatively quickly to bind practically anywhere in the genome and cleave double-stranded DNA, thereby interrupting expression of a target gene.

Transcription activator-like effector nucleases (TALENs) are artificial systems that can be designed and constructed relatively quickly to bind practically anywhere in the genome and cleave double stranded DNA, thus interrupting the expression of any given target gene
Claim 215performance summarysupports2015Source 1needs review

The abstract states that CRISPR/Cas9 has effectiveness at cleaving genomic DNA in mammalian cells in vitro and in vivo, exhibits specificity, and is relatively easy to construct in targeted forms.

Its effectiveness at cleaving genomic DNA in mammalian cells in vitro and in vivo [2, 3], the specificity that this system exhibits [4, 5] and the relative ease with which targeted systems can be constructed
Claim 216review scope summarysupports2015Source 1needs review

This review focuses on four common gene-therapy-related modalities used to alter gene expression: siRNAs, TALENs, ZFNs, and CRISPR/Cas9.

Within this review we focus on 4 of the more common forms of gene therapy utilised to alter gene expression; siRNAs, TALENs, ZFNs and CRISPR/Cas9.
Claim 217review scope summarysupports2015Source 1needs review

This review focuses on four common gene-therapy-related modalities used to alter gene expression: siRNAs, TALENs, ZFNs, and CRISPR/Cas9.

Within this review we focus on 4 of the more common forms of gene therapy utilised to alter gene expression; siRNAs, TALENs, ZFNs and CRISPR/Cas9.
Claim 218review scope summarysupports2015Source 1needs review

This review focuses on four common gene-therapy-related modalities used to alter gene expression: siRNAs, TALENs, ZFNs, and CRISPR/Cas9.

Within this review we focus on 4 of the more common forms of gene therapy utilised to alter gene expression; siRNAs, TALENs, ZFNs and CRISPR/Cas9.
Claim 219review scope summarysupports2015Source 1needs review

This review focuses on four common gene-therapy-related modalities used to alter gene expression: siRNAs, TALENs, ZFNs, and CRISPR/Cas9.

Within this review we focus on 4 of the more common forms of gene therapy utilised to alter gene expression; siRNAs, TALENs, ZFNs and CRISPR/Cas9.
Claim 220review scope summarysupports2015Source 1needs review

This review focuses on four common gene-therapy-related modalities used to alter gene expression: siRNAs, TALENs, ZFNs, and CRISPR/Cas9.

Within this review we focus on 4 of the more common forms of gene therapy utilised to alter gene expression; siRNAs, TALENs, ZFNs and CRISPR/Cas9.
Claim 221review scope summarysupports2015Source 1needs review

This review focuses on four common gene-therapy-related modalities used to alter gene expression: siRNAs, TALENs, ZFNs, and CRISPR/Cas9.

Within this review we focus on 4 of the more common forms of gene therapy utilised to alter gene expression; siRNAs, TALENs, ZFNs and CRISPR/Cas9.
Claim 222review scope summarysupports2015Source 1needs review

This review focuses on four common gene-therapy-related modalities used to alter gene expression: siRNAs, TALENs, ZFNs, and CRISPR/Cas9.

Within this review we focus on 4 of the more common forms of gene therapy utilised to alter gene expression; siRNAs, TALENs, ZFNs and CRISPR/Cas9.

Approval Evidence

31 sources69 linked approval claimsfirst-pass slug crispr-cas9
Studies have shown that the use of CRISPR-Cas9 to modulate key pathogenic pathways, including those governing inflammation, oxidative stress, and cell death, can prevent neuronal damage and improve neurological function.

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This approach involves the use of programmable nucleases (CRISPR/Cas9, TALENs, ZFNs) that induce double-stranded DNA breaks at specific sites, allowing precise correction or targeted transgene integration.

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This review also provides a comparative overview of prime editing and other gene-editing strategies for HbF modulation, such as CRISPR-Cas9 and Base editing.

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Next-generation approaches, such as CRISPR-Cas9 and therapeutic aptamers, aim to inhibit viral replication, modulate oncogenic pathways, and enhance immune responses.

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This work reviews the main progress achieved through transgenesis, induced mutagenesis, and precision gene editing, highlighting the role of tools such as RNAi, CRISPR/Cas9, and AlphaFold2-guided gene editing...

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To address these limitations, combinatorial approaches, such as immune checkpoint inhibitors, cytokines, and advanced gene-editing tools like CRISPR/Cas9, are being actively explored.

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Emerging gene delivery technologies, including viral vectors, transposons, CRISPR/Cas9, and RNA-based electroporation, are improving CAR-T production.

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In contrast, the third generation Clustered Regularly Interspaced Short Palindromic Repeats/CRISPR-associated protein 9 (CRISPR/Cas9), represents a significant breakthrough. It encompasses guided RNA (gRNA) and the Cas9 endonuclease which together target specific DNA sequences and induces double-strand breaks...

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The upstream web research summary states that the anchor PMC text explicitly mentions CRISPR/Cas9 and frames CRISPR/Cas9 as a potential CNS therapeutic modality.

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In the field of genetic engineering, precise gene editing tools, especially CRISPR/Cas9, have demonstrated considerable promise, although the application in enhancing microalgal protein production remains challenging and limited.

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This review highlights the progression of organoid technologies, emphasizing the integration of genetic tools, including CRISPR-Cas9, prime editing, and lineage tracing.

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Advances in gene-editing technologies, such as CRISPR/Cas9 and lentiviral vectors, have enabled the modification of HSCs to enhance their therapeutic potential... CRISPR/Cas9 offered precise editing but faced challenges with low homology-directed repair (HDR) efficiency in quiescent HSCs.

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clinical gapsupports

KSHV-associated malignancies lack virus-specific targeted treatments and current clinical outcomes remain suboptimal, especially in immunocompromised patients.

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comparison scopesupports

The review compares prime editing with CRISPR-Cas9 and Base editing as gene-editing strategies for HbF modulation.

This review also provides a comparative overview of prime editing and other gene-editing strategies for HbF modulation, such as CRISPR-Cas9 and Base editing.

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gene editing effectsupports

Editing SWEET10a and SWEET10b allows modulation of the soybean oil-protein balance.

the editing of sugar transporters SWEET10a and SWEET10b allows the modulation of the oil-protein balance

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gene inactivation effectsupports

Inactivation of genes related to antinutritional factors has reduced expression of phytate and protease inhibitors in soybean.

Simultaneously, the inactivation of genes related to antinutritional factors has significantly reduced the expression of compounds such as phytate and protease inhibitors.

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mechanism activitysupports

Reviewed studies report that CRISPR-Cas9 modulation of inflammation, oxidative stress, and cell-death pathways can prevent neuronal damage and improve neurological function in ischemic stroke contexts.

Studies have shown that the use of CRISPR-Cas9 to modulate key pathogenic pathways, including those governing inflammation, oxidative stress, and cell death, can prevent neuronal damage and improve neurological function.

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mechanism of actionsupports

Programmable nucleases including CRISPR/Cas9, TALENs, and ZFNs induce double-stranded DNA breaks at specific sites, enabling precise correction or targeted transgene integration.

This approach involves the use of programmable nucleases (CRISPR/Cas9, TALENs, ZFNs) that induce double-stranded DNA breaks at specific sites, allowing precise correction or targeted transgene integration.

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therapeutic potentialsupports

CRISPR-Cas9 is presented as a next-generation approach that aims to inhibit viral replication, modulate oncogenic pathways, and enhance immune responses in KSHV-associated disease.

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therapeutic rationalesupports

Gene editing for hemophilia is presented as an emerging approach that aims to provide a permanent cure by precise correction of the mutated gene or targeted integration of coagulation factor cDNA for stable expression.

Gene editing for hemophilia is an emerging approach that aims to provide a permanent cure by editing the mutated gene precisely or targeted integration of coagulation factor cDNA into the host genome for stable expression.

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tool rolesupports

RNAi, CRISPR/Cas9, and AlphaFold2-guided gene editing are used to modify genes involved in carbon and nitrogen metabolism and storage proteins in soybean.

This work reviews the main progress achieved through transgenesis, induced mutagenesis, and precision gene editing, highlighting the role of tools such as RNAi, CRISPR/Cas9, and AlphaFold2-guided gene editing in modifying genes involved in carbon and nitrogen metabolism and storage proteins.

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application scopesupports

The paper states that CRISPR/Cas9 in poultry has applications in disease resistance, productivity traits, in-ovo sexing, reproductive trait control, biopharming, and functional genomics.

CRISPR/Cas9 has diverse applications in poultry, including enhancing disease resistance to avian influenza and Marek's disease, improving productivity traits such as growth, feed efficiency, and egg-laying, and enabling early in-ovo sexing ... It also allows control of reproductive traits for breeding management, supports bio-pharming by producing therapeutic proteins or vaccines in eggs, and facilitates functional genomics...

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capabilitysupports

CRISPR/Cas9 enables functional analysis of non-coding elements such as enhancers and insulators in addition to gene knockout.

Beyond gene knockout, CRISPR/Cas9 enables functional analysis of non-coding elements such as enhancers and insulators.

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challenge summarysupports

The review identifies long-term genetic stability, scalability, and off-target effects as challenges for genetically engineered tissues.

We address the field's challenges, including long-term genetic stability, scalability, and off-target effects, while also considering the ethical implications and evolving regulatory landscape of genetically engineered tissues.

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comparisonsupports

Zinc finger nucleases and TALENs are limited by complex design and off-target effects relative to CRISPR/Cas9.

First and second generation tools, such as zinc finger nucleases and transcription activator-like effector nucleases (TALENs), are limited by complex design and off-target effects. In contrast, the third generation ... CRISPR/Cas9, represents a significant breakthrough.

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delivery propertysupports

When delivered via plasmid systems, Cas9 and gRNA are transiently expressed and degrade within 48-72 hours, leaving no permanent genetic footprint.

Delivered via plasmid systems, Cas9 and gRNA are transiently expressed and degrade within 48-72 h, leaving no permanent genetic footprint.

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editing tradeoffmixed

CRISPR/Cas9 provides precise editing in HSCs but is limited by low HDR efficiency in quiescent HSCs.

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engineering goalsupports

The explored improvement strategies aim to enhance CAR-T cell specificity, improve resistance to immunosuppressive signals, and optimize in vivo functionality.

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field progresssupports

Emerging gene editing approaches such as CRISPR/Cas9 are expanding treatment options and moving sickle cell disease gene therapy into clinical application.

Emerging gene editing approaches such as CRISPR/Cas9 are expanding treatment options, marking the transition of SCD gene therapy from theoretical concept to clinical application.

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functional capabilitysupports

CRISPR/Cas9 has been used in vitro for gene correction or epigenetic activation, including SRY promoter demethylation in embryonic stem cells, and for targeted disruption of SOX9 enhancers in mice to model 46,XX testicular DSD.

CRISPR/Cas9 has been utilized to correct or epigenetically activate gene expression in vitro, such as SRY promoter demethylation in embryonic stem cells, and targeted disruption of SOX9 enhancers to model 46, XX testicular DSD in mice.

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mechanismsupports

CRISPR/Cas9 targeting specificity is achieved through gRNA-DNA base pairing and Cas9 recognition of a protospacer adjacent motif.

Targeting specificity is achieved through gRNA-DNA base pairing and recognition of a protospacer adjacent motif by Cas9.

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mechanismsupports

CRISPR/Cas9 uses gRNA and Cas9 to target specific DNA sequences and induce double-strand breaks that are often repaired by error-prone non-homologous end joining, frequently generating insertions or deletions that disrupt gene function.

It encompasses guided RNA (gRNA) and the Cas9 endonuclease which together target specific DNA sequences and induces double-strand breaks that are repaired via error-prone non-homologous end joining, frequently causing insertions or deletions that disrupt gene function.

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Comparisons

Source-stated alternatives

The abstract mentions RNAi, AlphaFold2-guided gene editing, promoter engineering, Prime Editing, transgenesis, and induced mutagenesis as alternative or complementary approaches.; The abstract mentions therapeutic aptamers, conventional chemotherapy, antiretroviral therapy, and synthetic biology-based approaches as nearby therapeutic modalities.; The abstract explicitly mentions prime editing and Base editing as alternative gene-editing strategies in the same comparison.; The abstract contrasts CRISPR/Cas9 with other programmable nuclease classes including TALENs and ZFNs.; The review also discusses broader CRISPR-based systems and multiple delivery approaches rather than Cas9 alone. Viral vectors, nanocarriers, and extracellular vesicles are presented as alternative delivery harnesses.; The abstract contrasts CRISPR/Cas9-based gene editing with lentiviral vector-mediated gene insertion and with transplantation approaches.; The abstract directly contrasts CRISPR-Cas9 with TALENs and broader synthetic biology approaches. Base editing is also presented as an emerging related genetic engineering technology.; The review also discusses TALENs, ZFNs, and viral vector-mediated delivery systems as alternative or complementary gene-therapy approaches.; The abstract contrasts CRISPR/Cas9 with base editing and with non-viral delivery approaches such as electroporation.; The abstract names prime editing and lineage tracing as adjacent genetic approaches used alongside or instead of CRISPR-Cas9 in organoid studies.; The abstract directly contrasts CRISPR/Cas9 with random mutagenesis, which is described as proven effective across multiple strains.; The web research summary identifies Cpf1 as a nearby alternative RNA-guided nuclease discussed in related delivery literature.; The source contrasts CRISPR/Cas9 with zinc finger nucleases, TALENs, lentiviral vectors, and piggyBac transposition. ZFNs and TALENs are described as limited by complex design and off-target effects, while lentiviral and piggyBac methods are associated with exogenous gene expression.; Other production technologies named alongside it are viral vectors, transposons, and RNA-based electroporation.; Other combinatorial approaches named in the abstract include immune checkpoint inhibitors and cytokines.; The review contrasts CRISPR-enabled patient-independent or variant-induced models with patient-specific iPSC-CM models that inherit the donor genetic background.; The abstract contrasts gene editing with gene therapy by stating that gene editing, in addition to gene therapy, might be a promising strategy for PD therapy.; The abstract contrasts fly model generation with rodent model establishment, but does not name an alternative editing method.; The abstract contrasts CRISPR/Cas9 with other advancing modalities including gene therapy, stem cell therapy, and optogenetics.; The abstract names zinc finger proteins as another gene-editing technology.

Source:

The abstract mentions RNAi, AlphaFold2-guided gene editing, promoter engineering, Prime Editing, transgenesis, and induced mutagenesis as alternative or complementary approaches.

Source:

The abstract mentions therapeutic aptamers, conventional chemotherapy, antiretroviral therapy, and synthetic biology-based approaches as nearby therapeutic modalities.

Source:

The abstract explicitly mentions prime editing and Base editing as alternative gene-editing strategies in the same comparison.

Source:

The abstract contrasts CRISPR/Cas9 with other programmable nuclease classes including TALENs and ZFNs.

Source:

The review also discusses broader CRISPR-based systems and multiple delivery approaches rather than Cas9 alone. Viral vectors, nanocarriers, and extracellular vesicles are presented as alternative delivery harnesses.

Source:

The abstract contrasts CRISPR/Cas9-based gene editing with lentiviral vector-mediated gene insertion and with transplantation approaches.

Source:

The abstract directly contrasts CRISPR-Cas9 with TALENs and broader synthetic biology approaches. Base editing is also presented as an emerging related genetic engineering technology.

Source:

The review also discusses TALENs, ZFNs, and viral vector-mediated delivery systems as alternative or complementary gene-therapy approaches.

Source:

The abstract contrasts CRISPR/Cas9 with base editing and with non-viral delivery approaches such as electroporation.

Source:

The abstract names prime editing and lineage tracing as adjacent genetic approaches used alongside or instead of CRISPR-Cas9 in organoid studies.

Source:

The abstract directly contrasts CRISPR/Cas9 with random mutagenesis, which is described as proven effective across multiple strains.

Source:

The web research summary identifies Cpf1 as a nearby alternative RNA-guided nuclease discussed in related delivery literature.

Source:

The source contrasts CRISPR/Cas9 with zinc finger nucleases, TALENs, lentiviral vectors, and piggyBac transposition. ZFNs and TALENs are described as limited by complex design and off-target effects, while lentiviral and piggyBac methods are associated with exogenous gene expression.

Source:

Other production technologies named alongside it are viral vectors, transposons, and RNA-based electroporation.

Source:

Other combinatorial approaches named in the abstract include immune checkpoint inhibitors and cytokines.

Source:

The review contrasts CRISPR-enabled patient-independent or variant-induced models with patient-specific iPSC-CM models that inherit the donor genetic background.

Source:

The abstract contrasts gene editing with gene therapy by stating that gene editing, in addition to gene therapy, might be a promising strategy for PD therapy.

Source:

The abstract contrasts fly model generation with rodent model establishment, but does not name an alternative editing method.

Source:

The abstract contrasts CRISPR/Cas9 with other advancing modalities including gene therapy, stem cell therapy, and optogenetics.

Source:

The abstract names zinc finger proteins as another gene-editing technology.

Source-backed strengths

The evidence attributes high efficiency and accuracy to the CRISPR-Cas9 genome editing technique and notes many advantages without detailing all of them. It was engineered for mammalian cell gene editing and is described as broadening gene therapy toward site-specific genome modification.

Source:

The ease of design, low cytotoxicity, and increased efficiency have made CRISPR/Cas9 and its related systems the designer nucleases of choice for many.

Source:

While these approaches provided sequence-specific gene-editing capacity, the laborious process of designing and synthesizing recombinant nucleases to recognize a specific target sequence, combined with limited target choices and poor editing efficiency, ultimately minimized the broad utility of these systems.

Source:

its development as a tool has made sequence-specific gene editing several magnitudes easier

Source:

Its effectiveness at cleaving genomic DNA in mammalian cells in vitro and in vivo [2, 3], the specificity that this system exhibits [4, 5] and the relative ease with which targeted systems can be constructed

The review also discusses broader CRISPR-based systems and multiple delivery approaches rather than Cas9 alone. Viral vectors, nanocarriers, and extracellular vesicles are presented as alternative delivery harnesses.; Other production technologies named alongside it are viral vectors, transposons, and RNA-based electroporation.

Shared frame: source-stated alternative in extracted literature

Strengths here: presented as a precision gene-editing tool for soybean grain-quality engineering; presented as a next-generation targeted approach; programmable nuclease platform for site-specific DNA cleavage.

Relative tradeoffs: specific implementation limits are not described in the abstract; persistent challenges in targeted delivery; persistent challenges in safe delivery.

Source:

The review also discusses broader CRISPR-based systems and multiple delivery approaches rather than Cas9 alone. Viral vectors, nanocarriers, and extracellular vesicles are presented as alternative delivery harnesses.

Source:

Other production technologies named alongside it are viral vectors, transposons, and RNA-based electroporation.

Compared with base editing

The abstract explicitly mentions prime editing and Base editing as alternative gene-editing strategies in the same comparison.; The abstract directly contrasts CRISPR-Cas9 with TALENs and broader synthetic biology approaches. Base editing is also presented as an emerging related genetic engineering technology.; The abstract contrasts CRISPR/Cas9 with base editing and with non-viral delivery approaches such as electroporation.

Shared frame: source-stated alternative in extracted literature

Strengths here: presented as a precision gene-editing tool for soybean grain-quality engineering; presented as a next-generation targeted approach; programmable nuclease platform for site-specific DNA cleavage.

Relative tradeoffs: specific implementation limits are not described in the abstract; persistent challenges in targeted delivery; persistent challenges in safe delivery.

Source:

The abstract explicitly mentions prime editing and Base editing as alternative gene-editing strategies in the same comparison.

Source:

The abstract directly contrasts CRISPR-Cas9 with TALENs and broader synthetic biology approaches. Base editing is also presented as an emerging related genetic engineering technology.

Source:

The abstract contrasts CRISPR/Cas9 with base editing and with non-viral delivery approaches such as electroporation.

Compared with CRISPR/Cas9 system

The abstract contrasts CRISPR/Cas9 with other programmable nuclease classes including TALENs and ZFNs.; The review also discusses broader CRISPR-based systems and multiple delivery approaches rather than Cas9 alone. Viral vectors, nanocarriers, and extracellular vesicles are presented as alternative delivery harnesses.; The abstract contrasts CRISPR/Cas9-based gene editing with lentiviral vector-mediated gene insertion and with transplantation approaches.; The abstract directly contrasts CRISPR-Cas9 with TALENs and broader synthetic biology approaches. Base editing is also presented as an emerging related genetic engineering technology.; The abstract contrasts CRISPR/Cas9 with base editing and with non-viral delivery approaches such as electroporation.; The abstract names prime editing and lineage tracing as adjacent genetic approaches used alongside or instead of CRISPR-Cas9 in organoid studies.; The abstract directly contrasts CRISPR/Cas9 with random mutagenesis, which is described as proven effective across multiple strains.; The source contrasts CRISPR/Cas9 with zinc finger nucleases, TALENs, lentiviral vectors, and piggyBac transposition. ZFNs and TALENs are described as limited by complex design and off-target effects, while lentiviral and piggyBac methods are associated with exogenous gene expression.; The review contrasts CRISPR-enabled patient-independent or variant-induced models with patient-specific iPSC-CM models that inherit the donor genetic background.; The abstract contrasts CRISPR/Cas9 with other advancing modalities including gene therapy, stem cell therapy, and optogenetics.

Shared frame: source-stated alternative in extracted literature

Strengths here: presented as a precision gene-editing tool for soybean grain-quality engineering; presented as a next-generation targeted approach; programmable nuclease platform for site-specific DNA cleavage.

Relative tradeoffs: specific implementation limits are not described in the abstract; persistent challenges in targeted delivery; persistent challenges in safe delivery.

Source:

The abstract contrasts CRISPR/Cas9 with other programmable nuclease classes including TALENs and ZFNs.

Source:

The review also discusses broader CRISPR-based systems and multiple delivery approaches rather than Cas9 alone. Viral vectors, nanocarriers, and extracellular vesicles are presented as alternative delivery harnesses.

Source:

The abstract contrasts CRISPR/Cas9-based gene editing with lentiviral vector-mediated gene insertion and with transplantation approaches.

Source:

The abstract directly contrasts CRISPR-Cas9 with TALENs and broader synthetic biology approaches. Base editing is also presented as an emerging related genetic engineering technology.

Source:

The abstract contrasts CRISPR/Cas9 with base editing and with non-viral delivery approaches such as electroporation.

Source:

The abstract names prime editing and lineage tracing as adjacent genetic approaches used alongside or instead of CRISPR-Cas9 in organoid studies.

Source:

The abstract directly contrasts CRISPR/Cas9 with random mutagenesis, which is described as proven effective across multiple strains.

Source:

The source contrasts CRISPR/Cas9 with zinc finger nucleases, TALENs, lentiviral vectors, and piggyBac transposition. ZFNs and TALENs are described as limited by complex design and off-target effects, while lentiviral and piggyBac methods are associated with exogenous gene expression.

Source:

The review contrasts CRISPR-enabled patient-independent or variant-induced models with patient-specific iPSC-CM models that inherit the donor genetic background.

Source:

The abstract contrasts CRISPR/Cas9 with other advancing modalities including gene therapy, stem cell therapy, and optogenetics.

Compared with Exosomes

The review also discusses broader CRISPR-based systems and multiple delivery approaches rather than Cas9 alone. Viral vectors, nanocarriers, and extracellular vesicles are presented as alternative delivery harnesses.

Shared frame: source-stated alternative in extracted literature

Strengths here: presented as a precision gene-editing tool for soybean grain-quality engineering; presented as a next-generation targeted approach; programmable nuclease platform for site-specific DNA cleavage.

Relative tradeoffs: specific implementation limits are not described in the abstract; persistent challenges in targeted delivery; persistent challenges in safe delivery.

Source:

The review also discusses broader CRISPR-based systems and multiple delivery approaches rather than Cas9 alone. Viral vectors, nanocarriers, and extracellular vesicles are presented as alternative delivery harnesses.

The review also discusses broader CRISPR-based systems and multiple delivery approaches rather than Cas9 alone. Viral vectors, nanocarriers, and extracellular vesicles are presented as alternative delivery harnesses.

Shared frame: source-stated alternative in extracted literature

Strengths here: presented as a precision gene-editing tool for soybean grain-quality engineering; presented as a next-generation targeted approach; programmable nuclease platform for site-specific DNA cleavage.

Relative tradeoffs: specific implementation limits are not described in the abstract; persistent challenges in targeted delivery; persistent challenges in safe delivery.

Source:

The review also discusses broader CRISPR-based systems and multiple delivery approaches rather than Cas9 alone. Viral vectors, nanocarriers, and extracellular vesicles are presented as alternative delivery harnesses.

Compared with gene therapy

The abstract contrasts gene editing with gene therapy by stating that gene editing, in addition to gene therapy, might be a promising strategy for PD therapy.; The abstract contrasts CRISPR/Cas9 with other advancing modalities including gene therapy, stem cell therapy, and optogenetics.

Shared frame: source-stated alternative in extracted literature

Strengths here: presented as a precision gene-editing tool for soybean grain-quality engineering; presented as a next-generation targeted approach; programmable nuclease platform for site-specific DNA cleavage.

Relative tradeoffs: specific implementation limits are not described in the abstract; persistent challenges in targeted delivery; persistent challenges in safe delivery.

Source:

The abstract contrasts gene editing with gene therapy by stating that gene editing, in addition to gene therapy, might be a promising strategy for PD therapy.

Source:

The abstract contrasts CRISPR/Cas9 with other advancing modalities including gene therapy, stem cell therapy, and optogenetics.

Compared with lipid nanoparticles

The review also discusses broader CRISPR-based systems and multiple delivery approaches rather than Cas9 alone. Viral vectors, nanocarriers, and extracellular vesicles are presented as alternative delivery harnesses.

Shared frame: source-stated alternative in extracted literature

Strengths here: presented as a precision gene-editing tool for soybean grain-quality engineering; presented as a next-generation targeted approach; programmable nuclease platform for site-specific DNA cleavage.

Relative tradeoffs: specific implementation limits are not described in the abstract; persistent challenges in targeted delivery; persistent challenges in safe delivery.

Source:

The review also discusses broader CRISPR-based systems and multiple delivery approaches rather than Cas9 alone. Viral vectors, nanocarriers, and extracellular vesicles are presented as alternative delivery harnesses.

The abstract contrasts CRISPR/Cas9 with other advancing modalities including gene therapy, stem cell therapy, and optogenetics.

Shared frame: source-stated alternative in extracted literature

Strengths here: presented as a precision gene-editing tool for soybean grain-quality engineering; presented as a next-generation targeted approach; programmable nuclease platform for site-specific DNA cleavage.

Relative tradeoffs: specific implementation limits are not described in the abstract; persistent challenges in targeted delivery; persistent challenges in safe delivery.

Source:

The abstract contrasts CRISPR/Cas9 with other advancing modalities including gene therapy, stem cell therapy, and optogenetics.

The abstract contrasts CRISPR/Cas9 with other advancing modalities including gene therapy, stem cell therapy, and optogenetics.

Shared frame: source-stated alternative in extracted literature

Strengths here: presented as a precision gene-editing tool for soybean grain-quality engineering; presented as a next-generation targeted approach; programmable nuclease platform for site-specific DNA cleavage.

Relative tradeoffs: specific implementation limits are not described in the abstract; persistent challenges in targeted delivery; persistent challenges in safe delivery.

Source:

The abstract contrasts CRISPR/Cas9 with other advancing modalities including gene therapy, stem cell therapy, and optogenetics.

Compared with polymeric vesicles

The review also discusses broader CRISPR-based systems and multiple delivery approaches rather than Cas9 alone. Viral vectors, nanocarriers, and extracellular vesicles are presented as alternative delivery harnesses.

Shared frame: source-stated alternative in extracted literature

Strengths here: presented as a precision gene-editing tool for soybean grain-quality engineering; presented as a next-generation targeted approach; programmable nuclease platform for site-specific DNA cleavage.

Relative tradeoffs: specific implementation limits are not described in the abstract; persistent challenges in targeted delivery; persistent challenges in safe delivery.

Source:

The review also discusses broader CRISPR-based systems and multiple delivery approaches rather than Cas9 alone. Viral vectors, nanocarriers, and extracellular vesicles are presented as alternative delivery harnesses.

Compared with prime-editing

The abstract mentions RNAi, AlphaFold2-guided gene editing, promoter engineering, Prime Editing, transgenesis, and induced mutagenesis as alternative or complementary approaches.; The abstract explicitly mentions prime editing and Base editing as alternative gene-editing strategies in the same comparison.; The abstract names prime editing and lineage tracing as adjacent genetic approaches used alongside or instead of CRISPR-Cas9 in organoid studies.

Shared frame: source-stated alternative in extracted literature

Strengths here: presented as a precision gene-editing tool for soybean grain-quality engineering; presented as a next-generation targeted approach; programmable nuclease platform for site-specific DNA cleavage.

Relative tradeoffs: specific implementation limits are not described in the abstract; persistent challenges in targeted delivery; persistent challenges in safe delivery.

Source:

The abstract mentions RNAi, AlphaFold2-guided gene editing, promoter engineering, Prime Editing, transgenesis, and induced mutagenesis as alternative or complementary approaches.

Source:

The abstract explicitly mentions prime editing and Base editing as alternative gene-editing strategies in the same comparison.

Source:

The abstract names prime editing and lineage tracing as adjacent genetic approaches used alongside or instead of CRISPR-Cas9 in organoid studies.

The abstract contrasts CRISPR/Cas9 with other programmable nuclease classes including TALENs and ZFNs.; The abstract directly contrasts CRISPR-Cas9 with TALENs and broader synthetic biology approaches. Base editing is also presented as an emerging related genetic engineering technology.; The review also discusses TALENs, ZFNs, and viral vector-mediated delivery systems as alternative or complementary gene-therapy approaches.; The source contrasts CRISPR/Cas9 with zinc finger nucleases, TALENs, lentiviral vectors, and piggyBac transposition. ZFNs and TALENs are described as limited by complex design and off-target effects, while lentiviral and piggyBac methods are associated with exogenous gene expression.

Shared frame: source-stated alternative in extracted literature

Strengths here: presented as a precision gene-editing tool for soybean grain-quality engineering; presented as a next-generation targeted approach; programmable nuclease platform for site-specific DNA cleavage.

Relative tradeoffs: specific implementation limits are not described in the abstract; persistent challenges in targeted delivery; persistent challenges in safe delivery.

Source:

The abstract contrasts CRISPR/Cas9 with other programmable nuclease classes including TALENs and ZFNs.

Source:

The abstract directly contrasts CRISPR-Cas9 with TALENs and broader synthetic biology approaches. Base editing is also presented as an emerging related genetic engineering technology.

Source:

The review also discusses TALENs, ZFNs, and viral vector-mediated delivery systems as alternative or complementary gene-therapy approaches.

Source:

The source contrasts CRISPR/Cas9 with zinc finger nucleases, TALENs, lentiviral vectors, and piggyBac transposition. ZFNs and TALENs are described as limited by complex design and off-target effects, while lentiviral and piggyBac methods are associated with exogenous gene expression.

Compared with zinc finger nucleases

The abstract contrasts CRISPR/Cas9 with other programmable nuclease classes including TALENs and ZFNs.; The review also discusses TALENs, ZFNs, and viral vector-mediated delivery systems as alternative or complementary gene-therapy approaches.; The source contrasts CRISPR/Cas9 with zinc finger nucleases, TALENs, lentiviral vectors, and piggyBac transposition. ZFNs and TALENs are described as limited by complex design and off-target effects, while lentiviral and piggyBac methods are associated with exogenous gene expression.

Shared frame: source-stated alternative in extracted literature

Strengths here: presented as a precision gene-editing tool for soybean grain-quality engineering; presented as a next-generation targeted approach; programmable nuclease platform for site-specific DNA cleavage.

Relative tradeoffs: specific implementation limits are not described in the abstract; persistent challenges in targeted delivery; persistent challenges in safe delivery.

Source:

The abstract contrasts CRISPR/Cas9 with other programmable nuclease classes including TALENs and ZFNs.

Source:

The review also discusses TALENs, ZFNs, and viral vector-mediated delivery systems as alternative or complementary gene-therapy approaches.

Source:

The source contrasts CRISPR/Cas9 with zinc finger nucleases, TALENs, lentiviral vectors, and piggyBac transposition. ZFNs and TALENs are described as limited by complex design and off-target effects, while lentiviral and piggyBac methods are associated with exogenous gene expression.

Ranked Citations

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    Best ReviewSource 1International Journal of Ophthalmology & Eye Science2015Claim 200Claim 201Claim 202

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    Extracted from this source document. Seeded from load plan for claim cl3.

  5. 5.
    StructuralSource 5MED2025Claim 69

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  6. 6.
    Best ReviewSource 6Biomedicines2018Claim 136Claim 137Claim 138

    Seeded from load plan for claim cl1.

  7. 7.
    StructuralSource 7Annual Review of Biochemistry2016Claim 184Claim 185Claim 186

    Seeded from load plan for claim cl3. Extracted from this source document.

  8. 8.
    StructuralSource 8MED2025Claim 42Claim 61

    Extracted from this source document.

  9. 9.

    Extracted from this source document.

  10. 10.
    StructuralSource 10Frontiers in Molecular Neuroscience2023Claim 72Claim 73Claim 74

    Seeded from load plan for claim cl4. Extracted from this source document.

  11. 11.

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  12. 12.

    Extracted from this source document. Seeded from load plan for claim c4.

  13. 13.

    Seeded from load plan for claim clm_2. Extracted from this source document.

  14. 14.
    StructuralSource 14European Journal of Cell Biology2025Claim 48Claim 64

    Seeded from load plan for claim cl2. Extracted from this source document.

  15. 15.

    Extracted from this source document. Seeded from load plan for claim cl2.

  16. 16.
    StructuralSource 16MED2026Claim 13Claim 15

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  17. 17.
    StructuralSource 17MED2026Claim 2Claim 6

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  18. 18.
    Best ReviewSource 18Frontiers in Genome Editing2021Claim 84Claim 115Claim 116

    Seeded from load plan for claim cl1.

  19. 19.
    StructuralSource 19Frontiers in Pharmacology2019Claim 129Claim 130Claim 131

    Seeded from load plan for claim clm_gene_editing_tools_in_scope. Extracted from this source document.

  20. 20.

    Extracted from this source document.

  21. 21.

    Extracted from this source document. Seeded from load plan for claim cl4.

  22. 22.
    StructuralSource 22MED2025Claim 25Claim 68

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  23. 23.

    Extracted from this source document. Seeded from load plan for claim cl1.

  24. 24.

    Seeded from load plan for claim c3. Extracted from this source document.

  25. 25.
    Best ReviewSource 25Annual Review of Biomedical Engineering2017Claim 156Claim 157Claim 158

    Seeded from load plan for claim cl2.

  26. 26.

    Extracted from this source document.

  27. 27.

    Extracted from this source document.

  28. 28.
    Best ReviewSource 28Parasitology2018Claim 135Claim 144Claim 145

    Seeded from load plan for claim cl1.

  29. 29.
    StructuralSource 29Advances in experimental medicine and biology2021Claim 99Claim 100

    Extracted from this source document. Seeded from load plan for claim cl2.

  30. 30.
    StructuralSource 30International Journal of Molecular Sciences2022Claim 76

    Extracted from this source document. Seeded from load plan for claim cl5.

  31. 31.
    StructuralSource 31MED2025Claim 43Claim 70

    Extracted from this source document. Seeded from load plan for claim c5.